Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_23842 Sequoiadendron giganteum HOM05D003412 ORTHO05D003962 4.2e-51 204.5 112 100.0
SEGI_01307 Sequoiadendron giganteum HOM05D003412 ORTHO05D003962 2.4e-38 162.2 100 92.0
Rhsim05G0121800 Rhododendron simsii HOM05D003412 ORTHO05D003962 6.3e-15 84.3 88 55.7
Ah.06g190650 Amaranthus hybridus HOM05D003412 ORTHO05D003962 7.7e-13 77.4 93 50.5
ATR0796G311 Amborella trichopoda HOM05D003412 ORTHO05D003962 1.7e-12 76.3 74 54.1
Nn4g25397 Nelumbo nucifera HOM05D003412 ORTHO05D003962 1.7e-12 76.3 96 49.0
Dinv24506 Davidia involucrata HOM05D003412 ORTHO05D003962 2.2e-12 75.9 84 53.6
Dinv30941 Davidia involucrata HOM05D003412 ORTHO05D003962 2.2e-12 75.9 83 54.2
Actinidia16911 Actinidia chinensis HOM05D003412 ORTHO05D003962 3.8e-12 75.1 93 50.5
Mapoly0116s0017 Marchantia polymorpha HOM05D003412 ORTHO05D003962 5.0e-12 74.7 97 43.3
Eucgr.H01317 Eucalyptus grandis HOM05D003412 ORTHO05D003962 6.5e-12 74.3 84 51.2
Hma1.2p1_0052F.1_g030415 Hydrangea macrophylla HOM05D003412 ORTHO05D003962 6.5e-12 74.3 85 52.9
TAR636G2549 Trochodendron aralioides HOM05D003412 ORTHO05D003962 6.5e-12 74.3 97 51.5
Duzib177G0752 Durio zibethinus HOM05D003412 ORTHO05D003962 1.1e-11 73.6 84 52.4
Actinidia01664 Actinidia chinensis HOM05D003412 ORTHO05D003962 1.9e-11 72.8 84 52.4
CANSAT54G2189 Cannabis sativa HOM05D003412 ORTHO05D003962 1.9e-11 72.8 89 46.1
CiPaw.07G035400 Carya illinoinensis HOM05D003412 ORTHO05D003962 1.9e-11 72.8 88 48.9
Sopen01g044580 Solanum pennellii HOM05D003412 ORTHO05D003962 1.9e-11 72.8 84 52.4
PGSC0003DMG400018247 Solanum tuberosum HOM05D003412 ORTHO05D003962 1.9e-11 72.8 84 52.4
Thecc.05G329000 Theobroma cacao HOM05D003412 ORTHO05D003962 1.9e-11 72.8 84 52.4
arahy.Tifrunner.gnm1.ann1.WSUD3I Arachis hypogaea HOM05D003412 ORTHO05D003962 2.5e-11 72.4 84 52.4
MSTRG.16423 Avicennia marina HOM05D003412 ORTHO05D003962 3.2e-11 72.0 100 46.0
Nitab4.5_0001931g0010 Nicotiana tabacum HOM05D003412 ORTHO05D003962 3.2e-11 72.0 85 49.4
Solyc01g101130.3 Solanum lycopersicum HOM05D003412 ORTHO05D003962 3.2e-11 72.0 91 49.5
arahy.Tifrunner.gnm1.ann1.LCTE14 Arachis hypogaea HOM05D003412 ORTHO05D003962 4.2e-11 71.6 84 52.4
Duzib128G1566 Durio zibethinus HOM05D003412 ORTHO05D003962 5.5e-11 71.2 93 48.4
Gorai.013G131200 Gossypium raimondii HOM05D003412 ORTHO05D003962 5.5e-11 71.2 84 51.2
Nitab4.5_0014791g0020 Nicotiana tabacum HOM05D003412 ORTHO05D003962 5.5e-11 71.2 85 49.4
