Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_24150 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 1.4e-41 172.6 89 100.0
SEGI_36861 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 7.7e-40 166.8 89 96.6
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 5.9e-16 87.4 85 49.4
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 1.3e-15 86.3 88 42.0
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 1.7e-15 85.9 88 44.3
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 1.7e-15 85.9 84 46.4
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 2.3e-15 85.5 85 44.7
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 2.3e-15 85.5 88 44.3
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 2.9e-15 85.1 84 48.8
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 3.8e-15 84.7 86 48.8
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 6.6e-15 84.0 88 44.3
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 1.1e-14 83.2 86 44.2
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 1.1e-14 83.2 84 46.4
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 1.1e-14 83.2 84 45.2
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.5e-14 82.8 87 46.0
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.5e-14 82.8 87 46.0
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.5e-14 82.8 87 46.0
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 1.9e-14 82.4 88 43.2
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 4.2e-14 81.3 86 43.0
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 4.2e-14 81.3 86 43.0
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 4.2e-14 81.3 86 43.0
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 4.2e-14 81.3 86 43.0
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 5.5e-14 80.9 87 44.8
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 5.5e-14 80.9 84 41.7
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.6e-13 79.3 86 41.9
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 2.1e-13 79.0 87 41.4
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.1e-13 79.0 86 41.9
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 2.1e-13 79.0 87 47.1
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 2.8e-13 78.6 84 38.1
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 3.6e-13 78.2 83 41.0
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 4.7e-13 77.8 86 43.0
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 4.7e-13 77.8 87 47.1
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 4.7e-13 77.8 79 51.9
Aqoxy3G03064 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 6.1e-13 77.4 86 40.7
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 6.1e-13 77.4 86 43.0
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 8.0e-13 77.0 89 40.4
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 8.0e-13 77.0 84 41.7
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 8.0e-13 77.0 83 43.4
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 8.0e-13 77.0 86 41.9
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.0e-12 76.6 87 35.6
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 1.4e-12 76.3 84 35.7
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 1.4e-12 76.3 87 39.1
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 1.8e-12 75.9 87 39.1
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 1.8e-12 75.9 84 39.3
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 2.3e-12 75.5 83 43.4
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 2.3e-12 75.5 86 36.0
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 2.3e-12 75.5 83 39.8
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 3.0e-12 75.1 84 33.3
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 3.0e-12 75.1 89 39.3
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 6.8e-12 73.9 87 33.3
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 8.9e-12 73.6 84 38.1
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 8.9e-12 73.6 84 33.3
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 8.9e-12 73.6 84 33.3
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 8.9e-12 73.6 77 35.1
HanXRQChr13g0390251 Helianthus annuus HOM05D004264 ORTHO05D004680 8.9e-12 73.6 63 49.2
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 1.2e-11 73.2 86 38.4
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 1.5e-11 72.8 88 37.5
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 1.5e-11 72.8 87 37.9
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 1.5e-11 72.8 82 36.6
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 2.0e-11 72.4 80 41.2
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 2.6e-11 72.0 84 33.3
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 3.4e-11 71.6 55 58.2
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 4.4e-11 71.2 86 37.2
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 4.4e-11 71.2 87 39.1
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 7.5e-11 70.5 82 36.6
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 7.5e-11 70.5 86 38.4
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 9.8e-11 70.1 83 38.6
Haze_21060 Corylus avellana HOM05D004264 ORTHO05D004680 9.8e-11 70.1 58 51.7
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 9.8e-11 70.1 84 36.9
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 1.3e-10 69.7 87 39.1
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 1.3e-10 69.7 59 50.8
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 2.8e-10 68.6 82 35.4
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 2.8e-10 68.6 88 36.4
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 3.7e-10 68.2 86 34.9
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 4.9e-10 67.8 86 34.9
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 4.9e-10 67.8 88 35.2
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 6.3e-10 67.4 58 46.6
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 1.1e-09 66.6 58 46.6
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 1.4e-09 66.2 77 36.4
PGSC0003DMG400031135 Solanum tuberosum HOM05D004264 ORTHO05D004680 1.4e-09 66.2 57 47.4
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 1.4e-09 66.2 85 30.6
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 2.4e-09 65.5 86 34.9
CSS0010779 Camellia sinensis var. sinensis HOM05D004264 ORTHO05D004680 4.1e-09 64.7 66 47.0
HanXRQChr02g0036821 Helianthus annuus HOM05D004264 ORTHO05D004680 4.1e-09 64.7 61 42.6
TPR.G1155 Trifolium pratense HOM05D004264 ORTHO05D004680 4.1e-09 64.7 70 40.0
Os04g0445400 Oryza sativa ssp. japonica HOM05D004264 ORTHO05D004680 1.6e-08 62.8 63 46.0
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 2.0e-08 62.4 86 31.4
Ca_07679_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 2.0e-08 62.4 58 41.4
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 7.8e-08 60.5 87 36.8
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 1.7e-07 59.3 85 40.0
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 1.7e-07 59.3 86 34.9
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 3.9e-07 58.2 78 34.6
DCAR_018675 Daucus carota HOM05D004264 ORTHO05D004680 5.0e-07 57.8 58 44.8
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 6.6e-07 57.4 86 32.6
PSO782G0806 Papaver somniferum HOM05D004264 ORTHO05D004680 9.5e-06 53.5 61 42.6


User provided reference genes

Program Settings