Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_24927 Sequoiadendron giganteum HOM05D000215 ORTHO05D014536 2.6e-141 505.4 258 100.0
Zm00001eb397640 Zea mays HOM05D013952 ORTHO05D014536 1.3e-15 87.8 98 49.0
BcaC07g39773 Brassica carinata HOM05D000215 ORTHO05D001676 8.5e-15 85.1 117 38.5
vmacro14522 Vaccinium macrocarpon HOM05D011229 ORTHO05D013540 9.4e-14 81.6 102 44.1
SEGI_01724 Sequoiadendron giganteum HOM05D000215 ORTHO05D002282 2.1e-13 80.5 149 38.3
Dinv05527 Davidia involucrata HOM05D000215 ORTHO05D004644 3.6e-13 79.7 166 33.1
Actinidia26851 Actinidia chinensis HOM05D003543 ORTHO05D017182 8.3e-10 68.6 97 39.2
Duzib268G0442 Durio zibethinus HOM05D000215 ORTHO05D003454 1.4e-09 67.8 113 31.9
SGA_v2.0_scaffold114G31933 Striga asiatica HOM05D000215 ORTHO05D002282 2.4e-09 67.0 123 34.1
BcaB06g28256 Brassica carinata HOM05D000215 ORTHO05D001676 3.1e-09 66.6 92 38.0
Pp3c24_15640 Physcomitrium patens HOM05D000215 ORTHO05D008904 3.1e-09 66.6 96 37.5
FAN05G3131 Fragaria x ananassa HOM05D000215 ORTHO05D002282 4.1e-09 66.2 106 34.9
Pp3c13_16440 Physcomitrium patens HOM05D000215 ORTHO05D002239 4.1e-09 66.2 117 35.0
MD06G1177100 Malus domestica HOM05D000215 ORTHO05D003454 5.4e-09 65.9 113 32.7
SEGI_35722 Sequoiadendron giganteum HOM05D000005 ORTHO05D000239 5.4e-09 65.9 80 48.8
Actinidia36676 Actinidia chinensis HOM05D000215 ORTHO05D005049 7.0e-09 65.5 66 50.0
FvH4_6g01250 Fragaria vesca HOM05D000215 ORTHO05D002282 7.0e-09 65.5 106 34.0
FAN09G3198 Fragaria x ananassa HOM05D000215 ORTHO05D002282 7.0e-09 65.5 106 34.0
COL.COLO4_36974 Corchorus olitorius HOM05D000215 ORTHO05D003454 1.2e-08 64.7 116 29.3
Thhalv10015380m.g Eutrema salsugineum HOM05D000215 ORTHO05D002282 1.2e-08 64.7 101 33.7
CANSAT01G0385 Cannabis sativa HOM05D000215 ORTHO05D003454 1.6e-08 64.3 113 31.0
FAN05G5207 Fragaria x ananassa HOM05D000215 ORTHO05D002282 1.6e-08 64.3 106 33.0
Oeu025055.1 Olea europaea HOM05D000215 ORTHO05D002282 1.6e-08 64.3 106 34.0
THA.LOC104821146 Tarenaya hassleriana HOM05D000215 ORTHO05D002282 1.6e-08 64.3 106 32.1
CDE05G3606 Ceratophyllum demersum HOM05D000766 ORTHO05D000587 2.0e-08 63.9 136 30.9
Thecc.02G244100 Theobroma cacao HOM05D000215 ORTHO05D003454 2.0e-08 63.9 108 33.3
GSVIVG01006098001 Vitis vinifera HOM05D003543 ORTHO05D004112 2.0e-08 63.9 65 49.2
ECA247G3639 Erigeron canadensis HOM05D000215 ORTHO05D002282 2.7e-08 63.5 106 32.1
Prupe.5G175800 Prunus persica HOM05D000215 ORTHO05D003454 2.7e-08 63.5 115 32.2
RcHm_v2.0_Chr3g0448811 Rosa chinensis HOM05D000215 ORTHO05D002282 2.7e-08 63.5 131 29.8
