Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_24866 Sequoiadendron giganteum HOM05D007420 ORTHO05D009353 5.8e-56 220.7 116 100.0
Glyma.05G010400 Glycine max HOM05D007420 ORTHO05D009353 5.3e-17 91.3 90 54.4
Gorai.010G066200 Gossypium raimondii HOM05D007420 ORTHO05D009353 1.6e-16 89.7 73 60.3
arahy.Tifrunner.gnm1.ann1.XPL4AE Arachis hypogaea HOM05D007420 ORTHO05D009353 2.0e-16 89.4 68 66.2
arahy.Tifrunner.gnm1.ann1.QR7ILI Arachis hypogaea HOM05D007420 ORTHO05D009353 2.7e-16 89.0 68 66.2
Manes.06G052500 Manihot esculenta HOM05D007420 ORTHO05D009353 3.5e-16 88.6 77 58.4
Ciclev10009973m.g Citrus clementina HOM05D007420 ORTHO05D009353 4.5e-16 88.2 77 61.0
Actinidia22015 Actinidia chinensis HOM05D007420 ORTHO05D009353 7.7e-16 87.4 74 62.2
Dinv36572 Davidia involucrata HOM05D007420 ORTHO05D009353 7.7e-16 87.4 76 60.5
FAN23G1905 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.0e-15 87.0 70 61.4
FAN26G1322 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.0e-15 87.0 70 61.4
FAN28G1248 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.0e-15 87.0 70 61.4
FAN22G2307 Fragaria x ananassa HOM05D022909 ORTHO05D009353 1.3e-15 86.7 70 61.4
Cc06_g08970 Coffea canephora HOM05D007420 ORTHO05D009353 1.7e-15 86.3 64 67.2
Thecc.09G120400 Theobroma cacao HOM05D007420 ORTHO05D009353 1.7e-15 86.3 68 63.2
QL02p087339 Quercus lobata HOM05D007420 ORTHO05D009353 2.2e-15 85.9 68 66.2
THA.LOC104809007 Tarenaya hassleriana HOM05D007420 ORTHO05D009353 2.9e-15 85.5 68 63.2
A07p31870 Brassica napus HOM05D007420 ORTHO05D009353 3.8e-15 85.1 72 62.5
Potri.011G024500 Populus trichocarpa HOM05D007420 ORTHO05D009353 3.8e-15 85.1 69 65.2
Cfa003340 Carpinus fangiana HOM05D007420 ORTHO05D009353 6.5e-15 84.3 75 61.3
MD02G1037600 Malus domestica HOM05D007420 ORTHO05D009353 6.5e-15 84.3 89 50.6
Nn8g39361 Nelumbo nucifera HOM05D007420 ORTHO05D009353 6.5e-15 84.3 77 55.8
Atru.chr7.1239 Acer truncatum HOM05D007420 ORTHO05D009353 8.5e-15 84.0 68 64.7
DCAR_014860 Daucus carota HOM05D007420 ORTHO05D009353 8.5e-15 84.0 71 60.6
Eucgr.L02717 Eucalyptus grandis HOM05D007420 ORTHO05D009353 8.5e-15 84.0 76 55.3
unitig_85.g27256 Utricularia gibba HOM05D000953 ORTHO05D000231 8.5e-15 84.0 75 58.7
MELO3C004528.2 Cucumis melo HOM05D007420 ORTHO05D009353 1.1e-14 83.6 72 59.7
Eucgr.C01298 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.1e-14 83.6 76 55.3
SalBow1G2150 Salvia bowleyana HOM05D007420 ORTHO05D009353 1.5e-14 83.2 53 73.6
Migut.L01525 Erythranthe guttata HOM05D007420 ORTHO05D009353 1.9e-14 82.8 59 67.8
SalBow6G6280 Salvia bowleyana HOM05D007420 ORTHO05D009353 1.9e-14 82.8 57 66.7
CiPaw.03G239800 Carya illinoinensis HOM05D007420 ORTHO05D009353 2.5e-14 82.4 68 64.7
Hma1.2p1_0018F.1_g012820 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 2.5e-14 82.4 71 60.6
