Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_20276 Sequoiadendron giganteum HOM05D003130 ORTHO05D003547 1.0e-82 310.1 158 100.0
SEGI_24696 Sequoiadendron giganteum HOM05D003130 ORTHO05D003547 1.0e-82 310.1 158 100.0
Solyc07g062270.3 Solanum lycopersicum HOM05D003130 ORTHO05D003547 5.4e-20 101.7 104 55.8
Lsat_1_v5_gn_9_100580 Lactuca sativa HOM05D003130 ORTHO05D003547 7.0e-20 101.3 82 59.8
Manes.15G096800 Manihot esculenta HOM05D003130 ORTHO05D003547 9.2e-20 100.9 94 56.4
Sopen07g030550 Solanum pennellii HOM05D003130 ORTHO05D003547 1.2e-19 100.5 103 52.4
Ciclev10020608m.g Citrus clementina HOM05D003130 ORTHO05D003547 2.0e-19 99.8 112 50.9
Ciclev10021719m.g Citrus clementina HOM05D003130 ORTHO05D003547 2.0e-19 99.8 112 50.9
PGR083G1989 Punica granatum HOM05D003130 ORTHO05D003547 2.7e-19 99.4 94 54.3
PGSC0003DMG400007066 Solanum tuberosum HOM05D003130 ORTHO05D003547 2.7e-19 99.4 74 64.9
CiPaw.11G157200 Carya illinoinensis HOM05D003130 ORTHO05D003547 7.8e-19 97.8 104 51.9
Lsat_1_v5_gn_7_102180 Lactuca sativa HOM05D003130 ORTHO05D003547 7.8e-19 97.8 77 62.3
unitig_0.g2277 Utricularia gibba HOM05D003130 ORTHO05D003547 7.8e-19 97.8 91 60.4
Haze_09254 Corylus avellana HOM05D003130 ORTHO05D003547 1.3e-18 97.1 104 51.0
Cc05_g10920 Coffea canephora HOM05D003130 ORTHO05D003547 1.7e-18 96.7 94 56.4
MBI07_g00462_MAGBIO Magnolia biondii HOM05D003130 ORTHO05D003547 1.7e-18 96.7 110 49.1
MSTRG.14241 Avicennia marina HOM05D003130 ORTHO05D003547 3.0e-18 95.9 114 50.9
TAR627G0271 Trochodendron aralioides HOM05D003130 ORTHO05D003547 3.0e-18 95.9 107 49.5
Lj1A826G63 Lonicera japonica HOM05D003130 ORTHO05D003547 3.9e-18 95.5 106 49.1
MD03G1244700 Malus domestica HOM05D003130 ORTHO05D003547 3.9e-18 95.5 92 56.5
Manes.03G099600 Manihot esculenta HOM05D003130 ORTHO05D003547 3.9e-18 95.5 94 57.4
Actinidia12592 Actinidia chinensis HOM05D003130 ORTHO05D003547 5.0e-18 95.1 97 52.6
Glyma.13G267851 Glycine max HOM05D003130 ORTHO05D003547 5.0e-18 95.1 64 68.8
Hma1.2p1_0050F.1_g029010 Hydrangea macrophylla HOM05D003130 ORTHO05D003547 5.0e-18 95.1 105 50.5
TAR629G1672 Trochodendron aralioides HOM05D003130 ORTHO05D003547 5.0e-18 95.1 111 49.5
DCAR_019604 Daucus carota HOM05D003130 ORTHO05D003547 6.6e-18 94.7 106 50.0
Migut.M00712 Erythranthe guttata HOM05D003130 ORTHO05D003547 6.6e-18 94.7 74 60.8
Hma1.2p1_1650F.1_g295670 Hydrangea macrophylla HOM05D003130 ORTHO05D003547 6.6e-18 94.7 108 50.0
