Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_25045 Sequoiadendron giganteum HOM05D003065 ORTHO05D003802 5.9e-53 210.7 113 100.0
MBI02_g34314_MAGBIO Magnolia biondii HOM05D003065 ORTHO05D003802 4.0e-33 144.8 114 66.7
CDE05G1053 Ceratophyllum demersum HOM05D003065 ORTHO05D003802 1.8e-30 136.0 114 59.6
Nn1g03660 Nelumbo nucifera HOM05D003065 ORTHO05D003802 3.1e-30 135.2 114 60.5
EL10Ac9g20661 Beta vulgaris HOM05D003065 ORTHO05D003802 4.1e-30 134.8 111 62.2
AUR62037144 Chenopodium quinoa HOM05D003065 ORTHO05D003802 4.1e-30 134.8 113 62.8
TWI36G1576 Tripterygium wilfordii HOM05D003065 ORTHO05D003802 7.0e-30 134.0 114 63.2
Aqoxy4G02067 Aquilegia oxysepala HOM05D003065 ORTHO05D003802 1.2e-29 133.3 114 60.5
QL08p033752 Quercus lobata HOM05D003065 ORTHO05D003802 1.6e-29 132.9 112 61.6
AUR62025067 Chenopodium quinoa HOM05D003065 ORTHO05D003802 2.7e-29 132.1 113 60.2
Ah.01g014620 Amaranthus hybridus HOM05D003065 ORTHO05D003802 3.5e-29 131.7 113 61.9
CsaV3_2G035170 Cucumis sativus L. HOM05D003065 ORTHO05D003802 3.5e-29 131.7 113 57.5
Manes.13G072700 Manihot esculenta HOM05D003065 ORTHO05D003802 3.5e-29 131.7 114 59.6
CiPaw.03G162600 Carya illinoinensis HOM05D003065 ORTHO05D003802 4.5e-29 131.3 114 62.3
Ciclev10015457m.g Citrus clementina HOM05D003065 ORTHO05D003802 4.5e-29 131.3 114 59.6
SalBow1G7597 Salvia bowleyana HOM05D003065 ORTHO05D003802 5.9e-29 131.0 114 59.6
Dinv18529 Davidia involucrata HOM05D003065 ORTHO05D003802 7.8e-29 130.6 114 60.5
Prupe.3G220000 Prunus persica HOM05D003065 ORTHO05D003802 7.8e-29 130.6 114 61.4
Ca_19100_v3 Cicer arietinum L. HOM05D003065 ORTHO05D003802 1.0e-28 130.2 114 59.6
Lalb_Chr03g0028881 Lupinus albus HOM05D003065 ORTHO05D003802 1.0e-28 130.2 114 60.5
Medtr4g046707 Medicago truncatula HOM05D003065 ORTHO05D003802 1.0e-28 130.2 114 59.6
Phvul.011G106000 Phaseolus vulgaris HOM05D003065 ORTHO05D003802 1.0e-28 130.2 114 60.5
PGR142G3240 Punica granatum HOM05D003065 ORTHO05D003802 1.0e-28 130.2 113 60.2
arahy.Tifrunner.gnm1.ann1.Y3QZTF Arachis hypogaea HOM05D003065 ORTHO05D003802 1.3e-28 129.8 114 59.6
CiPaw.04G117500 Carya illinoinensis HOM05D003065 ORTHO05D003802 1.3e-28 129.8 114 61.4
FAN14G1636 Fragaria x ananassa HOM05D003065 ORTHO05D003802 1.3e-28 129.8 114 60.5
Cpa.g.sc8.233 Carica papaya HOM05D003065 ORTHO05D003802 1.7e-28 129.4 114 59.6
Cc05_g05030 Coffea canephora HOM05D003065 ORTHO05D003802 1.7e-28 129.4 114 61.4