vmacro10024 Vaccinium macrocarpon HOM05D000215 ORTHO05D008904 2.7e-08 63.5 104 35.6
Prupe.6G355500 Prunus persica HOM05D000215 ORTHO05D002282 3.5e-08 63.2 102 32.4
Sabra19G0039300 Salix brachista HOM05D000215 ORTHO05D002282 3.5e-08 63.2 130 29.2
Lsat_1_v5_gn_9_17860 Lactuca sativa HOM05D000215 ORTHO05D002282 4.5e-08 62.8 106 33.0
vmacro14708 Vaccinium macrocarpon HOM05D000215 ORTHO05D002282 4.5e-08 62.8 106 34.0
MELO3C008310.2 Cucumis melo HOM05D000215 ORTHO05D008904 5.9e-08 62.4 113 35.4
HanXRQChr07g0193091 Helianthus annuus HOM05D000215 ORTHO05D002282 5.9e-08 62.4 106 34.0
MSTRG.20988 Avicennia marina HOM05D000215 ORTHO05D002282 7.7e-08 62.0 105 33.3
Cfa009134 Carpinus fangiana HOM05D000215 ORTHO05D003454 7.7e-08 62.0 113 31.9
Cc11_g14570 Coffea canephora HOM05D000215 ORTHO05D003454 7.7e-08 62.0 113 31.9
Eucgr.B00358 Eucalyptus grandis HOM05D000215 ORTHO05D003454 7.7e-08 62.0 112 34.8
MBI02_g37288_MAGBIO Magnolia biondii HOM05D000215 ORTHO05D007108 7.7e-08 62.0 101 38.6
ClCG11G006020 Citrullus lanatus HOM05D000215 ORTHO05D008904 1.0e-07 61.6 113 35.4
Haze_12167 Corylus avellana HOM05D000215 ORTHO05D003454 1.0e-07 61.6 113 31.9
CsaV3_6G001940 Cucumis sativus L. HOM05D000215 ORTHO05D008904 1.0e-07 61.6 113 35.4
FAN02G1793 Fragaria x ananassa HOM05D000215 ORTHO05D002282 1.0e-07 61.6 77 37.7
Ah.06g188970 Amaranthus hybridus HOM05D000215 ORTHO05D002282 1.3e-07 61.2 104 30.8
CARHR194740 Cardamine hirsuta HOM05D000215 ORTHO05D002282 1.3e-07 61.2 114 27.2
Dinv15311 Davidia involucrata HOM05D000215 ORTHO05D003454 1.3e-07 61.2 115 37.4
FvH4_3g03220 Fragaria vesca HOM05D000215 ORTHO05D007108 1.3e-07 61.2 100 37.0
HanXRQChr05g0134931 Helianthus annuus HOM05D000215 ORTHO05D002282 1.3e-07 61.2 81 39.5
HanXRQChr08g0231761 Helianthus annuus HOM05D000215 ORTHO05D002282 1.3e-07 61.2 105 32.4
Hma1.2p1_0867F.1_g230280 Hydrangea macrophylla HOM05D000215 ORTHO05D003454 1.3e-07 61.2 113 31.0
MD04G1235600 Malus domestica HOM05D000215 ORTHO05D002282 1.3e-07 61.2 77 40.3
Medtr7g053260 Medicago truncatula HOM05D000215 ORTHO05D002282 1.3e-07 61.2 106 32.1
Rhsim09G0179200 Rhododendron simsii HOM05D000215 ORTHO05D008904 1.3e-07 61.2 108 34.3
Sabra19G0036200 Salix brachista HOM05D000215 ORTHO05D002282 1.3e-07 61.2 130 28.5
TPR.G26839 Trifolium pratense HOM05D000215 ORTHO05D002282 1.3e-07 61.2 106 32.1
Zm00001eb085470 Zea mays HOM05D002753 ORTHO05D015449 1.3e-07 61.2 144 34.0
Cfa000298 Carpinus fangiana HOM05D000215 ORTHO05D007108 1.7e-07 60.8 119 33.6