Ciclev10020872m.g Citrus clementina HOM05D003130 ORTHO05D003547 8.6e-18 94.4 69 63.8
Nitab4.5_0000788g0020 Nicotiana tabacum HOM05D003130 ORTHO05D003547 8.6e-18 94.4 74 62.2
THA.LOC104813997 Tarenaya hassleriana HOM05D003130 ORTHO05D003547 8.6e-18 94.4 62 69.4
MD03G1244800 Malus domestica HOM05D003130 ORTHO05D003547 1.1e-17 94.0 112 50.0
Potri.003G026800 Populus trichocarpa HOM05D003130 ORTHO05D003547 1.1e-17 94.0 69 65.2
Prupe.4G159900 Prunus persica HOM05D003130 ORTHO05D003547 1.1e-17 94.0 92 56.5
Atru.chr2.2059 Acer truncatum HOM05D003130 ORTHO05D003547 1.5e-17 93.6 115 47.8
Aa31LG4G2310 Aethionema arabicum HOM05D003130 ORTHO05D003547 1.5e-17 93.6 62 69.4
CANSAT35G0714 Cannabis sativa HOM05D003130 ORTHO05D003547 1.5e-17 93.6 85 58.8
Dinv15006 Davidia involucrata HOM05D003130 ORTHO05D003547 1.5e-17 93.6 76 64.5
Potri.001G387100 Populus trichocarpa HOM05D003130 ORTHO05D003547 1.5e-17 93.6 69 63.8
Nitab4.5_0006663g0030 Nicotiana tabacum HOM05D003130 ORTHO05D003547 1.9e-17 93.2 101 43.6
Oeu036486.2 Olea europaea HOM05D003130 ORTHO05D003547 1.9e-17 93.2 113 48.7
Peaxi162Scf01132g00139 Petunia axillaris HOM05D003130 ORTHO05D003547 1.9e-17 93.2 116 47.4
SpUn0074_0050 Schrenkiella parvula HOM05D003130 ORTHO05D003547 1.9e-17 93.2 62 69.4
Solyc07g062280.3 Solanum lycopersicum HOM05D003130 ORTHO05D003547 1.9e-17 93.2 101 46.5
Sopen07g030560 Solanum pennellii HOM05D003130 ORTHO05D003547 1.9e-17 93.2 101 46.5
Rhsim06G0210400 Rhododendron simsii HOM05D003130 ORTHO05D003547 2.5e-17 92.8 94 48.9
Sc15g0000080 Simmondsia chinensis HOM05D003130 ORTHO05D003547 2.5e-17 92.8 85 56.5
CSS0012460 Camellia sinensis var. sinensis HOM05D003130 ORTHO05D003547 3.3e-17 92.4 112 49.1
Thhalv10018776m.g Eutrema salsugineum HOM05D003130 ORTHO05D003547 3.3e-17 92.4 62 67.7
Medtr2g075770 Medicago truncatula HOM05D003130 ORTHO05D003547 3.3e-17 92.4 93 55.9
Nitab4.5_0000383g0060 Nicotiana tabacum HOM05D003130 ORTHO05D003547 3.3e-17 92.4 105 51.4
AL262U10016 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 4.3e-17 92.0 62 71.0
AL2G39084 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 4.3e-17 92.0 62 71.0
Peaxi162Scf00692g00317 Petunia axillaris HOM05D003130 ORTHO05D003547 4.3e-17 92.0 69 62.3
TWI39G0119 Tripterygium wilfordii HOM05D003130 ORTHO05D003547 4.3e-17 92.0 69 65.2
AT1G78680 Arabidopsis thaliana HOM05D003130 ORTHO05D003547 5.6e-17 91.7 62 71.0
Potri.011G107600 Populus trichocarpa HOM05D003130 ORTHO05D003547 5.6e-17 91.7 62 69.4
