Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 4.9e-143 511.1 263 100.0
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 3.3e-99 365.5 194 100.0
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 1.6e-69 266.9 171 77.8
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 3.6e-69 265.8 154 86.4
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 8.0e-69 264.6 202 72.3
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 1.8e-68 263.5 176 76.7
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.8e-68 263.5 147 87.8
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 2.3e-68 263.1 200 72.5
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.3e-68 263.1 200 72.5
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 4.0e-68 262.3 197 71.6
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 4.0e-68 262.3 200 72.5
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 5.2e-68 261.9 204 72.1
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 6.8e-68 261.5 216 68.5
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 6.8e-68 261.5 201 71.1
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 6.8e-68 261.5 171 78.9
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 1.2e-67 260.8 173 75.7
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 1.2e-67 260.8 198 70.7
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 1.5e-67 260.4 145 87.6
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 1.5e-67 260.4 199 71.4
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.5e-67 260.4 200 71.5
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.5e-67 260.4 200 71.5
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 2.0e-67 260.0 167 77.8
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 2.6e-67 259.6 152 83.6
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 2.6e-67 259.6 193 70.5
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 3.4e-67 259.2 174 75.9
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 3.4e-67 259.2 174 77.0
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 4.4e-67 258.8 174 77.0
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 4.4e-67 258.8 200 73.0
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 4.4e-67 258.8 148 86.5
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 4.4e-67 258.8 197 71.6
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 4.4e-67 258.8 196 70.4
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 4.4e-67 258.8 194 72.7
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 5.7e-67 258.5 208 67.8
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 5.7e-67 258.5 145 86.2
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 5.7e-67 258.5 195 72.3
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 7.5e-67 258.1 188 71.8
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 7.5e-67 258.1 187 71.1
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 7.5e-67 258.1 199 70.9
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 7.5e-67 258.1 203 69.5
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 7.5e-67 258.1 140 88.6
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 7.5e-67 258.1 145 86.9
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 9.8e-67 257.7 143 87.4
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 9.8e-67 257.7 143 87.4
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 9.8e-67 257.7 143 87.4
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 9.8e-67 257.7 198 69.2
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 9.8e-67 257.7 153 82.4
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 9.8e-67 257.7 200 70.5
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.3e-66 257.3 200 71.0
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.3e-66 257.3 174 75.3
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 1.3e-66 257.3 167 74.9
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 1.3e-66 257.3 171 76.0
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 1.7e-66 256.9 145 86.9
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 1.7e-66 256.9 165 78.8
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 1.7e-66 256.9 201 69.7
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 1.7e-66 256.9 198 69.2
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 1.7e-66 256.9 145 86.2
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 1.7e-66 256.9 197 69.5
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 2.2e-66 256.5 137 90.5
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 2.2e-66 256.5 145 86.9
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 2.2e-66 256.5 174 76.4
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.2e-66 256.5 143 86.7
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 2.2e-66 256.5 144 85.4
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 2.2e-66 256.5 187 72.2
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 2.8e-66 256.1 199 69.3
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 2.8e-66 256.1 187 72.2
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 2.8e-66 256.1 187 72.2
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 2.8e-66 256.1 187 72.2
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 2.8e-66 256.1 187 72.2
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 2.8e-66 256.1 198 71.2
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 2.8e-66 256.1 202 70.3
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 3.7e-66 255.8 155 82.6
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 3.7e-66 255.8 199 70.9
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 3.7e-66 255.8 199 70.4
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 3.7e-66 255.8 174 75.3
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 3.7e-66 255.8 198 71.7
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 3.7e-66 255.8 203 69.5
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 4.9e-66 255.4 197 72.1
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 4.9e-66 255.4 206 69.9
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 4.9e-66 255.4 199 69.3
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 8.3e-66 254.6 202 69.3
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 8.3e-66 254.6 155 80.6
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 8.3e-66 254.6 194 71.1
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 8.3e-66 254.6 194 70.6
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 8.3e-66 254.6 197 71.1
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 1.1e-65 254.2 145 85.5
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 1.1e-65 254.2 198 70.7
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 1.1e-65 254.2 202 68.3
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 1.1e-65 254.2 203 69.0
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 1.4e-65 253.8 133 91.0
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 1.4e-65 253.8 195 69.7
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 1.8e-65 253.4 173 75.7
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 1.8e-65 253.4 205 69.3
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.8e-65 253.4 174 74.7
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 2.4e-65 253.1 204 69.1
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 2.4e-65 253.1 195 69.2
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 2.4e-65 253.1 206 68.9
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.4e-65 253.1 174 74.7
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 2.4e-65 253.1 133 91.0
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 2.4e-65 253.1 203 68.5
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 2.4e-65 253.1 206 68.4
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 3.1e-65 252.7 145 84.1
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 3.1e-65 252.7 174 74.1
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 3.1e-65 252.7 197 70.6
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 4.1e-65 252.3 165 75.8
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 4.1e-65 252.3 174 73.0
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 4.1e-65 252.3 194 68.6
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 4.1e-65 252.3 198 69.7
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 5.4e-65 251.9 194 69.1
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 5.4e-65 251.9 198 70.2
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 7.0e-65 251.5 196 70.4
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 7.0e-65 251.5 201 67.2
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 7.0e-65 251.5 136 87.5
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 9.2e-65 251.1 194 70.6
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 9.2e-65 251.1 200 68.0
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 9.2e-65 251.1 198 67.7
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 9.2e-65 251.1 202 69.3
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 9.2e-65 251.1 193 67.9
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 9.2e-65 251.1 191 69.6
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 1.2e-64 250.8 204 71.1
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 1.2e-64 250.8 205 69.3
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 3.5e-64 249.2 191 69.1
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 5.9e-64 248.4 197 69.0
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 7.8e-64 248.1 199 68.3
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 1.0e-63 247.7 194 67.0
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 1.3e-63 247.3 145 82.8
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 5.0e-63 245.4 197 67.5
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 6.6e-63 245.0 204 65.7
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 8.6e-63 244.6 197 66.0
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 1.1e-62 244.2 205 63.9
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 4.3e-62 242.3 189 67.2
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 7.3e-62 241.5 198 67.2
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 1.6e-61 240.4 194 69.6
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 3.0e-60 236.1 162 74.1
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 5.2e-60 235.3 207 63.8
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 8.9e-60 234.6 198 64.6
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 3.4e-59 232.6 154 77.3
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 2.9e-58 229.6 194 65.5
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 2.9e-58 229.6 194 65.5
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 5.4e-57 225.3 142 79.6
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 1.0e-55 221.1 158 71.5
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 2.3e-55 219.9 133 79.7
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 4.7e-53 212.2 139 73.4
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 2.3e-52 209.9 201 61.2
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 5.2e-52 208.8 203 61.1
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 5.8e-51 205.3 194 60.3
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 7.5e-43 178.3 143 65.7
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 9.9e-35 151.4 169 53.3
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 4.9e-34 149.1 82 85.4
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 3.5e-32 142.9 207 49.3
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 5.2e-28 129.0 72 86.1
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 9.3e-25 118.2 172 44.2
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 4.3e-14 82.8 56 69.6
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 2.8e-13 80.1 56 71.4
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 1.4e-12 77.8 56 69.6
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 2.6e-11 73.6 79 54.4


User provided reference genes

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