FvH4_6g43520 Fragaria vesca HOM05D003065 ORTHO05D003802 1.7e-28 129.4 114 60.5
FAN02G0663 Fragaria x ananassa HOM05D003065 ORTHO05D003802 1.7e-28 129.4 114 60.5
FAN09G1506 Fragaria x ananassa HOM05D003065 ORTHO05D003802 1.7e-28 129.4 114 60.5
HanXRQChr17g0560931 Helianthus annuus HOM05D003065 ORTHO05D003802 1.7e-28 129.4 114 61.4
Cfa014437 Carpinus fangiana HOM05D003065 ORTHO05D003802 2.3e-28 129.0 113 60.2
Haze_12895 Corylus avellana HOM05D003065 ORTHO05D003802 2.3e-28 129.0 113 60.2
Nn1g07002 Nelumbo nucifera HOM05D003065 ORTHO05D003802 2.3e-28 129.0 113 56.6
VMungo1127G1760 Vigna mungo HOM05D003065 ORTHO05D003802 2.3e-28 129.0 114 60.5
BraA09t42082Z Brassica rapa HOM05D003065 ORTHO05D003802 2.9e-28 128.6 113 58.4
Glyma.12G101300 Glycine max HOM05D003065 ORTHO05D003802 2.9e-28 128.6 114 59.6
BolC8t52711H Brassica oleracea HOM05D003065 ORTHO05D003802 3.8e-28 128.3 114 58.8
Sc12g0002370 Simmondsia chinensis HOM05D003065 ORTHO05D003802 3.8e-28 128.3 113 60.2
C08p51790 Brassica napus HOM05D000310 ORTHO05D003802 5.0e-28 127.9 113 58.4
vmacro09325 Vaccinium macrocarpon HOM05D003065 ORTHO05D003802 5.0e-28 127.9 116 58.6
ClCG02G008460 Citrullus lanatus HOM05D003065 ORTHO05D003802 6.6e-28 127.5 113 54.0
MELO3C019237.2 Cucumis melo HOM05D003065 ORTHO05D003802 6.6e-28 127.5 113 55.8
FAN09G0800 Fragaria x ananassa HOM05D003065 ORTHO05D003802 6.6e-28 127.5 114 58.8
Gohir.D13G062500 Gossypium hirsutum HOM05D003065 ORTHO05D003802 6.6e-28 127.5 114 58.8
MD17G1093000 Malus domestica HOM05D003065 ORTHO05D003802 6.6e-28 127.5 113 61.1
Nitab4.5_0005894g0020 Nicotiana tabacum HOM05D003065 ORTHO05D003802 6.6e-28 127.5 114 60.5
Peaxi162Scf00007g01221 Petunia axillaris HOM05D003065 ORTHO05D003802 6.6e-28 127.5 114 62.3
Sed0000552 Sechium edule HOM05D003065 ORTHO05D003802 6.6e-28 127.5 113 55.8
GSVIVG01030621001 Vitis vinifera HOM05D003065 ORTHO05D003802 6.6e-28 127.5 114 60.5
CSS0049428 Camellia sinensis var. sinensis HOM05D003065 ORTHO05D003802 8.6e-28 127.1 115 60.9
COL.COLO4_12981 Corchorus olitorius HOM05D003065 ORTHO05D003802 8.6e-28 127.1 114 58.8
Lalb_Chr01g0005571 Lupinus albus HOM05D003065 ORTHO05D003802 8.6e-28 127.1 114 58.8
Thhalv10017846m.g Eutrema salsugineum HOM05D003065 ORTHO05D003802 1.1e-27 126.7 114 59.6
Glyma.U031313 Glycine max HOM05D003065 ORTHO05D003802 1.1e-27 126.7 112 60.7
RcHm_v2.0_Chr2g0160041 Rosa chinensis HOM05D003065 ORTHO05D003802 1.1e-27 126.7 114 59.6
THA.LOC104827382 Tarenaya hassleriana HOM05D003065 ORTHO05D003802 1.1e-27 126.7 114 57.0