QL03p010471 Quercus lobata HOM05D003412 ORTHO05D003962 5.5e-11 71.2 84 50.0
DCAR_029287 Daucus carota HOM05D003412 ORTHO05D003962 9.4e-11 70.5 84 50.0
TWI56G0029 Tripterygium wilfordii HOM05D003412 ORTHO05D003962 9.4e-11 70.5 84 48.8
TAR365G0256 Trochodendron aralioides HOM05D003412 ORTHO05D003962 9.4e-11 70.5 94 51.1
BcaC05g30086 Brassica carinata HOM05D003412 ORTHO05D003962 1.2e-10 70.1 84 51.2
C05p61450 Brassica napus HOM05D003412 ORTHO05D003962 1.2e-10 70.1 84 51.2
BolC5t34803H Brassica oleracea HOM05D003412 ORTHO05D003962 1.2e-10 70.1 84 51.2
Ciclev10012076m.g Citrus clementina HOM05D003412 ORTHO05D003962 1.2e-10 70.1 93 45.2
Glyma.20G092900 Glycine max HOM05D003412 ORTHO05D003962 1.2e-10 70.1 97 46.4
Nn3g21904 Nelumbo nucifera HOM05D003412 ORTHO05D003962 1.2e-10 70.1 94 47.9
Cpa.g.sc48.220 Carica papaya HOM05D003412 ORTHO05D003962 1.6e-10 69.7 88 48.9
COL.COLO4_05512 Corchorus olitorius HOM05D003412 ORTHO05D003962 1.6e-10 69.7 84 50.0
Gohir.D13G116700 Gossypium hirsutum HOM05D003412 ORTHO05D003962 1.6e-10 69.7 84 50.0
Aqoxy2G02528 Aquilegia oxysepala HOM05D003412 ORTHO05D003962 2.1e-10 69.3 84 51.2
BcaC05g29778 Brassica carinata HOM05D003412 ORTHO05D003962 2.1e-10 69.3 84 50.0
AUR62006809 Chenopodium quinoa HOM05D003412 ORTHO05D003962 2.1e-10 69.3 94 46.8
Hma1.2p1_3304F.1_g335080 Hydrangea macrophylla HOM05D003412 ORTHO05D003962 2.1e-10 69.3 81 51.9
PGR031G1608 Punica granatum HOM05D003412 ORTHO05D003962 2.1e-10 69.3 84 47.6
Prupe.6G305600 Prunus persica HOM05D003412 ORTHO05D003962 3.6e-10 68.6 97 43.3
CDE08G0751 Ceratophyllum demersum HOM05D003412 ORTHO05D003962 4.7e-10 68.2 89 48.3
TAR362G0077 Trochodendron aralioides HOM05D003412 ORTHO05D003962 4.7e-10 68.2 96 44.8
TAR365G0905 Trochodendron aralioides HOM05D003412 ORTHO05D003962 4.7e-10 68.2 94 50.0
CiPaw.08G150800 Carya illinoinensis HOM05D003412 ORTHO05D003962 6.1e-10 67.8 84 47.6
Glyma.10G144000 Glycine max HOM05D003412 ORTHO05D003962 6.1e-10 67.8 88 48.9
Manes.09G180600 Manihot esculenta HOM05D003412 ORTHO05D003962 6.1e-10 67.8 84 50.0
A05p42230 Brassica napus HOM05D003412 ORTHO05D003962 8.0e-10 67.4 84 51.2
BraA05t22941Z Brassica rapa HOM05D003412 ORTHO05D003962 8.0e-10 67.4 84 51.2
CSS0037128 Camellia sinensis var. sinensis HOM05D003412 ORTHO05D003962 8.0e-10 67.4 82 50.0
Migut.N00969 Erythranthe guttata HOM05D003412 ORTHO05D003962 8.0e-10 67.4 87 47.1
