Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 1.9e-186 655.6 317 100.0
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 4.3e-101 372.1 281 63.7
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 4.7e-100 368.6 283 63.3
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.1e-99 367.5 283 62.9
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 1.4e-99 367.1 280 63.6
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 1.8e-99 366.7 280 62.5
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 4.0e-99 365.5 286 61.2
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 6.9e-99 364.8 282 62.1
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 8.9e-99 364.4 281 62.6
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 1.5e-98 363.6 283 62.5
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 2.6e-98 362.8 280 61.4
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 3.4e-98 362.5 277 63.5
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 3.4e-98 362.5 283 62.2
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 4.4e-98 362.1 284 60.9
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 1.7e-97 360.1 284 61.3
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 1.7e-97 360.1 280 61.8
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 2.2e-97 359.8 280 61.1
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 4.9e-97 358.6 289 59.2
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 4.9e-97 358.6 277 61.7
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 6.4e-97 358.2 284 61.3
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 6.4e-97 358.2 283 60.8
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 8.4e-97 357.8 280 60.4
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 1.1e-96 357.5 300 56.7
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 1.1e-96 357.5 283 61.1
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 3.2e-96 355.9 281 59.4
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 5.4e-96 355.1 285 61.1
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 7.1e-96 354.8 278 62.2
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 7.1e-96 354.8 284 59.5
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 1.6e-95 353.6 280 60.7
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 1.6e-95 353.6 280 61.1
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 1.6e-95 353.6 281 58.4
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 1.6e-95 353.6 282 62.4
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 2.1e-95 353.2 285 59.3
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 2.7e-95 352.8 277 61.7
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 2.7e-95 352.8 283 61.5
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 7.8e-95 351.3 287 58.5
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 1.0e-94 350.9 283 61.5
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 1.0e-94 350.9 283 61.5
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 1.3e-94 350.5 284 59.9
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 1.7e-94 350.1 283 60.1
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 8.7e-94 347.8 286 60.5
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 1.5e-93 347.1 281 60.1
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 4.3e-93 345.5 283 60.1
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 4.3e-93 345.5 263 62.0
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 5.6e-93 345.1 283 59.4
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 5.6e-93 345.1 283 60.1
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 7.3e-93 344.7 283 59.4
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 9.6e-93 344.4 283 60.1
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 9.6e-93 344.4 284 59.9
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 9.6e-93 344.4 284 59.9
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 1.3e-92 344.0 283 59.4
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 1.6e-92 343.6 284 58.8
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 2.1e-92 343.2 283 60.4
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 2.1e-92 343.2 263 62.7
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 2.8e-92 342.8 283 60.4
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 3.6e-92 342.4 279 58.8
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 4.8e-92 342.0 283 59.4
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 4.8e-92 342.0 282 59.6
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 1.1e-91 340.9 282 59.2
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 1.8e-91 340.1 279 60.2
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 3.1e-91 339.3 262 63.0
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 5.3e-91 338.6 280 58.9
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 6.9e-91 338.2 283 59.0
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 6.9e-91 338.2 283 59.7
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 6.9e-91 338.2 283 59.7
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 6.9e-91 338.2 283 59.7
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 9.0e-91 337.8 285 58.9
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 9.0e-91 337.8 285 58.9
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 5.8e-90 335.1 284 58.8
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 5.8e-90 335.1 284 58.8
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 1.3e-89 334.0 236 65.3
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 1.7e-89 333.6 276 57.2
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 1.7e-89 333.6 320 52.5
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 1.7e-89 333.6 279 59.5
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 2.2e-89 333.2 279 59.5
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 2.9e-89 332.8 326 53.1
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 6.4e-89 331.6 258 60.1
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 6.4e-89 331.6 235 64.7
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 1.9e-88 330.1 282 56.0
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 1.9e-88 330.1 259 59.5
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 2.7e-87 326.2 271 60.5
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 6.0e-87 325.1 257 61.5
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 3.9e-86 322.4 313 52.1
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 6.7e-86 321.6 308 52.9
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 8.7e-86 321.2 280 56.4
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 1.5e-85 320.5 356 48.3
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 8.1e-84 314.7 280 56.8
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 8.1e-84 314.7 395 44.3
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 4.0e-83 312.4 281 55.9
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 7.6e-82 308.1 238 63.0
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 8.4e-81 304.7 325 50.8
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 5.5e-80 302.0 388 44.1
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 1.8e-78 297.0 280 55.7
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 1.1e-77 294.3 279 54.1
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 2.5e-77 293.1 271 54.6
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 9.6e-77 291.2 284 53.9
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 1.3e-76 290.8 239 58.2
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 2.8e-76 289.7 280 53.6
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.8e-75 287.0 282 53.5
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 8.4e-73 278.1 268 53.4
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 5.1e-70 268.9 307 48.5
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 8.7e-70 268.1 202 62.9
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 5.7e-69 265.4 189 65.1
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 3.7e-68 262.7 256 51.6
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 1.2e-66 257.7 227 56.8
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 3.9e-62 242.7 265 49.1
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 3.9e-62 242.7 187 60.4
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 1.9e-61 240.4 189 61.9
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 2.2e-60 236.9 186 61.3
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 1.2e-58 231.1 327 39.8
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 2.9e-57 226.5 202 58.9
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 1.9e-56 223.8 252 44.8
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 3.1e-51 206.5 145 64.8
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 2.7e-39 166.8 194 46.4
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 4.0e-30 136.3 98 60.2
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 7.5e-29 132.1 111 55.9
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 7.5e-29 132.1 111 55.9
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 5.5e-24 115.9 81 61.7
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 2.1e-23 114.0 98 57.1
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 1.5e-21 107.8 61 73.8
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 3.7e-20 103.2 104 49.0
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 1.4e-19 101.3 90 55.6
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 1.4e-19 101.3 93 54.8
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 5.4e-19 99.4 90 55.6
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 9.2e-19 98.6 51 82.4
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 1.3e-17 94.7 95 53.7
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 1.5e-16 91.3 53 67.9
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 5.6e-16 89.4 79 55.7
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 5.6e-16 89.4 95 52.6
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 8.0e-15 85.5 91 51.6
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 2.3e-14 84.0 66 60.6
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 2.6e-13 80.5 75 60.0
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 7.5e-13 79.0 72 52.8
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 7.5e-13 79.0 83 48.2
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 2.0e-10 70.9 37 75.7
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 2.3e-09 67.4 35 74.3
Nitab4.5_0000637g0040 Nicotiana tabacum HOM05D005284 ORTHO05D006609 3.0e-09 67.0 57 54.4
Nitab4.5_0001154g0100 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.5e-08 64.7 46 63.0
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 1.1e-06 58.5 33 63.6
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 1.1e-06 58.5 33 63.6


User provided reference genes

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