Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_24869 Sequoiadendron giganteum HOM05D040374 ORTHO05D000769 2.6e-175 618.6 318 100.0
SEGI_15327 Sequoiadendron giganteum HOM05D000790 ORTHO05D000769 4.7e-39 166.0 146 49.3
SEGI_27325 Sequoiadendron giganteum HOM05D000790 ORTHO05D000769 8.8e-38 161.8 143 47.6
SEGI_23041 Sequoiadendron giganteum HOM05D000790 ORTHO05D000769 1.8e-35 154.1 146 45.9
SEGI_12696 Sequoiadendron giganteum HOM05D040374 ORTHO05D000769 1.8e-27 127.5 154 43.5
SEGI_16887 Sequoiadendron giganteum HOM05D000790 ORTHO05D007702 1.5e-21 107.8 211 30.8
SEGI_15555 Sequoiadendron giganteum HOM05D000790 ORTHO05D007702 2.4e-19 100.5 158 32.3
SEGI_39996 Sequoiadendron giganteum HOM05D000790 ORTHO05D007702 1.6e-18 97.8 152 31.6
THA.LOC104809973 Tarenaya hassleriana HOM05D000790 ORTHO05D007702 6.6e-17 92.4 147 34.7
SEGI_09959 Sequoiadendron giganteum HOM05D040374 ORTHO05D000769 8.6e-17 92.0 111 38.7
BcaB01g03750 Brassica carinata HOM05D000790 ORTHO05D000769 7.3e-16 89.0 146 32.2
Thhalv10017138m.g Eutrema salsugineum HOM05D000790 ORTHO05D000769 7.3e-16 89.0 174 29.9
TWI56G0540 Tripterygium wilfordii HOM05D000790 ORTHO05D007702 1.6e-15 87.8 218 29.8
AL4G34750 Arabidopsis lyrata HOM05D000790 ORTHO05D000769 4.7e-15 86.3 148 30.4
PGSC0003DMG400008815 Solanum tuberosum HOM05D000790 ORTHO05D000769 4.7e-15 86.3 143 32.2
BcaB06g29030 Brassica carinata HOM05D000790 ORTHO05D000769 6.2e-15 85.9 142 28.2
AT2G37805 Arabidopsis thaliana HOM05D000790 ORTHO05D000769 1.1e-14 85.1 142 32.4
TAR381G1025 Trochodendron aralioides HOM05D000790 ORTHO05D000769 1.1e-14 85.1 156 28.8
Rhsim06G0001300 Rhododendron simsii HOM05D000790 ORTHO05D007702 1.4e-14 84.7 184 29.9
BcaC01g05590 Brassica carinata HOM05D000790 ORTHO05D000769 1.8e-14 84.3 142 31.7
A03p20880 Brassica napus HOM05D000790 ORTHO05D000769 1.8e-14 84.3 142 31.7
C03p24530 Brassica napus HOM05D000790 ORTHO05D000769 1.8e-14 84.3 142 31.7
BolC3t14851H Brassica oleracea HOM05D000790 ORTHO05D000769 1.8e-14 84.3 142 31.7
Cfa001479 Carpinus fangiana HOM05D000790 ORTHO05D000769 1.8e-14 84.3 142 33.1
Hma1.2p1_0810F.1_g221960 Hydrangea macrophylla HOM05D000790 ORTHO05D007702 1.8e-14 84.3 192 30.7
SpUn0309_0030 Schrenkiella parvula HOM05D000790 ORTHO05D000769 1.8e-14 84.3 148 29.7
QL02p016125 Quercus lobata HOM05D000790 ORTHO05D007702 3.1e-14 83.6 221 29.0
AT2G37800 Arabidopsis thaliana HOM05D000790 ORTHO05D000769 8.9e-14 82.0 167 27.5
SalBow5G2161 Salvia bowleyana HOM05D000790 ORTHO05D000769 8.9e-14 82.0 144 30.6
ATR0605G171 Amborella trichopoda HOM05D000790 ORTHO05D000769 1.5e-13 81.3 156 29.5
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 2.0e-13 80.9 142 31.0
QL08p059279 Quercus lobata HOM05D000790 ORTHO05D000769 3.4e-13 80.1 153 30.7