PGSC0003DMG400035974 Solanum tuberosum HOM05D003130 ORTHO05D003547 5.6e-17 91.7 76 53.9
C06p52560 Brassica napus HOM05D003130 ORTHO05D003547 7.3e-17 91.3 67 65.7
BolC6t40275H Brassica oleracea HOM05D003130 ORTHO05D007530 7.3e-17 91.3 67 65.7
MELO3C025645.2 Cucumis melo HOM05D003130 ORTHO05D003547 7.3e-17 91.3 62 67.7
HanXRQChr15g0495171 Helianthus annuus HOM05D003130 ORTHO05D003547 7.3e-17 91.3 96 53.1
Nn3g21072 Nelumbo nucifera HOM05D003130 ORTHO05D003547 7.3e-17 91.3 107 48.6
Nitab4.5_0000347g0200 Nicotiana tabacum HOM05D003130 ORTHO05D003547 7.3e-17 91.3 72 65.3
Sabra11G0095400 Salix brachista HOM05D003130 ORTHO05D003547 7.3e-17 91.3 56 76.8
Sabra16G0254600 Salix brachista HOM05D003130 ORTHO05D003547 7.3e-17 91.3 56 76.8
Solyc10g007410.4 Solanum lycopersicum HOM05D003130 ORTHO05D003547 7.3e-17 91.3 62 66.1
Sopen10g003240 Solanum pennellii HOM05D003130 ORTHO05D003547 7.3e-17 91.3 62 66.1
PGSC0003DMG400021256 Solanum tuberosum HOM05D003130 ORTHO05D003547 7.3e-17 91.3 62 66.1
CAN.G904.33 Capsicum annuum HOM05D003130 ORTHO05D003547 9.5e-17 90.9 62 64.5
Eucgr.F01299 Eucalyptus grandis HOM05D003130 ORTHO05D003547 9.5e-17 90.9 92 53.3
Nitab4.5_0022404g0010 Nicotiana tabacum HOM05D003130 ORTHO05D003547 9.5e-17 90.9 95 46.3
BcaB03g16026 Brassica carinata HOM05D003130 ORTHO05D003547 1.2e-16 90.5 67 64.2
CARHR072210 Cardamine hirsuta HOM05D003130 ORTHO05D003547 1.2e-16 90.5 62 66.1
MD00G1184200 Malus domestica HOM05D003130 ORTHO05D003547 1.2e-16 90.5 112 50.0
RcHm_v2.0_Chr5g0030171 Rosa chinensis HOM05D003130 ORTHO05D003547 1.2e-16 90.5 62 67.7
RcHm_v2.0_Chr5g0030431 Rosa chinensis HOM05D003130 ORTHO05D003547 1.2e-16 90.5 62 67.7
RcHm_v2.0_Chr5g0030511 Rosa chinensis HOM05D003130 ORTHO05D003547 1.2e-16 90.5 62 67.7
Carub.0002s2554 Capsella rubella HOM05D003130 ORTHO05D003547 1.6e-16 90.1 62 66.1
Phvul.005G080600 Phaseolus vulgaris HOM05D003130 ORTHO05D003547 1.6e-16 90.1 86 52.3
COL.COLO4_17512 Corchorus olitorius HOM05D003130 ORTHO05D003547 2.1e-16 89.7 61 68.9
Glyma.13G268000 Glycine max HOM05D003130 ORTHO05D003547 2.1e-16 89.7 73 61.6
Lj1g0011966 Lotus japonicus HOM05D003130 ORTHO05D003547 2.1e-16 89.7 73 61.6
Phvul.005G080700 Phaseolus vulgaris HOM05D003130 ORTHO05D003547 2.1e-16 89.7 69 65.2
QL08p022953 Quercus lobata HOM05D003130 ORTHO05D003547 2.1e-16 89.7 107 50.5
SGA_v2.0_scaffold47G17804 Striga asiatica HOM05D003130 ORTHO05D003547 2.1e-16 89.7 77 57.1
TPR.G16064 Trifolium pratense HOM05D003130 ORTHO05D003547 2.1e-16 89.7 102 48.0