Gorai.013G071000 Gossypium raimondii HOM05D003065 ORTHO05D003802 1.5e-27 126.3 114 57.9
CAN.G80.21 Capsicum annuum HOM05D003065 ORTHO05D003802 1.9e-27 125.9 114 60.5
Thhalv10017883m.g Eutrema salsugineum HOM05D003065 ORTHO05D003802 1.9e-27 125.9 114 59.6
Hma1.2p1_0613F.1_g189150 Hydrangea macrophylla HOM05D003065 ORTHO05D003802 1.9e-27 125.9 112 57.1
BcaC07g42139 Brassica carinata HOM05D003065 ORTHO05D003802 2.5e-27 125.6 117 56.4
Gohir.A13G059500 Gossypium hirsutum HOM05D003065 ORTHO05D003802 2.5e-27 125.6 114 58.8
Os05g0499500 Oryza sativa ssp. japonica HOM05D003065 ORTHO05D003802 3.3e-27 125.2 114 57.0
PSO541G1708 Papaver somniferum HOM05D003065 ORTHO05D003802 3.3e-27 125.2 113 59.3
Potri.017G038500 Populus trichocarpa HOM05D003065 ORTHO05D003802 3.3e-27 125.2 114 60.5
TWI75G1157 Tripterygium wilfordii HOM05D003065 ORTHO05D003802 3.3e-27 125.2 114 59.6
MSTRG.12287 Avicennia marina HOM05D003065 ORTHO05D003802 4.3e-27 124.8 113 57.5
ECA233G0914 Erigeron canadensis HOM05D003065 ORTHO05D003802 4.3e-27 124.8 114 61.4
TPR.G19036 Trifolium pratense HOM05D003065 ORTHO05D003802 4.3e-27 124.8 114 58.8
PSO675G8127 Papaver somniferum HOM05D003065 ORTHO05D003802 5.6e-27 124.4 113 59.3
Sabra07G0098600 Salix brachista HOM05D003065 ORTHO05D003802 5.6e-27 124.4 114 57.9
Thhalv10007929m.g Eutrema salsugineum HOM05D003065 ORTHO05D003802 7.3e-27 124.0 114 57.0
MD09G1105400 Malus domestica HOM05D003065 ORTHO05D003802 7.3e-27 124.0 113 57.5
Potri.007G121900 Populus trichocarpa HOM05D003065 ORTHO05D003802 7.3e-27 124.0 114 58.8
Sabra17G0025600 Salix brachista HOM05D003065 ORTHO05D003802 7.3e-27 124.0 114 61.4
Sp1g04125 Schrenkiella parvula HOM05D003065 ORTHO05D003802 7.3e-27 124.0 112 58.0
SpUn0024_0010 Schrenkiella parvula HOM05D003065 ORTHO05D003802 7.3e-27 124.0 112 58.0
Zm00001eb291870 Zea mays HOM05D003065 ORTHO05D003802 7.3e-27 124.0 114 59.6
Aa31LG1G19430 Aethionema arabicum HOM05D003065 ORTHO05D003802 9.5e-27 123.6 114 57.0
Migut.H01221 Erythranthe guttata HOM05D003065 ORTHO05D003802 9.5e-27 123.6 114 57.0
A05p13140 Brassica napus HOM05D003065 ORTHO05D003802 1.2e-26 123.2 111 60.4
BraA05t20252Z Brassica rapa HOM05D003065 ORTHO05D003802 1.2e-26 123.2 111 60.4
CARHR004740 Cardamine hirsuta HOM05D003065 ORTHO05D003802 1.2e-26 123.2 114 55.3
Nitab4.5_0001176g0140 Nicotiana tabacum HOM05D003065 ORTHO05D003802 1.2e-26 123.2 114 59.6
THA.LOC104800983 Tarenaya hassleriana HOM05D003065 ORTHO05D003802 1.2e-26 123.2 111 58.6
