Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_24830 Sequoiadendron giganteum HOM05D002586 ORTHO05D007521 3.1e-72 275.0 139 100.0
MBI01_g20396_MAGBIO Magnolia biondii HOM05D002586 ORTHO05D007521 6.4e-09 64.7 43 65.1
CSS0035000 Camellia sinensis var. sinensis HOM05D002586 ORTHO05D007521 1.1e-08 63.9 42 71.4
Lj7A641G78 Lonicera japonica HOM05D002586 ORTHO05D007521 1.4e-08 63.5 42 66.7
FAN23G1201 Fragaria x ananassa HOM05D000417 ORTHO05D007521 2.4e-08 62.8 46 65.2
Gorai.010G068800 Gossypium raimondii HOM05D000417 ORTHO05D000342 4.2e-08 62.0 46 65.2
Actinidia17483 Actinidia chinensis HOM05D002586 ORTHO05D007521 7.1e-08 61.2 42 66.7
Duzib187G1530 Durio zibethinus HOM05D002586 ORTHO05D007521 7.1e-08 61.2 41 68.3
Gohir.A06G060550 Gossypium hirsutum HOM05D000417 ORTHO05D007521 7.1e-08 61.2 46 65.2
vmacro06194 Vaccinium macrocarpon HOM05D002586 ORTHO05D007521 7.1e-08 61.2 42 66.7
ATR0605G072 Amborella trichopoda HOM05D002586 ORTHO05D007521 9.3e-08 60.8 49 55.1
Dinv41576 Davidia involucrata HOM05D005850 ORTHO05D007405 9.3e-08 60.8 52 53.8
Hma1.2p1_1968F.1_g309480 Hydrangea macrophylla HOM05D002586 ORTHO05D007521 9.3e-08 60.8 46 58.7
Hma1.2p1_1968F.1_g309470 Hydrangea macrophylla HOM05D002586 ORTHO05D007521 1.2e-07 60.5 42 61.9
Rhsim03G0244900 Rhododendron simsii HOM05D002586 ORTHO05D007521 1.2e-07 60.5 42 64.3
Thecc.09G114900 Theobroma cacao HOM05D002586 ORTHO05D007521 1.2e-07 60.5 46 63.0
TAR383G0369 Trochodendron aralioides HOM05D002586 ORTHO05D007521 1.2e-07 60.5 55 50.9
COL.COLO4_34935 Corchorus olitorius HOM05D002586 ORTHO05D007521 1.6e-07 60.1 42 66.7
QL02p086119 Quercus lobata HOM05D002586 ORTHO05D007521 2.1e-07 59.7 48 58.3
Ah.09g227010 Amaranthus hybridus HOM05D002586 ORTHO05D007521 2.7e-07 59.3 46 56.5
CANSAT56G1449 Cannabis sativa HOM05D002586 ORTHO05D007521 2.7e-07 59.3 36 75.0
FvH4_1g05380 Fragaria vesca HOM05D002586 ORTHO05D007521 2.7e-07 59.3 35 77.1
FAN19G1865 Fragaria x ananassa HOM05D002586 ORTHO05D007521 2.7e-07 59.3 35 77.1
FAN26G0906 Fragaria x ananassa HOM05D002586 ORTHO05D007521 2.7e-07 59.3 35 77.1
FAN26G3367 Fragaria x ananassa HOM05D002586 ORTHO05D007521 2.7e-07 59.3 35 77.1
AT3G56120 Arabidopsis thaliana HOM05D002586 ORTHO05D007521 3.5e-07 58.9 42 66.7
BcaC07g39927 Brassica carinata HOM05D002586 ORTHO05D007521 3.5e-07 58.9 35 77.1
A09p49100 Brassica napus HOM05D002586 ORTHO05D007521 3.5e-07 58.9 35 77.1
BolC8t50763H Brassica oleracea HOM05D002586 ORTHO05D007521 3.5e-07 58.9 35 77.1
BraA09t40362Z Brassica rapa HOM05D002586 ORTHO05D007521 3.5e-07 58.9 35 77.1
Carub.0005s2287 Capsella rubella HOM05D002586 ORTHO05D007521 3.5e-07 58.9 42 66.7
CARHR166270 Cardamine hirsuta HOM05D002586 ORTHO05D007521 3.5e-07 58.9 42 66.7
CiPaw.03G235200 Carya illinoinensis HOM05D002586 ORTHO05D007521 3.5e-07 58.9 35 71.4
AUR62011030 Chenopodium quinoa HOM05D002586 ORTHO05D007521 3.5e-07 58.9 42 61.9
AUR62033403 Chenopodium quinoa HOM05D002586 ORTHO05D007521 3.5e-07 58.9 42 61.9
Manes.16G065000 Manihot esculenta HOM05D002586 ORTHO05D007521 3.5e-07 58.9 35 77.1
RcHm_v2.0_Chr2g0091071 Rosa chinensis HOM05D002586 ORTHO05D007521 3.5e-07 58.9 35 77.1
AL5G37440 Arabidopsis lyrata HOM05D002586 ORTHO05D007521 4.6e-07 58.5 35 77.1
CSS0041277 Camellia sinensis var. sinensis HOM05D002586 ORTHO05D007521 4.6e-07 58.5 42 66.7