Lalb_Chr10g0095261 Lupinus albus HOM05D000790 ORTHO05D007702 9.8e-13 78.6 147 30.6
AT2G37810 Arabidopsis thaliana HOM05D000790 ORTHO05D000769 1.7e-12 77.8 137 28.5
CiPaw.08G078600 Carya illinoinensis HOM05D000790 ORTHO05D007702 2.2e-12 77.4 128 33.6
Migut.J00283 Erythranthe guttata HOM05D000790 ORTHO05D000769 2.9e-12 77.0 145 31.0
Lj2g0003125 Lotus japonicus HOM05D000790 ORTHO05D007702 2.9e-12 77.0 225 25.3
PSO017G2965 Papaver somniferum HOM05D000790 ORTHO05D007702 2.9e-12 77.0 224 29.0
Hund05065 Selenicereus undatus HOM05D000790 ORTHO05D007702 2.9e-12 77.0 198 28.3
Actinidia09256 Actinidia chinensis HOM05D000790 ORTHO05D000769 4.9e-12 76.3 128 29.7
Manes.18G000825 Manihot esculenta HOM05D000790 ORTHO05D007702 4.9e-12 76.3 149 28.9
ATR0605G280 Amborella trichopoda HOM05D000790 ORTHO05D007702 6.4e-12 75.9 191 28.3
Ciclev10001981m.g Citrus clementina HOM05D000790 ORTHO05D007702 6.4e-12 75.9 200 26.5
Nitab4.5_0003098g0090 Nicotiana tabacum HOM05D000790 ORTHO05D000769 6.4e-12 75.9 145 28.3
THA.LOC104807012 Tarenaya hassleriana HOM05D000790 ORTHO05D000769 6.4e-12 75.9 142 28.9
vmacro21740 Vaccinium macrocarpon HOM05D000790 ORTHO05D007702 6.4e-12 75.9 232 26.3
Actinidia15545 Actinidia chinensis HOM05D000790 ORTHO05D007702 8.3e-12 75.5 261 25.7
Aqoxy6G03054 Aquilegia oxysepala HOM05D000790 ORTHO05D007702 8.3e-12 75.5 130 33.1
SalBow5G3773 Salvia bowleyana HOM05D000790 ORTHO05D000769 8.3e-12 75.5 139 30.9
SalBow7G0878 Salvia bowleyana HOM05D000790 ORTHO05D007702 8.3e-12 75.5 159 30.8
Migut.J00282 Erythranthe guttata HOM05D000790 ORTHO05D000769 1.1e-11 75.1 144 33.3
PGR031G2809 Punica granatum HOM05D000790 ORTHO05D007702 1.1e-11 75.1 220 25.5
PSO170G3378 Papaver somniferum HOM05D000790 ORTHO05D007702 1.9e-11 74.3 165 30.9
PGR142G0838 Punica granatum HOM05D000790 ORTHO05D000769 1.9e-11 74.3 146 28.1
Dinv26010 Davidia involucrata HOM05D000790 ORTHO05D000769 2.4e-11 73.9 151 30.5
Nn5g31075 Nelumbo nucifera HOM05D000790 ORTHO05D007702 2.4e-11 73.9 145 26.9
RcHm_v2.0_Chr7g0217421 Rosa chinensis HOM05D000790 ORTHO05D007702 2.4e-11 73.9 148 27.7
Actinidia01821 Actinidia chinensis HOM05D000790 ORTHO05D000769 3.2e-11 73.6 140 29.3
A04p28950 Brassica napus HOM05D000790 ORTHO05D000769 4.1e-11 73.2 107 34.6
CiPaw.05G059800 Carya illinoinensis HOM05D000790 ORTHO05D000769 4.1e-11 73.2 146 28.1
Dinv05512 Davidia involucrata HOM05D000790 ORTHO05D007702 4.1e-11 73.2 202 28.2
Oeu002053.1 Olea europaea HOM05D000125 ORTHO05D000807 4.1e-11 73.2 151 31.1
Actinidia17094 Actinidia chinensis HOM05D000790 ORTHO05D007702 5.4e-11 72.8 189 28.0
BraA04t17144Z Brassica rapa HOM05D000790 ORTHO05D000769 5.4e-11 72.8 116 31.9
Oeu035779.1 Olea europaea HOM05D000790 ORTHO05D007702 5.4e-11 72.8 232 24.1