CANSAT56G4260 Cannabis sativa HOM05D007420 ORTHO05D009353 3.2e-14 82.0 68 61.8
FvH4_1g03930 Fragaria vesca HOM05D007420 ORTHO05D009353 3.2e-14 82.0 72 59.7
FAN19G3121 Fragaria x ananassa HOM05D007420 ORTHO05D009353 3.2e-14 82.0 76 53.9
Nn2g11931 Nelumbo nucifera HOM05D007420 ORTHO05D009353 3.2e-14 82.0 70 68.6
Oeu021594.1 Olea europaea HOM05D007420 ORTHO05D009353 4.2e-14 81.6 77 55.8
PGR102G0502 Punica granatum HOM05D007420 ORTHO05D009353 4.2e-14 81.6 82 53.7
Sc14g0000270 Simmondsia chinensis HOM05D007420 ORTHO05D009353 4.2e-14 81.6 64 60.9
Aa31sc12G90 Aethionema arabicum HOM05D007420 ORTHO05D009353 5.5e-14 81.3 73 57.5
Gohir.A06G058200 Gossypium hirsutum HOM05D007420 ORTHO05D009353 5.5e-14 81.3 67 61.2
Gohir.D06G056500 Gossypium hirsutum HOM05D007420 ORTHO05D009353 5.5e-14 81.3 67 61.2
Nitab4.5_0000750g0050 Nicotiana tabacum HOM05D007420 ORTHO05D009353 5.5e-14 81.3 68 57.4
RcHm_v2.0_Chr2g0089401 Rosa chinensis HOM05D007420 ORTHO05D009353 9.4e-14 80.5 76 53.9
TPR.G9078 Trifolium pratense HOM05D007420 ORTHO05D009353 1.2e-13 80.1 67 58.2
HanXRQChr03g0062071 Helianthus annuus HOM05D007420 ORTHO05D009353 2.1e-13 79.3 69 63.8
Nitab4.5_0001193g0010 Nicotiana tabacum HOM05D007420 ORTHO05D009353 2.1e-13 79.3 67 56.7
Haze_25622 Corylus avellana HOM05D007420 ORTHO05D009353 2.7e-13 79.0 70 60.0
CSS0016223 Camellia sinensis var. sinensis HOM05D007420 ORTHO05D009353 3.6e-13 78.6 68 60.3
Thhalv10019233m.g Eutrema salsugineum HOM05D007420 ORTHO05D009353 3.6e-13 78.6 68 61.8
BcaB03g15439 Brassica carinata HOM05D007420 ORTHO05D009353 4.7e-13 78.2 67 62.7
Phvul.003G161000 Phaseolus vulgaris HOM05D007420 ORTHO05D009353 4.7e-13 78.2 68 58.8
Sabra11G0015300 Salix brachista HOM05D007420 ORTHO05D009353 4.7e-13 78.2 86 51.2
HPP92_024085 Vanilla planifolia HOM05D007420 ORTHO05D009353 4.7e-13 78.2 75 60.0
BcaB03g15440 Brassica carinata HOM05D007420 ORTHO05D009353 6.1e-13 77.8 68 61.8
BcaC08g45947 Brassica carinata HOM05D007420 ORTHO05D009353 6.1e-13 77.8 68 61.8
C06p37440 Brassica napus HOM05D007420 ORTHO05D032647 6.1e-13 77.8 68 61.8
BolC6t38847H Brassica oleracea HOM05D007420 ORTHO05D009353 6.1e-13 77.8 68 61.8
Pp3c11_6600 Physcomitrium patens HOM05D007420 ORTHO05D009353 6.1e-13 77.8 62 56.5
Sed0006703 Sechium edule HOM05D007420 ORTHO05D009353 6.1e-13 77.8 68 61.8
CsaV3_2G002630 Cucumis sativus L. HOM05D007420 ORTHO05D009353 8.0e-13 77.4 53 73.6
Lj4g0001906 Lotus japonicus HOM05D007420 ORTHO05D009353 8.0e-13 77.4 50 72.0
Lalb_Chr13g0302091 Lupinus albus HOM05D007420 ORTHO05D009353 8.0e-13 77.4 77 51.9
Prupe.7G237700 Prunus persica HOM05D007420 ORTHO05D009353 8.0e-13 77.4 71 60.6
AL2G27600 Arabidopsis lyrata HOM05D007420 ORTHO05D009353 1.0e-12 77.0 68 61.8
ECA240G1805 Erigeron canadensis HOM05D007420 ORTHO05D009353 1.0e-12 77.0 72 58.3
Sp5g23780 Schrenkiella parvula HOM05D007420 ORTHO05D009353 1.0e-12 77.0 68 61.8