Oeu036644.1 Olea europaea HOM05D003412 ORTHO05D003962 8.0e-10 67.4 97 45.4
QL03p010236 Quercus lobata HOM05D003412 ORTHO05D003962 8.0e-10 67.4 88 48.9
Potri.013G003400 Populus trichocarpa HOM05D003412 ORTHO05D003962 1.0e-09 67.0 88 47.7
vmacro19768 Vaccinium macrocarpon HOM05D003412 ORTHO05D003962 1.0e-09 67.0 106 44.3
VMungo0720G0630 Vigna mungo HOM05D003412 ORTHO05D003962 1.4e-09 66.6 88 47.7
PSO210G2054 Papaver somniferum HOM05D003412 ORTHO05D003962 1.8e-09 66.2 96 41.7
Sabra05G0000900 Salix brachista HOM05D003412 ORTHO05D003962 1.8e-09 66.2 97 44.3
Aa31LG5G16210 Aethionema arabicum HOM05D003412 ORTHO05D003962 2.3e-09 65.9 84 47.6
ClCG02G014670 Citrullus lanatus HOM05D003412 ORTHO05D003962 3.0e-09 65.5 86 45.3
MELO3C004154.2 Cucumis melo HOM05D003412 ORTHO05D003962 3.0e-09 65.5 86 45.3
DCAR_025305 Daucus carota HOM05D003412 ORTHO05D003962 3.0e-09 65.5 96 40.6
ECA236G3082 Erigeron canadensis HOM05D003412 ORTHO05D003962 3.0e-09 65.5 84 47.6
MBI19_g32732_MAGBIO Magnolia biondii HOM05D003412 ORTHO05D003962 3.0e-09 65.5 84 50.0
Manes.08G107900 Manihot esculenta HOM05D003412 ORTHO05D003962 3.0e-09 65.5 84 47.6
arahy.Tifrunner.gnm1.ann1.7ZMX5M Arachis hypogaea HOM05D003412 ORTHO05D003962 4.0e-09 65.1 80 48.8
Lj5g0005042 Lotus japonicus HOM05D003412 ORTHO05D003962 4.0e-09 65.1 89 46.1
MD04G1187100 Malus domestica HOM05D003412 ORTHO05D003962 5.2e-09 64.7 84 45.2
RcHm_v2.0_Chr3g0458381 Rosa chinensis HOM05D003412 ORTHO05D003962 5.2e-09 64.7 88 45.5
GSVIVG01028212001 Vitis vinifera HOM05D003412 ORTHO05D003962 5.2e-09 64.7 96 45.8
MSTRG.27914 Avicennia marina HOM05D003412 ORTHO05D003962 6.8e-09 64.3 82 48.8
MSTRG.5167 Avicennia marina HOM05D003412 ORTHO05D003962 6.8e-09 64.3 100 40.0
Haze_03996 Corylus avellana HOM05D003412 ORTHO05D003962 6.8e-09 64.3 89 46.1
Lalb_Chr21g0310081 Lupinus albus HOM05D003412 ORTHO05D003962 6.8e-09 64.3 84 46.4
PSO761G0645 Papaver somniferum HOM05D003412 ORTHO05D003962 6.8e-09 64.3 96 40.6
PGR083G2508 Punica granatum HOM05D003412 ORTHO05D003962 6.8e-09 64.3 84 45.2
Sp3g04690 Schrenkiella parvula HOM05D003412 ORTHO05D003962 6.8e-09 64.3 84 47.6
Lalb_Chr06g0167331 Lupinus albus HOM05D003412 ORTHO05D003962 8.8e-09 63.9 84 46.4
Sc16g0009380 Simmondsia chinensis HOM05D003412 ORTHO05D003962 8.8e-09 63.9 88 44.3
Eucgr.B01817 Eucalyptus grandis HOM05D003412 ORTHO05D003962 1.2e-08 63.5 84 48.8
