Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 2.9e-174 615.1 316 100.0
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 6.6e-86 321.6 279 57.3
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 6.6e-86 321.6 309 57.0
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 2.1e-84 316.6 291 57.4
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 2.0e-82 310.1 317 54.9
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 3.4e-82 309.3 291 55.3
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 4.4e-82 308.9 313 53.0
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 3.8e-81 305.8 293 54.6
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 1.1e-80 304.3 286 53.5
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 1.1e-80 304.3 286 53.5
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 1.4e-80 303.9 322 53.1
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.9e-80 303.5 288 54.2
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 2.4e-80 303.1 289 54.0
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 2.4e-80 303.1 290 54.1
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 2.4e-80 303.1 290 55.2
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 7.1e-80 301.6 294 55.1
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 7.1e-80 301.6 319 54.2
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 7.1e-80 301.6 286 53.1
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 2.1e-79 300.1 316 52.2
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.1e-79 300.1 319 53.9
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.1e-79 300.1 317 54.3
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.1e-79 300.1 317 54.3
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 6.0e-79 298.5 308 51.9
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 6.0e-79 298.5 316 51.6
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 7.8e-79 298.1 319 53.6
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 1.3e-78 297.4 291 53.3
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 2.3e-78 296.6 291 54.3
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 3.0e-78 296.2 290 53.8
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 5.1e-78 295.4 316 51.3
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 5.1e-78 295.4 317 50.8
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 8.7e-78 294.7 288 52.1
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 8.7e-78 294.7 313 51.1
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 1.1e-77 294.3 318 52.2
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 1.5e-77 293.9 307 51.8
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 4.3e-77 292.4 288 52.1
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 5.6e-77 292.0 313 51.1
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 5.6e-77 292.0 311 52.4
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 9.6e-77 291.2 221 63.3
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 2.8e-76 289.7 310 49.4
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 2.8e-76 289.7 317 49.8
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 3.6e-76 289.3 261 55.6
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 8.1e-76 288.1 323 50.5
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 1.1e-75 287.7 310 49.0
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 1.4e-75 287.3 317 49.2
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 2.4e-75 286.6 308 51.3
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 5.3e-75 285.4 288 50.3
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 9.0e-75 284.6 320 50.0
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 2.6e-74 283.1 322 45.7
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 2.6e-74 283.1 319 47.6
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 3.4e-74 282.7 288 52.8
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 3.4e-74 282.7 316 49.7
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 5.8e-74 282.0 310 47.4
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 5.8e-74 282.0 310 47.4
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 7.6e-74 281.6 290 52.8
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 7.6e-74 281.6 316 49.4
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 7.6e-74 281.6 313 48.2
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 9.9e-74 281.2 309 50.8
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 1.3e-73 280.8 319 49.5
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 1.7e-73 280.4 314 49.4
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 2.2e-73 280.0 314 49.4
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 2.2e-73 280.0 296 52.0
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 2.2e-73 280.0 296 52.0
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 2.2e-73 280.0 308 49.0
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 2.2e-73 280.0 308 50.0
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 2.9e-73 279.6 314 49.7
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 2.9e-73 279.6 315 48.9
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 3.8e-73 279.3 255 55.3
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 4.9e-73 278.9 330 47.3
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 8.4e-73 278.1 287 52.3
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 1.1e-72 277.7 314 49.4
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 2.4e-72 276.6 315 48.9
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 4.2e-72 275.8 288 50.3
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 7.1e-72 275.0 317 46.7
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 1.2e-71 274.2 281 50.2
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 2.1e-71 273.5 316 48.4
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 3.5e-71 272.7 203 64.0
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 6.0e-71 271.9 319 45.1
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 7.9e-71 271.6 324 48.8
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 1.8e-70 270.4 314 46.8
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 2.3e-70 270.0 315 46.0
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 5.1e-70 268.9 320 50.3
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 1.9e-69 266.9 291 50.5
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 3.3e-69 266.2 319 46.7
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 7.4e-69 265.0 312 47.1
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 7.4e-69 265.0 289 49.5
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 7.4e-69 265.0 312 45.8
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 9.6e-69 264.6 310 48.1
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 1.3e-68 264.2 330 48.8
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 1.3e-68 264.2 291 49.1
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 1.6e-68 263.8 320 47.8
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 2.1e-68 263.5 291 49.8
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 2.4e-67 260.0 289 49.1
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 4.0e-67 259.2 292 49.7
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 5.3e-67 258.8 293 48.1
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 5.3e-67 258.8 212 58.0
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 6.9e-67 258.5 314 46.2
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 6.9e-67 258.5 307 46.9
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 1.2e-66 257.7 271 49.4
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 3.4e-66 256.1 315 45.7
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 5.8e-66 255.4 317 46.7
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 1.3e-65 254.2 294 48.0
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 2.2e-65 253.4 324 44.8
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 1.9e-64 250.4 316 45.9
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 1.9e-64 250.4 319 48.0
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 3.2e-64 249.6 288 47.6
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 2.7e-63 246.5 312 45.2
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 2.7e-63 246.5 287 47.0
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 3.5e-63 246.1 291 47.8
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 1.8e-62 243.8 320 43.8
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 3.0e-62 243.0 288 45.1
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 8.7e-62 241.5 294 46.3
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 1.5e-61 240.7 271 47.6
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 2.8e-60 236.5 318 41.8
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 6.2e-60 235.3 211 57.3
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 1.8e-59 233.8 316 41.1
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 1.8e-59 233.8 320 43.1
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 9.0e-59 231.5 313 45.0
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 1.2e-58 231.1 318 43.4
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 1.5e-58 230.7 380 39.2
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 8.4e-57 224.9 197 56.3
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 3.2e-56 223.0 308 43.2
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 4.6e-55 219.2 239 51.5
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 1.8e-54 217.2 198 53.5
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 5.9e-50 202.2 260 42.7
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 9.4e-48 194.9 236 44.9
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 3.9e-46 189.5 162 56.2
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 5.0e-33 146.0 101 60.4
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 1.0e-30 138.3 100 62.0
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 1.1e-29 134.8 206 35.0
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 2.6e-29 133.7 212 40.1
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 4.1e-27 126.3 204 34.3
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 1.9e-24 117.5 117 49.6
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 4.2e-24 116.3 231 32.9
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 9.8e-21 105.1 68 66.2
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.8e-20 103.6 66 68.2
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 2.0e-18 97.4 295 28.1
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 9.4e-16 88.6 143 41.3
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 9.4e-16 88.6 143 41.3
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 3.0e-14 83.6 63 57.1
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 8.8e-14 82.0 68 55.9
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 5.7e-13 79.3 76 43.4
TAR636G2165 Trochodendron aralioides HOM05D004932 ORTHO05D005622 2.8e-12 77.0 62 59.7
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 7.0e-11 72.4 45 71.1
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 3.5e-10 70.1 73 50.7
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 1.1e-08 65.1 119 38.7
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 9.5e-08 62.0 49 51.0
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 2.3e-06 57.4 39 64.1
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 4.0e-06 56.6 44 52.3


User provided reference genes

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