Ciclev10031496m.g Citrus clementina HOM05D000215 ORTHO05D002282 1.7e-07 60.8 111 32.4
Haze_06635 Corylus avellana HOM05D000215 ORTHO05D007108 1.7e-07 60.8 119 33.6
Haze_06646 Corylus avellana HOM05D000215 ORTHO05D007108 1.7e-07 60.8 119 33.6
HanXRQChr04g0095181 Helianthus annuus HOM05D000215 ORTHO05D002282 1.7e-07 60.8 106 32.1
Psat3g150640 Pisum sativum HOM05D000215 ORTHO05D002282 1.7e-07 60.8 106 32.1
PGR119G1373 Punica granatum HOM05D000215 ORTHO05D003454 1.7e-07 60.8 121 29.8
Sp6g25970 Schrenkiella parvula HOM05D000215 ORTHO05D002282 1.7e-07 60.8 77 32.5
FAN22G2389 Fragaria x ananassa HOM05D000215 ORTHO05D003454 2.2e-07 60.5 109 31.2
Nn1g03782 Nelumbo nucifera HOM05D000215 ORTHO05D007108 2.2e-07 60.5 103 34.0
Thecc.05G261100 Theobroma cacao HOM05D000215 ORTHO05D002282 2.2e-07 60.5 115 27.8
AL6G29550 Arabidopsis lyrata HOM05D000215 ORTHO05D002282 2.9e-07 60.1 111 28.8
FAN21G2598 Fragaria x ananassa HOM05D000215 ORTHO05D007108 2.9e-07 60.1 106 34.9
SGA_v2.0_scaffold7G04031 Striga asiatica HOM05D000215 ORTHO05D002282 2.9e-07 60.1 106 33.0
unitig_26.g9434 Utricularia gibba HOM05D000215 ORTHO05D002282 2.9e-07 60.1 121 32.2
HPP92_019889 Vanilla planifolia HOM05D000215 ORTHO05D003454 2.9e-07 60.1 117 34.2
FAN08G0733 Fragaria x ananassa HOM05D000215 ORTHO05D003454 3.8e-07 59.7 115 29.6
Phvul.008G134400 Phaseolus vulgaris HOM05D000215 ORTHO05D002282 3.8e-07 59.7 105 31.4
PGR119G1537 Punica granatum HOM05D000577 ORTHO05D003389 3.8e-07 59.7 105 32.4
Ciclev10030876m.g Citrus clementina HOM05D000215 ORTHO05D003454 5.0e-07 59.3 113 28.3
MD16G1091300 Malus domestica HOM05D000215 ORTHO05D003454 5.0e-07 59.3 121 28.1
Potri.019G029500 Populus trichocarpa HOM05D000215 ORTHO05D002282 5.0e-07 59.3 130 28.5
SEGI_05436 Sequoiadendron giganteum HOM05D034394 ORTHO05D050960 5.0e-07 59.3 74 43.2
Ah.03g132620 Amaranthus hybridus HOM05D000215 ORTHO05D003454 6.5e-07 58.9 118 25.4
CSS0009571 Camellia sinensis var. sinensis HOM05D000215 ORTHO05D002282 6.5e-07 58.9 104 32.7
Cfa006302 Carpinus fangiana HOM05D000215 ORTHO05D002282 6.5e-07 58.9 106 30.2
CiPaw.08G115500 Carya illinoinensis HOM05D000215 ORTHO05D002282 6.5e-07 58.9 106 31.1
Lsat_1_v5_gn_2_123761 Lactuca sativa HOM05D000215 ORTHO05D008904 6.5e-07 58.9 113 32.7
GSVIVG01026372001 Vitis vinifera HOM05D000215 ORTHO05D002282 6.5e-07 58.9 105 30.5
Dinv04102 Davidia involucrata HOM05D000215 ORTHO05D002282 8.5e-07 58.5 102 30.4
Nitab4.5_0006979g0020 Nicotiana tabacum HOM05D000215 ORTHO05D002282 8.5e-07 58.5 107 32.7
FAN17G0144 Fragaria x ananassa HOM05D000215 ORTHO05D003454 1.1e-06 58.2 107 31.8