AagrBONN_evm.TU.Sc2ySwM_362.2614 Anthoceros agrestis HOM05D007420 ORTHO05D009353 1.4e-12 76.6 66 59.1
Carub.0002s1522 Capsella rubella HOM05D007420 ORTHO05D009353 1.4e-12 76.6 77 54.5
TWI32G1185 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 1.4e-12 76.6 69 58.0
BraA07t30816Z Brassica rapa HOM05D007420 ORTHO05D009353 1.8e-12 76.3 94 48.9
ClCG11G002810 Citrullus lanatus HOM05D007420 ORTHO05D009353 1.8e-12 76.3 68 60.3
Duzib150G1214 Durio zibethinus HOM05D007420 ORTHO05D009353 1.8e-12 76.3 57 61.4
Eucgr.C01109 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.8e-12 76.3 73 53.4
AT1G68680 Arabidopsis thaliana HOM05D007420 ORTHO05D009353 2.3e-12 75.9 68 61.8
CARHR061490 Cardamine hirsuta HOM05D007420 ORTHO05D009353 2.3e-12 75.9 68 60.3
MD15G1177800 Malus domestica HOM05D007420 ORTHO05D009353 2.3e-12 75.9 82 48.8
CDE01G0426 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 3.0e-12 75.5 77 53.2
Eucgr.C01288 Eucalyptus grandis HOM05D007420 ORTHO05D009353 3.0e-12 75.5 55 61.8
Mapoly0048s0106 Marchantia polymorpha HOM05D007420 ORTHO05D009353 3.0e-12 75.5 78 52.6
TWI34G1269 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 3.0e-12 75.5 69 60.9
CDE03G0079 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 5.2e-12 74.7 61 60.7
EL10Ac8g18588 Beta vulgaris HOM05D007420 ORTHO05D009353 6.8e-12 74.3 64 59.4
CAN.G1424.4 Capsicum annuum HOM05D007420 ORTHO05D009353 8.8e-12 73.9 65 55.4
Hma1.2p1_0018F.1_g012830 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 8.8e-12 73.9 55 63.6
Peaxi162Scf00361g00611 Petunia axillaris HOM05D007420 ORTHO05D009353 1.2e-11 73.6 56 62.5
vmacro20648 Vaccinium macrocarpon HOM05D007420 ORTHO05D009353 1.5e-11 73.2 93 52.7
PSO170G5167 Papaver somniferum HOM05D007420 ORTHO05D009353 2.0e-11 72.8 52 63.5
GSVIVG01015481001 Vitis vinifera HOM05D007420 ORTHO05D009353 2.0e-11 72.8 76 52.6
Solyc07g005430.3 Solanum lycopersicum HOM05D007420 ORTHO05D009353 4.4e-11 71.6 59 59.3
Sopen07g001360 Solanum pennellii HOM05D007420 ORTHO05D009353 4.4e-11 71.6 59 59.3
Psat4g040560 Pisum sativum HOM05D007420 ORTHO05D009353 7.5e-11 70.9 74 52.7
Hund09157 Selenicereus undatus HOM05D007420 ORTHO05D009353 1.7e-10 69.7 67 56.7
Zm00001eb283090 Zea mays HOM05D007420 ORTHO05D009353 8.3e-10 67.4 82 45.1
SHI28897 Sapria himalayana HOM05D007420 ORTHO05D009353 1.1e-09 67.0 95 43.2
PGSC0003DMG401011174 Solanum tuberosum HOM05D007420 ORTHO05D009353 4.1e-09 65.1 80 45.0
CBR_g3296 Chara braunii HOM05D007420 ORTHO05D009353 5.4e-09 64.7 74 51.4
AUR62033448 Chenopodium quinoa HOM05D007420 ORTHO05D009353 5.4e-09 64.7 69 53.6
Os05g0176600 Oryza sativa ssp. japonica HOM05D007420 ORTHO05D009353 5.0e-07 58.2 43 65.1
Eucgr.C01292 Eucalyptus grandis HOM05D007420 ORTHO05D009353 7.2e-06 54.3 33 69.7


User provided reference genes

Program Settings