Atru.chr6.3154 Acer truncatum HOM05D003065 ORTHO05D003802 1.6e-26 122.9 114 58.8
BcaC02g11329 Brassica carinata HOM05D003065 ORTHO05D003802 1.6e-26 122.9 109 60.6
C04p17290 Brassica napus HOM05D003065 ORTHO05D003802 1.6e-26 122.9 109 60.6
BolC4t23281H Brassica oleracea HOM05D003065 ORTHO05D003802 1.6e-26 122.9 109 60.6
PGSC0003DMG400024333 Solanum tuberosum HOM05D003065 ORTHO05D003802 1.6e-26 122.9 114 57.0
Thecc.02G162000 Theobroma cacao HOM05D003065 ORTHO05D003802 1.6e-26 122.9 114 57.0
DCAR_012955 Daucus carota HOM05D003065 ORTHO05D003802 3.6e-26 121.7 114 54.4
Solyc12g005780.3 Solanum lycopersicum HOM05D003065 ORTHO05D003802 3.6e-26 121.7 114 57.0
Sopen12g001710 Solanum pennellii HOM05D003065 ORTHO05D003802 3.6e-26 121.7 114 57.0
CARHR126160 Cardamine hirsuta HOM05D003065 ORTHO05D003802 4.7e-26 121.3 112 58.9
BcaC07g36852 Brassica carinata HOM05D003065 ORTHO05D003802 6.1e-26 120.9 114 56.1
A08p36480 Brassica napus HOM05D003065 ORTHO05D003802 6.1e-26 120.9 114 56.1
C08p01860 Brassica napus HOM05D003065 ORTHO05D003802 6.1e-26 120.9 114 56.1
BolC8t46984H Brassica oleracea HOM05D003065 ORTHO05D003802 6.1e-26 120.9 114 56.1
BraA08t35551Z Brassica rapa HOM05D003065 ORTHO05D003802 6.1e-26 120.9 114 56.1
Carub.0001s0456 Capsella rubella HOM05D003065 ORTHO05D003802 6.1e-26 120.9 114 53.5
Lsat_1_v5_gn_8_129420 Lactuca sativa HOM05D003065 ORTHO05D003802 6.1e-26 120.9 105 61.9
AL1G15050 Arabidopsis lyrata HOM05D003065 ORTHO05D003802 8.0e-26 120.6 114 52.6
BcaB02g10475 Brassica carinata HOM05D003065 ORTHO05D003802 8.0e-26 120.6 106 61.3
Nitab4.5_0000631g0050 Nicotiana tabacum HOM05D003065 ORTHO05D003802 1.0e-25 120.2 114 57.0
Sp4g14710 Schrenkiella parvula HOM05D003065 ORTHO05D003802 1.0e-25 120.2 109 59.6
AT1G05270 Arabidopsis thaliana HOM05D003065 ORTHO05D003802 1.4e-25 119.8 114 52.6
MSTRG.14153 Avicennia marina HOM05D003065 ORTHO05D003802 1.4e-25 119.8 114 57.9
Duzib248G1274 Durio zibethinus HOM05D003065 ORTHO05D003802 1.8e-25 119.4 116 56.0
Lj3g0014705 Lotus japonicus HOM05D003065 ORTHO05D003802 3.0e-25 118.6 114 55.3
unitig_21.g20057 Utricularia gibba HOM05D003065 ORTHO05D003802 3.0e-25 118.6 114 55.3
CANSAT64G1715 Cannabis sativa HOM05D003065 ORTHO05D003802 4.0e-25 118.2 114 57.9
AL4G27732 Arabidopsis lyrata HOM05D003065 ORTHO05D003802 5.2e-25 117.9 109 58.7
BcaB01g03983 Brassica carinata HOM05D003065 ORTHO05D003802 1.2e-24 116.7 111 56.8