vmacro11956 Vaccinium macrocarpon HOM05D003130 ORTHO05D003547 2.1e-16 89.7 112 44.6
A07p43930 Brassica napus HOM05D003130 ORTHO05D003547 2.8e-16 89.4 67 62.7
BraA07t31900Z Brassica rapa HOM05D003130 ORTHO05D003547 2.8e-16 89.4 67 62.7
Gohir.D01G041000 Gossypium hirsutum HOM05D003130 ORTHO05D003547 2.8e-16 89.4 61 68.9
Gorai.002G051200 Gossypium raimondii HOM05D003130 ORTHO05D003547 2.8e-16 89.4 61 68.9
VMungo1080G1321 Vigna mungo HOM05D003130 ORTHO05D003547 2.8e-16 89.4 73 63.0
CsaV3_4G033040 Cucumis sativus L. HOM05D003130 ORTHO05D003547 3.6e-16 89.0 62 66.1
Gohir.A01G051200 Gossypium hirsutum HOM05D003130 ORTHO05D003547 3.6e-16 89.0 61 67.2
Peaxi162Scf00111g01453 Petunia axillaris HOM05D003130 ORTHO05D003547 3.6e-16 89.0 67 58.2
CsaV3_4G033060 Cucumis sativus L. HOM05D003130 ORTHO05D003547 4.7e-16 88.6 59 67.8
AL2G39070 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 6.2e-16 88.2 98 51.0
AT1G78660 Arabidopsis thaliana HOM05D003130 ORTHO05D003547 6.2e-16 88.2 62 64.5
CARHR072190 Cardamine hirsuta HOM05D003130 ORTHO05D003547 6.2e-16 88.2 62 64.5
Ciclev10024365m.g Citrus clementina HOM05D003130 ORTHO05D003547 6.2e-16 88.2 102 52.9
FvH4_3g18102 Fragaria vesca HOM05D003130 ORTHO05D003547 6.2e-16 88.2 113 46.0
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 6.2e-16 88.2 113 46.0
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 6.2e-16 88.2 113 46.0
Medtr2g075760 Medicago truncatula HOM05D003130 ORTHO05D003547 6.2e-16 88.2 73 61.6
Medtr2g075780 Medicago truncatula HOM05D003130 ORTHO05D003547 6.2e-16 88.2 103 52.4
SGA_v2.0_scaffold130G34280 Striga asiatica HOM05D003130 ORTHO05D003547 6.2e-16 88.2 62 66.1
Thecc.07G126300 Theobroma cacao HOM05D003130 ORTHO05D003547 6.2e-16 88.2 61 67.2
Carub.0002s2551 Capsella rubella HOM05D003130 ORTHO05D003547 8.1e-16 87.8 62 64.5
SalBow7G3364 Salvia bowleyana HOM05D003130 ORTHO05D003547 8.1e-16 87.8 58 72.4
Sp5g33740 Schrenkiella parvula HOM05D003130 ORTHO05D003547 8.1e-16 87.8 62 64.5
SpUn0074_0020 Schrenkiella parvula HOM05D003130 ORTHO05D003547 8.1e-16 87.8 62 64.5
Cpa.g.sc77.51 Carica papaya HOM05D003130 ORTHO05D003547 1.1e-15 87.4 96 51.0
GSVIVG01014167001 Vitis vinifera HOM05D003130 ORTHO05D003547 1.1e-15 87.4 103 47.6
ATR0127G004 Amborella trichopoda HOM05D003130 ORTHO05D003547 1.4e-15 87.0 106 45.3
ClCG11G017400 Citrullus lanatus HOM05D003130 ORTHO05D003547 1.4e-15 87.0 62 64.5
CsaV3_4G033050 Cucumis sativus L. HOM05D003130 ORTHO05D003547 1.4e-15 87.0 127 41.7