BcaC02g08913 Brassica carinata HOM05D000790 ORTHO05D000769 7.0e-11 72.4 116 31.0
BolC4t28124H Brassica oleracea HOM05D000790 ORTHO05D000769 7.0e-11 72.4 116 31.9
CiPaw.05G095600 Carya illinoinensis HOM05D000790 ORTHO05D000769 7.0e-11 72.4 148 29.1
TAR633G2066 Trochodendron aralioides HOM05D000790 ORTHO05D000769 7.0e-11 72.4 113 32.7
Peaxi162Scf00385g00096 Petunia axillaris HOM05D000790 ORTHO05D007702 9.2e-11 72.0 280 25.7
Atru.chr12.479 Acer truncatum HOM05D000790 ORTHO05D000769 1.2e-10 71.6 110 32.7
C04p66210 Brassica napus HOM05D000790 ORTHO05D000769 1.6e-10 71.2 116 31.9
TAR381G1234 Trochodendron aralioides HOM05D000790 ORTHO05D000769 1.6e-10 71.2 153 29.4
BcaC02g08912 Brassica carinata HOM05D000790 ORTHO05D000769 2.1e-10 70.9 116 31.0
BcaC02g08914 Brassica carinata HOM05D000790 ORTHO05D000769 2.1e-10 70.9 116 31.0
C04p49180 Brassica napus HOM05D000790 ORTHO05D000769 2.1e-10 70.9 116 31.0
C04p49240 Brassica napus HOM05D000790 ORTHO05D000769 2.1e-10 70.9 116 31.0
C04p49260 Brassica napus HOM05D000790 ORTHO05D000769 2.1e-10 70.9 116 31.0
C04p49270 Brassica napus HOM05D000790 ORTHO05D000769 2.1e-10 70.9 116 31.0
BolC4t26503H Brassica oleracea HOM05D000790 ORTHO05D000769 2.1e-10 70.9 116 31.0
BolC4t26508H Brassica oleracea HOM05D000790 ORTHO05D000769 2.1e-10 70.9 116 31.0
BolC4t26509H Brassica oleracea HOM05D000790 ORTHO05D000769 2.1e-10 70.9 116 31.0
Thhalv10024646m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 2.1e-10 70.9 138 25.4
FvH4_5g26520 Fragaria vesca HOM05D000790 ORTHO05D007702 2.1e-10 70.9 130 30.0
FAN13G0773 Fragaria x ananassa HOM05D000790 ORTHO05D007702 2.1e-10 70.9 130 30.0
GSVIVG01013453001 Vitis vinifera HOM05D000790 ORTHO05D007702 2.1e-10 70.9 188 25.5
BraA04t17142Z Brassica rapa HOM05D000790 ORTHO05D000769 2.7e-10 70.5 116 31.0
BraA03t11328Z Brassica rapa HOM05D000790 ORTHO05D000769 3.5e-10 70.1 108 34.3
BraA04t17143Z Brassica rapa HOM05D000790 ORTHO05D000769 3.5e-10 70.1 116 30.2
CsaV3_4G037770 Cucumis sativus L. HOM05D000790 ORTHO05D007702 3.5e-10 70.1 169 27.8
MBI04_g22021_MAGBIO Magnolia biondii HOM05D000790 ORTHO05D007702 3.5e-10 70.1 253 24.9
Manes.05G130200 Manihot esculenta HOM05D000790 ORTHO05D007702 3.5e-10 70.1 238 25.2
MELO3C017071.2 Cucumis melo HOM05D000790 ORTHO05D007702 4.6e-10 69.7 130 30.8
C04p49210 Brassica napus HOM05D000790 ORTHO05D000769 6.0e-10 69.3 116 31.0
BolC4t26505H Brassica oleracea HOM05D000790 ORTHO05D000769 6.0e-10 69.3 116 31.0
CSS0047487 Camellia sinensis var. sinensis HOM05D000790 ORTHO05D007702 6.0e-10 69.3 153 30.7
CiPaw.01G286900 Carya illinoinensis HOM05D000790 ORTHO05D000769 6.0e-10 69.3 146 29.5
CiPaw.06G138400 Carya illinoinensis HOM05D000790 ORTHO05D000769 6.0e-10 69.3 156 25.6