BcaC01g05909 Brassica carinata HOM05D003065 ORTHO05D003802 1.2e-24 116.7 111 56.8
C03p21170 Brassica napus HOM05D003065 ORTHO05D003802 1.2e-24 116.7 111 56.8
AL125U10034 Arabidopsis lyrata HOM05D003065 ORTHO05D003802 1.5e-24 116.3 109 56.9
BcaB01g03984 Brassica carinata HOM05D003065 ORTHO05D003802 1.5e-24 116.3 109 57.8
A09p67510 Brassica napus HOM05D000226 ORTHO05D000142 2.0e-24 115.9 88 63.6
Solyc07g052560.3 Solanum lycopersicum HOM05D003065 ORTHO05D003802 2.0e-24 115.9 114 59.6
Psat7g195560 Pisum sativum HOM05D003065 ORTHO05D003802 2.6e-24 115.5 100 60.0
A03p18140 Brassica napus HOM05D003065 ORTHO05D003802 3.4e-24 115.2 111 55.0
BraA03t11073Z Brassica rapa HOM05D003065 ORTHO05D003802 3.4e-24 115.2 111 55.0
Thhalv10002878m.g Eutrema salsugineum HOM05D003065 ORTHO05D003802 4.4e-24 114.8 111 56.8
AT2G32340 Arabidopsis thaliana HOM05D003065 ORTHO05D003802 1.1e-22 110.2 109 56.9
SGA_v2.0_scaffold49G18335 Striga asiatica HOM05D003065 ORTHO05D003802 1.1e-22 110.2 84 63.1
Carub.0004s1369 Capsella rubella HOM05D003065 ORTHO05D003802 4.1e-22 108.2 110 53.6
Lj8A123T53 Lonicera japonica HOM05D003065 ORTHO05D003802 4.1e-22 108.2 73 72.6
Nitab4.5_0006207g0040 Nicotiana tabacum HOM05D003065 ORTHO05D003802 9.2e-22 107.1 108 53.7
Pp3c16_8270 Physcomitrium patens HOM05D003065 ORTHO05D003802 2.3e-20 102.4 100 51.0
PGSC0003DMG400026175 Solanum tuberosum HOM05D003065 ORTHO05D003802 5.0e-20 101.3 126 49.2
C09p44370 Brassica napus HOM05D003065 ORTHO05D003802 4.3e-19 98.2 71 66.2
MD17G1092800 Malus domestica HOM05D003065 ORTHO05D003802 4.3e-19 98.2 111 50.5
BolC3t14500H Brassica oleracea HOM05D003065 ORTHO05D003802 2.1e-18 95.9 65 70.8
Potri.007G121800 Populus trichocarpa HOM05D003065 ORTHO05D003802 2.1e-18 95.9 102 49.0
CAN.G921.9 Capsicum annuum HOM05D003065 ORTHO05D003802 3.6e-18 95.1 116 46.6
PGR142G1323 Punica granatum HOM05D003065 ORTHO05D003802 1.8e-17 92.8 79 55.7
BcaC05g24399 Brassica carinata HOM05D003065 ORTHO05D003802 2.3e-17 92.4 112 50.0
BcaC05g24396 Brassica carinata HOM05D003065 ORTHO05D003802 6.8e-17 90.9 108 50.9
VMungo1127G1794 Vigna mungo HOM05D003065 ORTHO05D003802 8.9e-17 90.5 93 50.5
Aa31LG8G5790 Aethionema arabicum HOM05D003065 ORTHO05D003802 1.2e-16 90.1 82 51.2
CBR_g51235 Chara braunii HOM05D003065 ORTHO05D003802 2.0e-16 89.4 105 43.8
Ca_19102_v3 Cicer arietinum L. HOM05D003065 ORTHO05D003802 3.4e-16 88.6 105 46.7
Medtr4g046663 Medicago truncatula HOM05D003065 ORTHO05D003802 3.4e-16 88.6 93 51.6