Duzib213G0586 Durio zibethinus HOM05D003130 ORTHO05D003547 1.4e-15 87.0 61 65.6
PSO423G0175 Papaver somniferum HOM05D003130 ORTHO05D003547 1.8e-15 86.7 61 65.6
PSO782G2947 Papaver somniferum HOM05D003130 ORTHO05D003547 1.8e-15 86.7 67 61.2
Potri.012G110400 Populus trichocarpa HOM05D003130 ORTHO05D003547 1.8e-15 86.7 62 66.1
EL10Ac4g08383 Beta vulgaris HOM05D003130 ORTHO05D003547 2.3e-15 86.3 76 56.6
ECA236G4062 Erigeron canadensis HOM05D003130 ORTHO05D003547 2.3e-15 86.3 51 78.4
ECA240G1349 Erigeron canadensis HOM05D003130 ORTHO05D003547 2.3e-15 86.3 62 66.1
Lj3g0027506 Lotus japonicus HOM05D003130 ORTHO05D003547 2.3e-15 86.3 73 60.3
Thhalv10018738m.g Eutrema salsugineum HOM05D003130 ORTHO05D003547 3.1e-15 85.9 62 62.9
PSO170G0675 Papaver somniferum HOM05D003130 ORTHO05D003547 3.1e-15 85.9 114 42.1
Gohir.A01G051400 Gossypium hirsutum HOM05D003130 ORTHO05D003547 4.0e-15 85.5 61 65.6
SpUn0074_0040 Schrenkiella parvula HOM05D003130 ORTHO05D003547 4.0e-15 85.5 96 53.1
BcaB05g25151 Brassica carinata HOM05D003130 ORTHO05D003547 5.2e-15 85.1 62 62.9
A02p22320 Brassica napus HOM05D003130 ORTHO05D003547 5.2e-15 85.1 62 61.3
BraA02t07236Z Brassica rapa HOM05D003130 ORTHO05D003547 5.2e-15 85.1 62 61.3
Ca_03949_v3 Cicer arietinum L. HOM05D003130 ORTHO05D003547 5.2e-15 85.1 111 45.0
Aqoxy4G00223 Aquilegia oxysepala HOM05D003130 ORTHO05D003547 8.9e-15 84.3 100 46.0
C02p35860 Brassica napus HOM05D003130 ORTHO05D003547 8.9e-15 84.3 62 61.3
PSO079G0057 Papaver somniferum HOM05D003130 ORTHO05D003547 1.2e-14 84.0 61 62.3
Sed0012404 Sechium edule HOM05D003130 ORTHO05D003547 1.2e-14 84.0 111 45.0
SGA_v2.0_scaffold73G24394 Striga asiatica HOM05D003130 ORTHO05D003547 1.2e-14 84.0 59 64.4
BcaC03g15835 Brassica carinata HOM05D003130 ORTHO05D003547 2.0e-14 83.2 62 61.3
BolC2t09599H Brassica oleracea HOM05D003130 ORTHO05D003547 2.0e-14 83.2 62 61.3
HPP92_006383 Vanilla planifolia HOM05D003130 ORTHO05D003547 2.0e-14 83.2 69 59.4
AUR62037582 Chenopodium quinoa HOM05D003130 ORTHO05D003547 2.6e-14 82.8 61 60.7
AUR62019606 Chenopodium quinoa HOM05D003130 ORTHO05D003547 4.4e-14 82.0 61 60.7
FAN21G2254 Fragaria x ananassa HOM05D003130 ORTHO05D003547 4.4e-14 82.0 113 44.2
Lalb_Chr20g0109171 Lupinus albus HOM05D003130 ORTHO05D003547 4.4e-14 82.0 62 62.9
Ca_03950_v3 Cicer arietinum L. HOM05D003130 ORTHO05D003547 5.8e-14 81.6 86 47.7
Os05g0517500 Oryza sativa ssp. japonica HOM05D003130 ORTHO05D003547 5.8e-14 81.6 80 56.2