ClCG11G002640 Citrullus lanatus HOM05D002586 ORTHO05D007521 4.6e-07 58.5 41 65.9
MELO3C004542.2 Cucumis melo HOM05D002586 ORTHO05D007521 4.6e-07 58.5 41 65.9
CsaV3_2G002470 Cucumis sativus L. HOM05D002586 ORTHO05D007521 4.6e-07 58.5 41 65.9
Manes.03G068300 Manihot esculenta HOM05D002586 ORTHO05D007521 4.6e-07 58.5 45 62.2
Sp5g06410 Schrenkiella parvula HOM05D002586 ORTHO05D007521 4.6e-07 58.5 35 77.1
GSVIVG01015435001 Vitis vinifera HOM05D000417 ORTHO05D000342 4.6e-07 58.5 42 59.5
arahy.Tifrunner.gnm1.ann1.0DQ71P Arachis hypogaea HOM05D002586 ORTHO05D007521 6.0e-07 58.2 42 64.3
EL10Ac8g18544 Beta vulgaris HOM05D002586 ORTHO05D007521 6.0e-07 58.2 42 59.5
BcaB01g00029 Brassica carinata HOM05D002586 ORTHO05D007521 6.0e-07 58.2 35 77.1
Thhalv10005971m.g Eutrema salsugineum HOM05D002586 ORTHO05D007521 6.0e-07 58.2 35 77.1
Sed0019430 Sechium edule HOM05D002586 ORTHO05D007521 6.0e-07 58.2 35 71.4
Lsat_1_v5_gn_5_99861 Lactuca sativa HOM05D002586 ORTHO05D007521 7.9e-07 57.8 42 59.5
Potri.018G072200 Populus trichocarpa HOM05D002586 ORTHO05D007521 7.9e-07 57.8 42 64.3
Solyc05g006200.4 Solanum lycopersicum HOM05D002586 ORTHO05D007521 7.9e-07 57.8 41 61.0
Sopen05g002210 Solanum pennellii HOM05D002586 ORTHO05D007521 7.9e-07 57.8 41 61.0
PGSC0003DMG402015580 Solanum tuberosum HOM05D002586 ORTHO05D007521 7.9e-07 57.8 41 61.0
MD02G1062400 Malus domestica HOM05D002586 ORTHO05D007521 1.0e-06 57.4 35 74.3
Hund26118 Selenicereus undatus HOM05D002586 ORTHO05D007521 1.0e-06 57.4 42 59.5
TWI34G1303 Tripterygium wilfordii HOM05D002586 ORTHO05D007521 1.0e-06 57.4 35 71.4
Cc10_g11950 Coffea canephora HOM05D002586 ORTHO05D007521 1.3e-06 57.0 35 74.3
Peaxi162Scf00560g00619 Petunia axillaris HOM05D002586 ORTHO05D007521 1.3e-06 57.0 35 71.4
SalBow1G1951 Salvia bowleyana HOM05D002586 ORTHO05D007521 1.3e-06 57.0 35 74.3
THA.LOC104811104 Tarenaya hassleriana HOM05D002586 ORTHO05D007521 1.3e-06 57.0 35 74.3
HanXRQChr10g0317371 Helianthus annuus HOM05D002586 ORTHO05D007521 1.7e-06 56.6 42 57.1
Aa31LG10G11030 Aethionema arabicum HOM05D002586 ORTHO05D007521 2.3e-06 56.2 35 74.3
Eucgr.C01077 Eucalyptus grandis HOM05D002586 ORTHO05D007521 2.3e-06 56.2 47 57.4
Sabra18G0064400 Salix brachista HOM05D002586 ORTHO05D007521 2.3e-06 56.2 35 71.4
ECA234G2455 Erigeron canadensis HOM05D000417 ORTHO05D007521 3.0e-06 55.8 35 71.4
CAN.G444.6 Capsicum annuum HOM05D002586 ORTHO05D007521 3.9e-06 55.5 41 61.0
SGA_v2.0_scaffold1G00550 Striga asiatica HOM05D002586 ORTHO05D007521 3.9e-06 55.5 35 68.6
Haze_25681 Corylus avellana HOM05D002586 ORTHO05D007521 5.1e-06 55.1 42 59.5
PSO170G5904 Papaver somniferum HOM05D002586 ORTHO05D007521 5.1e-06 55.1 42 61.9
PSO210G4513 Papaver somniferum HOM05D002586 ORTHO05D007521 5.1e-06 55.1 42 61.9
Sc18g0001020 Simmondsia chinensis HOM05D002586 ORTHO05D007521 5.1e-06 55.1 42 57.1
arahy.Tifrunner.gnm1.ann1.7815EC Arachis hypogaea HOM05D002586 ORTHO05D007521 6.6e-06 54.7 41 61.0
DCAR_028731 Daucus carota HOM05D002250 ORTHO05D007521 8.7e-06 54.3 35 68.6
Nitab4.5_0000005g0480 Nicotiana tabacum HOM05D002586 ORTHO05D007521 8.7e-06 54.3 41 58.5
Nitab4.5_0000066g0020 Nicotiana tabacum HOM05D002586 ORTHO05D007521 8.7e-06 54.3 41 58.5


User provided reference genes

Program Settings