Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_24977 Sequoiadendron giganteum HOM05D005488 ORTHO05D006568 1.4e-73 279.6 148 100.0
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 6.6e-36 154.5 132 62.9
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 1.1e-35 153.7 140 60.0
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 5.6e-35 151.4 138 56.5
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 5.6e-35 151.4 128 62.5
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 6.1e-34 147.9 128 60.9
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 8.0e-34 147.5 139 57.6
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 2.3e-33 146.0 105 69.5
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 2.3e-33 146.0 141 58.2
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 3.0e-33 145.6 131 59.5
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 4.0e-33 145.2 142 56.3
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 5.2e-33 144.8 141 57.4
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 6.8e-33 144.4 134 60.4
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 6.8e-33 144.4 128 60.2
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 6.8e-33 144.4 102 70.6
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 1.5e-32 143.3 131 58.8
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 1.5e-32 143.3 125 60.0
Os10g0566700 Oryza sativa ssp. japonica HOM05D005488 ORTHO05D006568 1.5e-32 143.3 103 69.9
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 2.6e-32 142.5 107 68.2
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 3.4e-32 142.1 136 58.8
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 3.4e-32 142.1 102 70.6
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 3.4e-32 142.1 148 56.8
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 4.4e-32 141.7 148 54.1
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 4.4e-32 141.7 102 71.6
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 4.4e-32 141.7 132 58.3
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 5.8e-32 141.4 135 56.3
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 5.8e-32 141.4 91 76.9
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 5.8e-32 141.4 129 58.1
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 5.8e-32 141.4 140 57.9
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 5.8e-32 141.4 141 55.3
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 5.8e-32 141.4 151 55.6
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 5.8e-32 141.4 132 59.1
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 7.5e-32 141.0 102 70.6
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 9.8e-32 140.6 119 61.3
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 9.8e-32 140.6 102 69.6
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 9.8e-32 140.6 105 67.6
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 9.8e-32 140.6 133 56.4
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 9.8e-32 140.6 133 56.4
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 9.8e-32 140.6 131 57.3
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 9.8e-32 140.6 132 59.1
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 1.3e-31 140.2 136 58.1
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 1.3e-31 140.2 150 56.0
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 1.3e-31 140.2 139 56.1
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 1.3e-31 140.2 104 64.4
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 1.3e-31 140.2 148 54.1
Potri.002G135700 Populus trichocarpa HOM05D005488 ORTHO05D006568 1.3e-31 140.2 130 56.9
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 1.7e-31 139.8 104 66.3
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 2.2e-31 139.4 102 69.6
Zm00001eb390720 Zea mays HOM05D005488 ORTHO05D006568 2.2e-31 139.4 140 55.7
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.9e-31 139.0 114 62.3
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 2.9e-31 139.0 102 69.6
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 3.7e-31 138.7 136 57.4
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 3.7e-31 138.7 133 55.6
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 3.7e-31 138.7 133 54.1
Zm00001eb024030 Zea mays HOM05D005488 ORTHO05D006568 3.7e-31 138.7 107 67.3
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 4.9e-31 138.3 125 59.2
Dinv44023 Davidia involucrata HOM05D005488 ORTHO05D006568 6.4e-31 137.9 92 73.9
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 6.4e-31 137.9 102 68.6
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 8.3e-31 137.5 113 61.9
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 8.3e-31 137.5 141 53.9
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 8.3e-31 137.5 128 59.4
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.1e-30 137.1 133 55.6
SMO244G0054 Selaginella moellendorffii HOM05D005488 ORTHO05D006568 1.1e-30 137.1 91 74.7
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 1.4e-30 136.7 122 58.2
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 1.9e-30 136.3 116 60.3
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 1.9e-30 136.3 102 69.6
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 1.9e-30 136.3 142 54.2
AagrBONN_evm.TU.Sc2ySwM_117.3656 Anthoceros agrestis HOM05D005488 ORTHO05D006568 2.4e-30 136.0 148 52.0
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 2.4e-30 136.0 109 67.0
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.4e-30 136.0 133 55.6
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 2.4e-30 136.0 144 52.1
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 3.2e-30 135.6 133 59.4
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 3.2e-30 135.6 132 56.1
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 3.2e-30 135.6 114 60.5
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 4.1e-30 135.2 122 57.4
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 4.1e-30 135.2 140 53.6
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 5.4e-30 134.8 112 60.7
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 5.4e-30 134.8 128 57.0