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 7.5e-14 81.3 69 50.7
Aqoxy4G00220 Aquilegia oxysepala HOM05D003130 ORTHO05D003547 7.5e-14 81.3 100 46.0
Migut.H02009 Erythranthe guttata HOM05D003130 ORTHO05D003547 9.8e-14 80.9 72 50.0
VMungo1080G1395 Vigna mungo HOM05D003130 ORTHO05D003547 1.3e-13 80.5 75 56.0
Migut.H02016 Erythranthe guttata HOM05D003130 ORTHO05D003547 2.2e-13 79.7 81 49.4
Migut.H02010 Erythranthe guttata HOM05D003130 ORTHO05D003547 2.9e-13 79.3 61 59.0
Lalb_Chr25g0285721 Lupinus albus HOM05D003130 ORTHO05D003547 3.7e-13 79.0 62 59.7
AT1G78670 Arabidopsis thaliana HOM05D003130 ORTHO05D003547 1.1e-12 77.4 69 56.5
AL262U10014 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 1.9e-12 76.6 68 58.8
AL2G39082 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 1.9e-12 76.6 68 58.8
Carub.0002s2553 Capsella rubella HOM05D003130 ORTHO05D003547 4.1e-12 75.5 110 43.6
Zm00001eb353180 Zea mays HOM05D003130 ORTHO05D003547 4.1e-12 75.5 60 56.7
Medtr2g075790 Medicago truncatula HOM05D003130 ORTHO05D003547 5.4e-12 75.1 122 40.2
Psat5g236280 Pisum sativum HOM05D003130 ORTHO05D003547 7.1e-12 74.7 69 55.1
Nn6g34459 Nelumbo nucifera HOM05D003130 ORTHO05D003547 4.6e-11 72.0 113 43.4
SMO165G0138 Selaginella moellendorffii HOM05D003130 ORTHO05D003547 1.7e-10 70.1 90 45.6
Pp3c26_1140 Physcomitrium patens HOM05D003130 ORTHO05D003547 5.1e-10 68.6 79 50.6
BraA07t31898Z Brassica rapa HOM05D003130 ORTHO05D003547 6.6e-10 68.2 114 43.0
SalBow7G2473 Salvia bowleyana HOM05D003130 ORTHO05D003547 1.5e-09 67.0 66 56.1
arahy.Tifrunner.gnm1.ann1.F86IGW Arachis hypogaea HOM05D003130 ORTHO05D003547 1.9e-09 66.6 55 58.2
Gorai.002G051600 Gossypium raimondii HOM05D003130 ORTHO05D003547 5.6e-09 65.1 57 61.4
A07p43920 Brassica napus HOM05D003130 ORTHO05D003547 9.5e-09 64.3 114 41.2
Actinidia07512 Actinidia chinensis HOM05D003130 ORTHO05D003547 2.1e-08 63.2 58 53.4
Pp3c17_12060 Physcomitrium patens HOM05D003130 ORTHO05D003547 2.1e-08 63.2 75 50.7
Thecc.07G126100 Theobroma cacao HOM05D003130 ORTHO05D003547 2.1e-08 63.2 65 49.2
CBR_g19230 Chara braunii HOM05D000019 ORTHO05D000002 4.7e-08 62.0 59 59.3
Cre06.g275050 Chlamydomonas reinhardtii HOM05D003130 ORTHO05D003547 2.3e-07 59.7 65 49.2
AagrBONN_evm.TU.Sc2ySwM_117.1069 Anthoceros agrestis HOM05D003130 ORTHO05D003547 3.4e-06 55.8 103 39.8
MELO3C032479.2 Cucumis melo HOM05D003130 ORTHO05D003547 9.9e-06 54.3 43 60.5


User provided reference genes

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