THA.LOC104821745 Tarenaya hassleriana HOM05D003412 ORTHO05D003962 1.2e-08 63.5 84 45.2
TPR.G2623 Trifolium pratense HOM05D003412 ORTHO05D003962 1.2e-08 63.5 84 47.6
AT3G05830 Arabidopsis thaliana HOM05D003412 ORTHO05D003962 1.5e-08 63.2 84 46.4
Lsat_1_v5_gn_9_77100 Lactuca sativa HOM05D003412 ORTHO05D003962 1.5e-08 63.2 84 47.6
vmacro01603 Vaccinium macrocarpon HOM05D003412 ORTHO05D003962 1.5e-08 63.2 88 48.9
CARHR080290 Cardamine hirsuta HOM05D003412 ORTHO05D003962 2.0e-08 62.8 96 42.7
CDE02G2375 Ceratophyllum demersum HOM05D000427 ORTHO05D000386 2.0e-08 62.8 84 46.4
Thhalv10021934m.g Eutrema salsugineum HOM05D003412 ORTHO05D003962 2.0e-08 62.8 84 46.4
Medtr1g484830 Medicago truncatula HOM05D003412 ORTHO05D003962 2.0e-08 62.8 84 48.8
AL3G16570 Arabidopsis lyrata HOM05D003412 ORTHO05D003962 2.6e-08 62.4 84 46.4
THA.LOC104816843 Tarenaya hassleriana HOM05D003412 ORTHO05D003962 2.6e-08 62.4 88 45.5
HPP92_026058 Vanilla planifolia HOM05D003412 ORTHO05D003962 4.4e-08 61.6 89 41.6
Zm00001eb354610 Zea mays HOM05D003412 ORTHO05D003962 4.4e-08 61.6 84 45.2
Ca_10195_v3 Cicer arietinum L. HOM05D003412 ORTHO05D003962 7.5e-08 60.8 84 46.4
FAN05G5683 Fragaria x ananassa HOM05D003412 ORTHO05D003962 7.5e-08 60.8 90 44.4
FAN09G0161 Fragaria x ananassa HOM05D003412 ORTHO05D003962 7.5e-08 60.8 90 44.4
FAN14G3569 Fragaria x ananassa HOM05D003412 ORTHO05D003962 7.5e-08 60.8 90 44.4
Zm00001eb129850 Zea mays HOM05D003412 ORTHO05D003962 7.5e-08 60.8 91 44.0
arahy.Tifrunner.gnm1.ann1.36CNLM Arachis hypogaea HOM05D003412 ORTHO05D003962 9.8e-08 60.5 87 47.1
arahy.Tifrunner.gnm1.ann1.D23GS1 Arachis hypogaea HOM05D003412 ORTHO05D003962 9.8e-08 60.5 87 47.1
EL10Ac4g09549 Beta vulgaris HOM05D003412 ORTHO05D003962 9.8e-08 60.5 88 46.6
Carub.0003s0519 Capsella rubella HOM05D003412 ORTHO05D003962 9.8e-08 60.5 84 45.2
BcaB04g19713 Brassica carinata HOM05D003412 ORTHO05D003962 1.3e-07 60.1 84 45.2
Os05g0135900 Oryza sativa ssp. japonica HOM05D003412 ORTHO05D003962 1.3e-07 60.1 84 45.2
Sed0023403 Sechium edule HOM05D003412 ORTHO05D003962 1.3e-07 60.1 96 39.6
arahy.Tifrunner.gnm1.ann1.US2PL9 Arachis hypogaea HOM05D003412 ORTHO05D003962 1.7e-07 59.7 74 48.6
THA.LOC104818749 Tarenaya hassleriana HOM05D003412 ORTHO05D003962 1.7e-07 59.7 84 44.0
Thhalv10004552m.g Eutrema salsugineum HOM05D003412 ORTHO05D003962 2.2e-07 59.3 84 42.9
Aa31LG1G5630 Aethionema arabicum HOM05D003412 ORTHO05D003962 3.7e-07 58.5 94 41.5