Lj3g0000029 Lotus japonicus HOM05D003065 ORTHO05D003802 9.8e-16 87.0 118 44.9
Aa31LG8G5800 Aethionema arabicum HOM05D003065 ORTHO05D003802 1.3e-15 86.7 82 48.8
SalBow1G4454 Salvia bowleyana HOM05D003065 ORTHO05D003802 1.3e-15 86.7 97 48.5
BolC8t52712H Brassica oleracea HOM05D003065 ORTHO05D003802 1.7e-15 86.3 85 51.8
arahy.Tifrunner.gnm1.ann1.KAFC7Q Arachis hypogaea HOM05D003065 ORTHO05D003802 3.7e-15 85.1 79 57.0
Peaxi162Scf00012g00336 Petunia axillaris HOM05D003065 ORTHO05D003802 2.4e-14 82.4 111 49.5
Lj3g0025078 Lotus japonicus HOM05D003065 ORTHO05D003802 4.1e-14 81.6 57 70.2
Ca_28271_v3 Cicer arietinum L. HOM05D003065 ORTHO05D003802 5.4e-14 81.3 103 43.7
Sabra07G0098500 Salix brachista HOM05D003065 ORTHO05D003802 5.4e-14 81.3 138 38.4
HPP92_017620 Vanilla planifolia HOM05D003065 ORTHO05D003802 9.2e-14 80.5 56 66.1
BolC5t29129H Brassica oleracea HOM05D003065 ORTHO05D003802 1.2e-13 80.1 126 43.7
Medtr6g055230 Medicago truncatula HOM05D003065 ORTHO05D003802 2.7e-13 79.0 83 49.4
BraA10t42653Z Brassica rapa HOM05D003065 ORTHO05D003802 7.8e-13 77.4 91 47.3
SalBow1G8297 Salvia bowleyana HOM05D003065 ORTHO05D003802 7.8e-13 77.4 94 42.6
SMO329G0091 Selaginella moellendorffii HOM05D003065 ORTHO05D003802 3.0e-12 75.5 84 48.8
arahy.Tifrunner.gnm1.ann1.9WLS7Z Arachis hypogaea HOM05D003065 ORTHO05D003802 1.5e-11 73.2 81 48.1
arahy.Tifrunner.gnm1.ann1.AR4R13 Arachis hypogaea HOM05D003065 ORTHO05D003802 1.5e-11 73.2 81 48.1
TPR.G39901 Trifolium pratense HOM05D003065 ORTHO05D003802 1.5e-11 73.2 75 48.0
SalBow1G5165 Salvia bowleyana HOM05D003065 ORTHO05D003802 2.5e-11 72.4 88 46.6
SalBow1G5817 Salvia bowleyana HOM05D003065 ORTHO05D003802 2.5e-11 72.4 88 43.2
AagrBONN_evm.TU.Sc2ySwM_228.4125 Anthoceros agrestis HOM05D003065 ORTHO05D003802 1.2e-10 70.1 111 37.8
SalBow3G2088 Salvia bowleyana HOM05D003065 ORTHO05D003802 1.6e-10 69.7 88 46.6
SalBow3G4408 Salvia bowleyana HOM05D003065 ORTHO05D003802 1.6e-10 69.7 88 46.6
SMO329G0098 Selaginella moellendorffii HOM05D003065 ORTHO05D003802 1.6e-10 69.7 92 51.1
SalBow1G0983 Salvia bowleyana HOM05D003065 ORTHO05D003802 4.7e-10 68.2 88 45.5
SMO238G0005 Selaginella moellendorffii HOM05D003065 ORTHO05D003802 3.1e-09 65.5 69 46.4
TWI36G0602 Tripterygium wilfordii HOM05D003065 ORTHO05D003802 9.9e-08 60.5 94 38.3
SalBow1G5448 Salvia bowleyana HOM05D003065 ORTHO05D003802 3.7e-07 58.5 62 48.4


User provided reference genes

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