Lj4g0021268 Lotus japonicus HOM05D000215 ORTHO05D003454 1.1e-06 58.2 113 29.2
SEGI_07743 Sequoiadendron giganteum HOM05D000071 ORTHO05D014536 1.1e-06 58.2 50 62.0
AagrBONN_evm.TU.Sc2ySwM_228.2258 Anthoceros agrestis HOM05D000215 ORTHO05D007946 1.5e-06 57.8 116 30.2
CiPaw.10G113900 Carya illinoinensis HOM05D000215 ORTHO05D007108 1.5e-06 57.8 159 29.6
Migut.H01405 Erythranthe guttata HOM05D000215 ORTHO05D002239 1.5e-06 57.8 118 33.9
Glyma.02G264200 Glycine max HOM05D000215 ORTHO05D008904 1.5e-06 57.8 90 41.1
MD14G1183300 Malus domestica HOM05D000215 ORTHO05D003454 1.5e-06 57.8 113 31.9
SEGI_21198 Sequoiadendron giganteum HOM05D000071 ORTHO05D012301 1.5e-06 57.8 67 55.2
Peaxi162Scf00017g00272 Petunia axillaris HOM05D000215 ORTHO05D003454 1.9e-06 57.4 113 31.0
TAR629G3507 Trochodendron aralioides HOM05D000215 ORTHO05D003454 1.9e-06 57.4 113 28.3
EL10Ac8g19655 Beta vulgaris HOM05D000215 ORTHO05D002282 2.5e-06 57.0 80 33.8
COL.COLO4_20543 Corchorus olitorius HOM05D000215 ORTHO05D002282 2.5e-06 57.0 159 27.7
Dinv17864 Davidia involucrata HOM05D000215 ORTHO05D007108 2.5e-06 57.0 114 33.3
Glyma.17G090900 Glycine max HOM05D000215 ORTHO05D003454 2.5e-06 57.0 113 29.2
Phvul.003G199200 Phaseolus vulgaris HOM05D000215 ORTHO05D003454 2.5e-06 57.0 113 28.3
QL10p012119 Quercus lobata HOM05D000215 ORTHO05D003454 2.5e-06 57.0 113 29.2
Rhsim13G0164000 Rhododendron simsii HOM05D000215 ORTHO05D007108 2.5e-06 57.0 101 36.6
Sc12g0005410 Simmondsia chinensis HOM05D000215 ORTHO05D003454 2.5e-06 57.0 113 27.4
MSTRG.18818 Avicennia marina HOM05D000215 ORTHO05D002282 3.2e-06 56.6 106 29.2
EL10Ac8g19699 Beta vulgaris HOM05D000215 ORTHO05D002282 3.2e-06 56.6 118 26.3
Glyma.20G220600 Glycine max HOM05D000215 ORTHO05D002282 3.2e-06 56.6 116 30.2
Lj1g0010870 Lotus japonicus HOM05D000215 ORTHO05D002282 3.2e-06 56.6 81 34.6
Medtr1g079450 Medicago truncatula HOM05D000215 ORTHO05D002282 3.2e-06 56.6 113 30.1
Nn1g06886 Nelumbo nucifera HOM05D000215 ORTHO05D007108 3.2e-06 56.6 103 33.0
Prupe.1G255000 Prunus persica HOM05D000215 ORTHO05D003454 3.2e-06 56.6 107 28.0
RcHm_v2.0_Chr4g0443981 Rosa chinensis HOM05D000215 ORTHO05D003454 3.2e-06 56.6 107 31.8
SEGI_07234 Sequoiadendron giganteum HOM05D034394 ORTHO05D037925 3.2e-06 56.6 57 54.4
TPR.G22888 Trifolium pratense HOM05D001700 ORTHO05D002131 3.2e-06 56.6 152 27.0
TAR627G1172 Trochodendron aralioides HOM05D000215 ORTHO05D007108 3.2e-06 56.6 103 36.9
AUR62038395 Chenopodium quinoa HOM05D000154 ORTHO05D000092 4.2e-06 56.2 112 33.0
