Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_24355 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 1.0e-32 142.9 77 100.0
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 1.6e-14 82.4 55 78.2
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 2.2e-14 82.0 55 76.4
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 2.8e-14 81.6 55 78.2
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 8.2e-14 80.1 56 73.2
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 1.1e-13 79.7 55 74.5
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 1.4e-13 79.3 55 72.7
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 1.8e-13 79.0 54 74.1
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.8e-13 79.0 55 72.7
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 1.8e-13 79.0 55 74.5
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 2.4e-13 78.6 55 72.7
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 4.1e-13 77.8 55 72.7
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 4.1e-13 77.8 56 71.4
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 5.3e-13 77.4 55 70.9
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 5.3e-13 77.4 55 72.7
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 5.3e-13 77.4 57 70.2
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 5.3e-13 77.4 55 72.7
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 6.9e-13 77.0 55 69.1
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 6.9e-13 77.0 57 70.2
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 6.9e-13 77.0 55 70.9
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 6.9e-13 77.0 57 66.7
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 6.9e-13 77.0 55 70.9
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 9.1e-13 76.6 55 70.9
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 9.1e-13 76.6 55 70.9
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 9.1e-13 76.6 55 70.9
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 9.1e-13 76.6 55 72.7
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 1.2e-12 76.3 57 70.2
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 1.2e-12 76.3 57 70.2
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 1.2e-12 76.3 55 70.9
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 1.2e-12 76.3 55 70.9
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 1.2e-12 76.3 55 69.1
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 1.2e-12 76.3 55 70.9
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.2e-12 76.3 55 70.9
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 1.2e-12 76.3 55 70.9
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 1.2e-12 76.3 55 70.9
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 1.2e-12 76.3 61 65.6
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 1.5e-12 75.9 57 70.2
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 1.5e-12 75.9 57 66.7
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 1.5e-12 75.9 57 66.7
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 1.5e-12 75.9 57 66.7
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 2.0e-12 75.5 55 70.9
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 2.0e-12 75.5 54 70.4
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 2.0e-12 75.5 55 69.1
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 2.6e-12 75.1 55 70.9
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 3.4e-12 74.7 55 69.1
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 3.4e-12 74.7 56 66.1
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 4.5e-12 74.3 57 70.2
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 4.5e-12 74.3 56 67.9
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.5e-12 74.3 55 67.3
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 4.5e-12 74.3 55 70.9
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 4.5e-12 74.3 55 67.3
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 4.5e-12 74.3 55 67.3
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 4.5e-12 74.3 55 67.3
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 4.5e-12 74.3 57 66.7
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 4.5e-12 74.3 55 69.1
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 4.5e-12 74.3 54 70.4
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 5.9e-12 73.9 57 70.2
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 5.9e-12 73.9 55 65.5
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 5.9e-12 73.9 55 70.9
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 5.9e-12 73.9 55 67.3
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 5.9e-12 73.9 55 67.3
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 7.7e-12 73.6 55 67.3
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 7.7e-12 73.6 55 67.3
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 7.7e-12 73.6 55 67.3
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 7.7e-12 73.6 57 64.9
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 7.7e-12 73.6 55 65.5
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 7.7e-12 73.6 55 67.3
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 7.7e-12 73.6 55 69.1
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 7.7e-12 73.6 55 67.3
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 1.0e-11 73.2 55 65.5
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 1.0e-11 73.2 54 70.4
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 1.0e-11 73.2 56 67.9
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 1.0e-11 73.2 56 66.1
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 1.0e-11 73.2 60 65.0
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 1.0e-11 73.2 55 67.3
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 1.0e-11 73.2 55 69.1
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 1.3e-11 72.8 55 67.3
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 1.3e-11 72.8 55 70.9
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 1.3e-11 72.8 55 63.6
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 1.3e-11 72.8 57 64.9
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 1.3e-11 72.8 55 69.1
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 1.3e-11 72.8 56 69.6
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 1.7e-11 72.4 54 68.5
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 1.7e-11 72.4 56 64.3
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 1.7e-11 72.4 56 66.1
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 2.2e-11 72.0 57 70.2
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 2.2e-11 72.0 55 69.1
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 2.2e-11 72.0 55 69.1
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 2.2e-11 72.0 61 60.7
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 2.2e-11 72.0 55 69.1
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 2.2e-11 72.0 55 69.1
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 2.2e-11 72.0 55 65.5
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 2.9e-11 71.6 55 65.5
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 3.8e-11 71.2 55 67.3
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 3.8e-11 71.2 55 65.5
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 3.8e-11 71.2 56 64.3
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 5.0e-11 70.9 55 67.3
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 5.0e-11 70.9 54 64.8
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 5.0e-11 70.9 56 62.5
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 5.0e-11 70.9 54 66.7
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 5.0e-11 70.9 65 55.4
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 6.5e-11 70.5 54 66.7
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 6.5e-11 70.5 56 62.5
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 6.5e-11 70.5 56 62.5
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 6.5e-11 70.5 56 64.3
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 8.5e-11 70.1 55 63.6
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 8.5e-11 70.1 53 67.9
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 8.5e-11 70.1 55 60.0
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 1.1e-10 69.7 54 64.8
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 1.1e-10 69.7 55 67.3
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 1.1e-10 69.7 55 63.6
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 1.1e-10 69.7 59 61.0
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 1.1e-10 69.7 57 59.6
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 1.4e-10 69.3 55 65.5
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 1.4e-10 69.3 56 60.7
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 2.5e-10 68.6 55 61.8
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 3.2e-10 68.2 55 61.8
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 7.2e-10 67.0 54 68.5
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 1.2e-09 66.2 56 62.5
Mapoly0001s0190 Marchantia polymorpha HOM05D004812 ORTHO05D005721 6.1e-09 63.9 51 62.7
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 6.1e-09 63.9 57 56.1
AagrBONN_evm.TU.Sc2ySwM_228.2797 Anthoceros agrestis HOM05D004812 ORTHO05D005721 7.9e-09 63.5 51 66.7
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 1.8e-08 62.4 51 62.7
Pp3c17_7620 Physcomitrium patens HOM05D004812 ORTHO05D005721 1.8e-08 62.4 56 57.1
Actinidia19589 Actinidia chinensis HOM05D004812 ORTHO05D005721 2.3e-08 62.0 66 47.0
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 2.0e-07 58.9 42 73.8
SMO351G0516 Selaginella moellendorffii HOM05D004812 ORTHO05D005721 2.8e-06 55.1 52 53.8
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 4.8e-06 54.3 54 53.7


User provided reference genes

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