Migut.B01372 Erythranthe guttata HOM05D000125 ORTHO05D000807 6.0e-10 69.3 138 29.0
CANSAT25G2677 Cannabis sativa HOM05D000790 ORTHO05D000769 7.8e-10 68.9 147 26.5
Dinv02626 Davidia involucrata HOM05D000790 ORTHO05D007702 7.8e-10 68.9 132 31.1
MD06G1001400 Malus domestica HOM05D000790 ORTHO05D007702 1.0e-09 68.6 165 27.9
Os08g0396700 Oryza sativa ssp. japonica HOM05D000790 ORTHO05D000769 1.0e-09 68.6 158 29.7
QL08p059291 Quercus lobata HOM05D000790 ORTHO05D000769 1.0e-09 68.6 146 28.8
FAN18G0268 Fragaria x ananassa HOM05D000790 ORTHO05D007702 1.7e-09 67.8 193 29.0
MD00G1031500 Malus domestica HOM05D000790 ORTHO05D007702 1.7e-09 67.8 154 26.6
Prupe.5G002200 Prunus persica HOM05D000790 ORTHO05D007702 1.7e-09 67.8 135 28.1
QL07p043969 Quercus lobata HOM05D000790 ORTHO05D000769 1.7e-09 67.8 151 28.5
ClCG11G019180 Citrullus lanatus HOM05D000790 ORTHO05D007702 2.3e-09 67.4 235 26.0
Sopen04g036570 Solanum pennellii HOM05D000790 ORTHO05D007702 3.0e-09 67.0 208 26.4
VMungo1383G0212 Vigna mungo HOM05D000790 ORTHO05D000769 3.0e-09 67.0 140 29.3
Nitab4.5_0009514g0010 Nicotiana tabacum HOM05D000790 ORTHO05D007702 3.9e-09 66.6 214 26.2
Potri.005G258800 Populus trichocarpa HOM05D000790 ORTHO05D007702 3.9e-09 66.6 133 32.3
Sabra05G0200400 Salix brachista HOM05D000790 ORTHO05D007702 3.9e-09 66.6 153 30.1
Migut.C00338 Erythranthe guttata HOM05D000790 ORTHO05D007702 5.1e-09 66.2 179 27.9
CANSAT25G0773 Cannabis sativa HOM05D000790 ORTHO05D000769 6.6e-09 65.9 147 25.9
CANSAT25G2520 Cannabis sativa HOM05D000790 ORTHO05D007702 6.6e-09 65.9 171 24.6
Solyc04g082940.3 Solanum lycopersicum HOM05D000790 ORTHO05D007702 6.6e-09 65.9 197 26.4
A08p12320 Brassica napus HOM05D000125 ORTHO05D000807 8.6e-09 65.5 159 28.9
BraA08t33224Z Brassica rapa HOM05D000125 ORTHO05D000807 8.6e-09 65.5 159 28.9
CSS0007777 Camellia sinensis var. sinensis HOM05D000125 ORTHO05D000807 1.1e-08 65.1 149 28.9
Actinidia17275 Actinidia chinensis HOM05D000125 ORTHO05D000120 1.5e-08 64.7 138 30.4
CsaV3_5G026610 Cucumis sativus L. HOM05D000790 ORTHO05D000769 1.9e-08 64.3 140 30.0
SalBow6G4524 Salvia bowleyana HOM05D000125 ORTHO05D000807 3.3e-08 63.5 145 29.0
Migut.B01375 Erythranthe guttata HOM05D000125 ORTHO05D000807 4.3e-08 63.2 113 31.0
SEGI_28845 Sequoiadendron giganteum HOM05D001511 ORTHO05D002368 4.3e-08 63.2 44 68.2
A04p32500 Brassica napus HOM05D000125 ORTHO05D000120 7.3e-08 62.4 138 33.3
PGSC0003DMG400010010 Solanum tuberosum HOM05D000790 ORTHO05D007702 7.3e-08 62.4 281 24.6
Peaxi162Scf00878g00112 Petunia axillaris HOM05D000125 ORTHO05D000807 9.5e-08 62.0 119 30.3
Migut.B01374 Erythranthe guttata HOM05D000125 ORTHO05D000807 2.1e-07 60.8 153 26.8
Hma1.2p1_3092F.1_g332570 Hydrangea macrophylla HOM05D000790 ORTHO05D000769 2.1e-07 60.8 144 26.4