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 5.4e-30 134.8 102 66.7
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 5.4e-30 134.8 144 52.1
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 7.0e-30 134.4 104 63.5
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 7.0e-30 134.4 142 51.4
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 7.0e-30 134.4 141 53.9
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 9.2e-30 134.0 139 53.2
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 1.2e-29 133.7 124 55.6
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 1.6e-29 133.3 133 57.9
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 1.6e-29 133.3 102 65.7
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 2.0e-29 132.9 138 50.7
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 2.7e-29 132.5 118 61.9
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 2.7e-29 132.5 134 56.0
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 3.5e-29 132.1 122 59.8
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 6.0e-29 131.3 145 52.4
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 6.0e-29 131.3 121 59.5
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 6.0e-29 131.3 122 55.7
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 7.8e-29 131.0 133 57.9
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 7.8e-29 131.0 103 66.0
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 7.8e-29 131.0 148 50.7
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 7.8e-29 131.0 104 61.5
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 1.3e-28 130.2 119 58.8
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 1.7e-28 129.8 128 54.7
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 2.3e-28 129.4 119 58.8
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 2.3e-28 129.4 104 60.6
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 3.0e-28 129.0 102 65.7
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 3.0e-28 129.0 141 50.4
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 3.0e-28 129.0 92 71.7
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 3.0e-28 129.0 148 49.3
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 3.9e-28 128.6 119 58.0
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 3.9e-28 128.6 119 58.0
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 3.9e-28 128.6 119 58.0
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 3.9e-28 128.6 119 58.0
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 5.0e-28 128.3 151 51.0
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 5.0e-28 128.3 119 58.0
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 1.1e-27 127.1 121 57.9
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 1.1e-27 127.1 145 52.4
Mapoly0181s0002 Marchantia polymorpha HOM05D005488 ORTHO05D006568 1.1e-27 127.1 147 51.7
Pp3c2_19170 Physcomitrium patens HOM05D005488 ORTHO05D006568 1.1e-27 127.1 104 58.7
HPP92_025708 Vanilla planifolia HOM05D005488 ORTHO05D006568 1.5e-27 126.7 91 70.3
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 2.8e-26 122.5 123 54.5
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 4.7e-26 121.7 94 63.8
Pp3c1_20880 Physcomitrium patens HOM05D005488 ORTHO05D006568 8.0e-26 120.9 99 59.6
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 3.1e-25 119.0 92 66.3
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 3.1e-25 119.0 104 56.7
Sabra14G0032200 Salix brachista HOM05D005488 ORTHO05D006568 4.4e-24 115.2 146 47.3
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 2.9e-23 112.5 134 46.3
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 3.7e-23 112.1 121 52.9
QL04p026246 Quercus lobata HOM05D005488 ORTHO05D006568 4.9e-23 111.7 72 75.0
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 4.9e-23 111.7 128 53.9
Zm00001eb071630 Zea mays HOM05D005488 ORTHO05D006568 2.7e-21 105.9 75 72.0
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 3.5e-21 105.5 108 56.5
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 7.8e-21 104.4 110 52.7
Gohir.D07G176200 Gossypium hirsutum HOM05D005488 ORTHO05D006568 2.3e-17 92.8 76 63.2
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 8.3e-15 84.3 107 47.7
Dinv43589 Davidia involucrata HOM05D005488 ORTHO05D006568 2.4e-14 82.8 82 54.9
Gorai.007G266500 Gossypium raimondii HOM05D005488 ORTHO05D006568 1.1e-11 73.9 67 56.7
MD13G1240800 Malus domestica HOM05D005488 ORTHO05D006568 7.3e-11 71.2 84 50.0
Glyma.07G120400 Glycine max HOM05D005488 ORTHO05D006568 1.2e-10 70.5 53 66.0
Rhsim03G0098500 Rhododendron simsii HOM05D005488 ORTHO05D006568 1.6e-10 70.1 53 69.8
FvH4_1g09160 Fragaria vesca HOM05D002686 ORTHO05D003222 2.2e-07 59.7 130 31.5
FAN23G0852 Fragaria x ananassa HOM05D002686 ORTHO05D003222 2.2e-07 59.7 130 31.5
FAN28G0604 Fragaria x ananassa HOM05D002686 ORTHO05D003222 2.2e-07 59.7 130 31.5
FAN28G1135 Fragaria x ananassa HOM05D002686 ORTHO05D003222 2.2e-07 59.7 130 31.5
FAN26G1050 Fragaria x ananassa HOM05D002686 ORTHO05D003222 2.9e-07 59.3 130 31.5
FAN26G3337 Fragaria x ananassa HOM05D002686 ORTHO05D003222 2.9e-07 59.3 130 31.5
Os02g0781400 Oryza sativa ssp. japonica HOM05D002686 ORTHO05D003222 3.8e-07 58.9 116 31.9
FAN19G1751 Fragaria x ananassa HOM05D002686 ORTHO05D003222 4.9e-07 58.5 130 31.5
Phvul.006G055900 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 8.4e-07 57.8 53 56.6
EL10Ac8g19011 Beta vulgaris HOM05D002686 ORTHO05D003222 1.1e-06 57.4 158 32.9
CAN.G1661.28 Capsicum annuum HOM05D002686 ORTHO05D003222 1.1e-06 57.4 134 29.9
SEGI_38857 Sequoiadendron giganteum HOM05D002686 ORTHO05D003222 2.4e-06 56.2 131 30.5
arahy.Tifrunner.gnm1.ann1.5TSI9H Arachis hypogaea HOM05D002686 ORTHO05D003222 3.2e-06 55.8 118 32.2
arahy.Tifrunner.gnm1.ann1.XRWK6U Arachis hypogaea HOM05D002686 ORTHO05D003222 3.2e-06 55.8 118 32.2
MD15G1221300 Malus domestica HOM05D002686 ORTHO05D003222 7.1e-06 54.7 123 29.3
Psat1g135800 Pisum sativum HOM05D002686 ORTHO05D003222 7.1e-06 54.7 126 31.0
TWI63G0210 Tripterygium wilfordii HOM05D002686 ORTHO05D003222 9.2e-06 54.3 158 31.0
GSVIVG01008295001 Vitis vinifera HOM05D002686 ORTHO05D003222 9.2e-06 54.3 154 28.6


User provided reference genes

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