Carub.0006s2442 Capsella rubella HOM05D003412 ORTHO05D003962 3.7e-07 58.5 93 40.9
Potri.005G003600 Populus trichocarpa HOM05D003412 ORTHO05D003962 4.8e-07 58.2 84 42.9
Sabra05G0015000 Salix brachista HOM05D003412 ORTHO05D003962 4.8e-07 58.2 109 39.4
Sabra13G0002900 Salix brachista HOM05D003412 ORTHO05D003962 4.8e-07 58.2 88 43.2
CARHR186800 Cardamine hirsuta HOM05D003412 ORTHO05D003962 6.3e-07 57.8 94 40.4
Psat6g155400 Pisum sativum HOM05D003412 ORTHO05D003962 6.3e-07 57.8 84 44.0
BraA09t36208Z Brassica rapa HOM05D003412 ORTHO05D003962 8.3e-07 57.4 87 40.2
MD12G1200500 Malus domestica HOM05D003412 ORTHO05D003962 8.3e-07 57.4 83 44.6
A06p06180 Brassica napus HOM05D003412 ORTHO05D003962 1.1e-06 57.0 95 42.1
A09p05660 Brassica napus HOM05D003412 ORTHO05D003962 1.1e-06 57.0 93 39.8
GSVIVG01031318001 Vitis vinifera HOM05D003412 ORTHO05D003962 1.1e-06 57.0 89 39.3
Zm00001eb417390 Zea mays HOM05D003412 ORTHO05D003962 1.1e-06 57.0 84 42.9
C07p41480 Brassica napus HOM05D003412 ORTHO05D003962 1.4e-06 56.6 96 39.6
BolC7t44681H Brassica oleracea HOM05D003412 ORTHO05D003962 1.4e-06 56.6 96 39.6
Carub.0001s0882 Capsella rubella HOM05D003412 ORTHO05D003962 1.8e-06 56.2 88 42.0
CsaV3_2G007300 Cucumis sativus L. HOM05D003412 ORTHO05D003962 2.4e-06 55.8 104 39.4
Migut.B00877 Erythranthe guttata HOM05D003412 ORTHO05D003962 2.4e-06 55.8 76 46.1
Thhalv10008143m.g Eutrema salsugineum HOM05D003412 ORTHO05D003962 2.4e-06 55.8 88 42.0
Rhsim11G0101900 Rhododendron simsii HOM05D003412 ORTHO05D003962 2.4e-06 55.8 95 43.2
AL6G38640 Arabidopsis lyrata HOM05D003412 ORTHO05D003962 3.1e-06 55.5 93 39.8
BcaNung03675 Brassica carinata HOM05D003412 ORTHO05D003962 4.1e-06 55.1 93 39.8
CARHR009430 Cardamine hirsuta HOM05D003412 ORTHO05D003962 4.1e-06 55.1 88 40.9
PSO357G0133 Papaver somniferum HOM05D003412 ORTHO05D003962 4.1e-06 55.1 93 38.7
Aa31LG11G9870 Aethionema arabicum HOM05D003412 ORTHO05D003962 5.4e-06 54.7 84 39.3
AT5G26770 Arabidopsis thaliana HOM05D003412 ORTHO05D003962 5.4e-06 54.7 93 39.8
Sp1g08080 Schrenkiella parvula HOM05D003412 ORTHO05D003962 5.4e-06 54.7 88 40.9
Sp2g21210 Schrenkiella parvula HOM05D003412 ORTHO05D003962 5.4e-06 54.7 83 41.0
A06p37010 Brassica napus HOM05D003412 ORTHO05D003962 7.0e-06 54.3 93 38.7
BraA06t26626Z Brassica rapa HOM05D003412 ORTHO05D003962 7.0e-06 54.3 93 38.7


User provided reference genes

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