Sc14g0001630 Simmondsia chinensis HOM05D000790 ORTHO05D000769 2.1e-07 60.8 114 28.1
Thecc.05G282500 Theobroma cacao HOM05D000125 ORTHO05D009513 2.1e-07 60.8 146 28.8
CAN.G1330.28 Capsicum annuum HOM05D000790 ORTHO05D007702 2.8e-07 60.5 169 26.0
Cc02_g27020 Coffea canephora HOM05D000125 ORTHO05D000807 2.8e-07 60.5 161 28.0
Thhalv10012175m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 2.8e-07 60.5 133 26.3
Nitab4.5_0003098g0020 Nicotiana tabacum HOM05D000790 ORTHO05D000769 2.8e-07 60.5 113 30.1
Actinidia31705 Actinidia chinensis HOM05D000463 ORTHO05D000807 3.6e-07 60.1 150 28.7
Carub.0005s0273 Capsella rubella HOM05D000125 ORTHO05D000120 8.1e-07 58.9 163 23.3
Sed0025270 Sechium edule HOM05D000790 ORTHO05D007702 8.1e-07 58.9 141 25.5
DCAR_022407 Daucus carota HOM05D000125 ORTHO05D000120 1.1e-06 58.5 148 27.0
Thhalv10001923m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 1.1e-06 58.5 139 28.8
AT2G37780 Arabidopsis thaliana HOM05D000790 ORTHO05D000769 1.4e-06 58.2 105 28.6
Carub.0004s1972 Capsella rubella HOM05D000790 ORTHO05D000769 1.4e-06 58.2 197 27.4
AL4G34710 Arabidopsis lyrata HOM05D000790 ORTHO05D000769 1.8e-06 57.8 101 28.7
BcaC09g51610 Brassica carinata HOM05D000125 ORTHO05D000120 1.8e-06 57.8 95 26.3
BolC1t01114H Brassica oleracea HOM05D000125 ORTHO05D000120 1.8e-06 57.8 95 26.3
ClCG10G012690 Citrullus lanatus HOM05D000125 ORTHO05D000807 1.8e-06 57.8 119 32.8
Gohir.D07G088500 Gossypium hirsutum HOM05D000125 ORTHO05D000120 1.8e-06 57.8 151 29.1
Gorai.001G094700 Gossypium raimondii HOM05D000125 ORTHO05D000120 1.8e-06 57.8 151 29.1
TAR629G2081 Trochodendron aralioides HOM05D000790 ORTHO05D000769 1.8e-06 57.8 144 27.1
Thhalv10027008m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 2.3e-06 57.4 134 26.9
CARHR131750 Cardamine hirsuta HOM05D000790 ORTHO05D000769 3.1e-06 57.0 112 30.4
Aa31LG9G15540 Aethionema arabicum HOM05D000125 ORTHO05D000120 4.0e-06 56.6 144 26.4
CSS0004983 Camellia sinensis var. sinensis HOM05D000125 ORTHO05D000120 5.2e-06 56.2 109 29.4
CsaV3_3G032540 Cucumis sativus L. HOM05D000125 ORTHO05D000807 5.2e-06 56.2 121 33.1
Lju124C25G11 Lonicera japonica HOM05D000125 ORTHO05D000807 5.2e-06 56.2 158 25.9
Sed0010956 Sechium edule HOM05D000125 ORTHO05D000807 5.2e-06 56.2 141 29.8
HPP92_019644 Vanilla planifolia HOM05D000790 ORTHO05D000769 5.2e-06 56.2 119 28.6
Gohir.A11G276566 Gossypium hirsutum HOM05D000768 ORTHO05D009513 6.8e-06 55.8 107 30.8
SEGI_14876 Sequoiadendron giganteum HOM05D000790 ORTHO05D000769 8.9e-06 55.5 99 32.3
Thecc.05G268400 Theobroma cacao HOM05D000125 ORTHO05D009513 8.9e-06 55.5 126 26.2


User provided reference genes

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