Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 3.5e-86 321.6 168 100.0
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 5.9e-57 224.6 168 74.4
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.2e-41 173.7 166 59.6
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 2.0e-41 172.9 166 59.0
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.5e-41 171.8 166 59.0
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 4.5e-41 171.8 166 59.0
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 5.9e-41 171.4 168 56.5
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 5.9e-41 171.4 169 58.0
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 7.7e-41 171.0 166 58.4
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 1.0e-40 170.6 169 57.4
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 1.0e-40 170.6 166 57.2
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 1.0e-40 170.6 166 54.8
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 1.7e-40 169.9 166 56.6
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.7e-40 169.9 169 57.4
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 1.7e-40 169.9 170 57.6
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 1.7e-40 169.9 169 57.4
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 5.0e-40 168.3 166 56.0
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 5.0e-40 168.3 169 56.8
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 8.5e-40 167.5 169 56.8
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.1e-39 167.2 168 54.8
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 1.5e-39 166.8 168 55.4
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 1.5e-39 166.8 167 58.1
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.9e-39 166.4 166 55.4
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 1.9e-39 166.4 166 57.2
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 1.9e-39 166.4 166 57.8
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.9e-39 166.4 170 55.9
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 3.2e-39 165.6 166 55.4
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 3.2e-39 165.6 167 55.1
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 3.2e-39 165.6 171 55.0
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 4.2e-39 165.2 166 56.6
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 5.5e-39 164.9 168 56.5
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 5.5e-39 164.9 166 54.8
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 5.5e-39 164.9 169 56.2
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 5.5e-39 164.9 167 55.1
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 7.2e-39 164.5 166 53.6
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 7.2e-39 164.5 169 56.2
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 9.4e-39 164.1 168 55.4
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 1.2e-38 163.7 166 56.6
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 1.2e-38 163.7 169 55.0
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 1.2e-38 163.7 166 54.8
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 2.1e-38 162.9 166 53.0
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 3.6e-38 162.2 169 55.6
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 3.6e-38 162.2 167 55.1
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 3.6e-38 162.2 166 53.6
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 4.7e-38 161.8 166 54.2
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 4.7e-38 161.8 166 53.6
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 6.1e-38 161.4 166 54.2
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 6.1e-38 161.4 176 52.3
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 8.0e-38 161.0 168 53.0
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 8.0e-38 161.0 168 53.6
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 1.0e-37 160.6 167 54.5
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 1.0e-37 160.6 167 54.5
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 2.3e-37 159.5 168 52.4
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 2.3e-37 159.5 169 53.8
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 2.3e-37 159.5 165 55.8
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 3.0e-37 159.1 168 52.4
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 3.0e-37 159.1 171 53.2
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 3.0e-37 159.1 165 55.8
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 3.0e-37 159.1 167 55.7
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.0e-37 158.7 166 53.6
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 5.2e-37 158.3 166 53.6
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 5.2e-37 158.3 166 53.0
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 5.2e-37 158.3 170 52.4
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 6.7e-37 157.9 170 54.1
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 8.8e-37 157.5 170 52.9
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 8.8e-37 157.5 166 53.0
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 8.8e-37 157.5 167 52.1
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 8.8e-37 157.5 166 52.4
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 1.1e-36 157.1 170 53.5
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 1.1e-36 157.1 168 54.8
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 1.5e-36 156.8 166 53.6
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 2.0e-36 156.4 166 53.0
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 2.0e-36 156.4 168 51.8
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 2.0e-36 156.4 166 53.0
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 2.0e-36 156.4 172 54.1
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 2.0e-36 156.4 170 52.4
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 4.4e-36 155.2 170 52.9
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 4.4e-36 155.2 172 53.5
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 5.7e-36 154.8 171 52.0
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 9.7e-36 154.1 167 52.7
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.3e-35 153.7 166 52.4
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 1.7e-35 153.3 175 52.6
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 1.7e-35 153.3 168 53.0
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 2.8e-35 152.5 179 50.8
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 4.8e-35 151.8 169 52.1
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 6.3e-35 151.4 170 51.8
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.1e-34 150.6 168 50.6
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 1.1e-34 150.6 192 49.5
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 1.1e-34 150.6 168 51.2
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 1.4e-34 150.2 168 53.6
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 2.4e-34 149.4 181 49.7
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 2.4e-34 149.4 181 49.7
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.4e-34 149.4 168 50.0
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 3.1e-34 149.1 167 50.9
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 7.0e-34 147.9 164 53.0
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 1.2e-33 147.1 188 48.9
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 2.7e-33 146.0 176 50.0
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 3.5e-33 145.6 182 48.9
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.5e-33 145.2 174 51.1
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 7.7e-33 144.4 185 48.1
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 7.7e-33 144.4 185 48.1
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 7.7e-33 144.4 164 53.0
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 1.7e-32 143.3 166 50.0
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 2.2e-32 142.9 176 48.9
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 2.9e-32 142.5 169 49.7
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.8e-32 142.1 174 49.4
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 1.5e-31 140.2 178 48.9
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 4.2e-31 138.7 145 55.9
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 1.6e-30 136.7 208 40.9
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 2.1e-30 136.3 166 48.2
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 1.0e-29 134.0 169 48.5
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.8e-29 133.3 168 47.0
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 8.8e-29 131.0 143 54.5
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 2.0e-28 129.8 143 51.7
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 3.4e-28 129.0 158 51.9
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 4.4e-28 128.6 166 46.4
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 3.7e-27 125.6 170 44.1
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 3.7e-27 125.6 143 52.4
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 8.3e-27 124.4 148 52.0
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.1e-26 122.1 145 51.0
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 1.3e-24 117.1 142 50.7
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 2.2e-24 116.3 164 45.7
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 1.5e-23 113.6 164 46.3
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 2.5e-23 112.8 184 42.4
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 1.6e-22 110.2 138 49.3
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 8.0e-22 107.8 163 45.4
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 5.7e-20 101.7 127 48.8
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 3.7e-19 99.0 160 40.0
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.4e-18 97.1 146 40.4
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 4.1e-18 95.5 69 71.0
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 5.4e-18 95.1 125 48.0
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 7.0e-18 94.7 165 41.8
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.6e-17 93.6 69 69.6
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 5.9e-17 91.7 67 70.1
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 7.7e-17 91.3 165 38.8
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 7.7e-17 91.3 72 62.5
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.3e-16 90.5 67 68.7
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.3e-16 90.5 67 68.7
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 1.1e-15 87.4 84 57.1
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.5e-15 87.0 69 63.8
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.5e-15 87.0 65 69.2
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.9e-15 86.7 66 68.2
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 4.3e-15 85.5 168 36.3
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 9.5e-15 84.3 115 46.1
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 2.1e-14 83.2 160 38.1
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 3.6e-14 82.4 69 65.2
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 8.0e-14 81.3 115 45.2
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.8e-13 80.1 58 70.7
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 4.9e-11 72.0 87 49.4
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 9.2e-10 67.8 83 48.2
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 7.8e-09 64.7 55 58.2
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 9.5e-07 57.8 163 30.1
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 4.7e-06 55.5 128 33.6
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 8.0e-06 54.7 102 38.2
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 8.0e-06 54.7 102 38.2


User provided reference genes

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