FvH4_4g34620 Fragaria vesca HOM05D000215 ORTHO05D003454 4.2e-06 56.2 125 28.0
FAN12G0634 Fragaria x ananassa HOM05D000215 ORTHO05D003454 4.2e-06 56.2 125 28.0
Hma1.2p1_0176F.1_g077670 Hydrangea macrophylla HOM05D000215 ORTHO05D003454 4.2e-06 56.2 113 30.1
QL01p047315 Quercus lobata HOM05D000215 ORTHO05D002282 4.2e-06 56.2 104 27.9
CiPaw.05G150000 Carya illinoinensis HOM05D000215 ORTHO05D003454 5.5e-06 55.8 113 25.7
Haze_07494 Corylus avellana HOM05D000198 ORTHO05D003454 5.5e-06 55.8 116 28.4
FAN07G1479 Fragaria x ananassa HOM05D000215 ORTHO05D003454 5.5e-06 55.8 107 30.8
Gohir.D02G163200 Gossypium hirsutum HOM05D000215 ORTHO05D003454 5.5e-06 55.8 113 29.2
Gohir.D11G147500 Gossypium hirsutum HOM05D000215 ORTHO05D002282 5.5e-06 55.8 77 36.4
Gorai.005G183200 Gossypium raimondii HOM05D000215 ORTHO05D003454 5.5e-06 55.8 113 29.2
Gorai.007G157900 Gossypium raimondii HOM05D000215 ORTHO05D002282 5.5e-06 55.8 77 36.4
SalBow5G3737 Salvia bowleyana HOM05D001760 ORTHO05D001691 5.5e-06 55.8 170 27.1
SGA_v2.0_scaffold77G25280 Striga asiatica HOM05D000215 ORTHO05D002282 5.5e-06 55.8 111 28.8
VMungo1215G2056 Vigna mungo HOM05D000215 ORTHO05D003454 5.5e-06 55.8 113 28.3
Ah.14g086950 Amaranthus hybridus HOM05D000215 ORTHO05D002239 7.2e-06 55.5 115 30.4
Cpa.g.sc27.164 Carica papaya HOM05D000215 ORTHO05D007108 7.2e-06 55.5 101 31.7
DCAR_026544 Daucus carota HOM05D000215 ORTHO05D003454 7.2e-06 55.5 113 27.4
Gohir.A10G239100 Gossypium hirsutum HOM05D000215 ORTHO05D008904 7.2e-06 55.5 152 28.3
Gohir.D12G274000 Gossypium hirsutum HOM05D000215 ORTHO05D003454 7.2e-06 55.5 113 31.0
Gorai.008G294400 Gossypium raimondii HOM05D000215 ORTHO05D003454 7.2e-06 55.5 113 31.0
Oeu005345.1 Olea europaea HOM05D007843 ORTHO05D003639 7.2e-06 55.5 81 35.8
Rhsim12G0121400 Rhododendron simsii HOM05D000215 ORTHO05D003454 7.2e-06 55.5 113 29.2
Sc16g0010070 Simmondsia chinensis HOM05D000215 ORTHO05D002282 7.2e-06 55.5 104 31.7
Atru.chr11.2006 Acer truncatum HOM05D000215 ORTHO05D003454 9.4e-06 55.1 109 28.4
CSS0025946 Camellia sinensis var. sinensis HOM05D000215 ORTHO05D003454 9.4e-06 55.1 113 28.3
CANSAT54G1417 Cannabis sativa HOM05D000215 ORTHO05D002282 9.4e-06 55.1 105 31.4
AUR62012277 Chenopodium quinoa HOM05D000215 ORTHO05D008904 9.4e-06 55.1 82 39.0
Gorai.011G291400 Gossypium raimondii HOM05D000215 ORTHO05D008904 9.4e-06 55.1 152 28.9
Medtr4g091880 Medicago truncatula HOM05D000215 ORTHO05D007108 9.4e-06 55.1 131 30.5


User provided reference genes

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