Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_23790 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 1.4e-56 222.6 107 100.0
SEGI_31295 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 3.9e-30 134.8 73 90.4
SEGI_39882 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 5.4e-24 114.4 80 70.0
Pp3c12_1870 Physcomitrium patens HOM05D005676 ORTHO05D007375 2.6e-18 95.5 76 61.8
AagrBONN_evm.TU.Sc2ySwM_368.2853 Anthoceros agrestis HOM05D005676 ORTHO05D007375 2.2e-17 92.4 73 58.9
Mapoly0008s0022 Marchantia polymorpha HOM05D005676 ORTHO05D007375 3.9e-14 81.6 66 59.1
MBI18_g13693_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 4.3e-13 78.2 71 54.9
MBI18_g13694_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 9.6e-13 77.0 73 52.1
Peaxi162Scf00786g00018 Petunia axillaris HOM05D005676 ORTHO05D007375 9.0e-11 70.5 75 42.7
ATR0602G016 Amborella trichopoda HOM05D005676 ORTHO05D007375 1.0e-09 67.0 75 45.3
Sc01g0002640 Simmondsia chinensis HOM05D005676 ORTHO05D007375 1.0e-09 67.0 77 39.0
Gohir.D11G101600 Gossypium hirsutum HOM05D005676 ORTHO05D007375 1.3e-09 66.6 77 41.6
Gorai.007G108400 Gossypium raimondii HOM05D005676 ORTHO05D007375 1.3e-09 66.6 77 41.6
Duzib268G0021 Durio zibethinus HOM05D005676 ORTHO05D007375 2.2e-09 65.9 77 40.3
Cfa003798 Carpinus fangiana HOM05D005676 ORTHO05D007375 2.9e-09 65.5 78 39.7
Dinv32595 Davidia involucrata HOM05D005676 ORTHO05D007375 2.9e-09 65.5 81 40.7
Gohir.A11G096900 Gossypium hirsutum HOM05D005676 ORTHO05D007375 3.8e-09 65.1 77 41.6
Nitab4.5_0000172g0490 Nicotiana tabacum HOM05D005676 ORTHO05D007375 3.8e-09 65.1 77 37.7
Thecc.01G342000 Theobroma cacao HOM05D005676 ORTHO05D007375 3.8e-09 65.1 77 39.0
Ah.05g179510 Amaranthus hybridus HOM05D005676 ORTHO05D007375 4.9e-09 64.7 73 41.1
ClCG05G000790 Citrullus lanatus HOM05D005676 ORTHO05D007375 6.5e-09 64.3 73 42.5
Haze_15661 Corylus avellana HOM05D005676 ORTHO05D007375 8.4e-09 63.9 75 38.7
ECA246G1832 Erigeron canadensis HOM05D000467 ORTHO05D000379 8.4e-09 63.9 73 42.5
Lsat_1_v5_gn_3_140321 Lactuca sativa HOM05D005676 ORTHO05D007375 8.4e-09 63.9 75 40.0
Nitab4.5_0013740g0030 Nicotiana tabacum HOM05D005676 ORTHO05D007375 8.4e-09 63.9 77 37.7
Hund16716 Selenicereus undatus HOM05D005676 ORTHO05D007375 8.4e-09 63.9 77 39.0
A07p25740 Brassica napus HOM05D005676 ORTHO05D007375 1.1e-08 63.5 75 41.3
BraA07t30214Z Brassica rapa HOM05D005676 ORTHO05D007375 1.1e-08 63.5 75 41.3
Nn1g00247 Nelumbo nucifera HOM05D005676 ORTHO05D007375 1.1e-08 63.5 77 40.3
GSVIVG01027152001 Vitis vinifera HOM05D005676 ORTHO05D007375 1.1e-08 63.5 77 40.3
CDE02G3410 Ceratophyllum demersum HOM05D007342 ORTHO05D009252 1.4e-08 63.2 64 35.9
COL.COLO4_06282 Corchorus olitorius HOM05D005676 ORTHO05D007375 1.4e-08 63.2 75 40.0
CsaV3_3G008030 Cucumis sativus L. HOM05D005676 ORTHO05D007375 1.4e-08 63.2 73 41.1
PGSC0003DMG400000228 Solanum tuberosum HOM05D005676 ORTHO05D007375 1.9e-08 62.8 77 39.0
BcaC08g45161 Brassica carinata HOM05D005676 ORTHO05D007375 2.5e-08 62.4 75 40.0
BcaC08g45164 Brassica carinata HOM05D005676 ORTHO05D007375 2.5e-08 62.4 75 40.0
C06p27960 Brassica napus HOM05D005676 ORTHO05D007375 2.5e-08 62.4 75 40.0
BolC6t37957H Brassica oleracea HOM05D005676 ORTHO05D007375 2.5e-08 62.4 75 40.0
Ciclev10023383m.g Citrus clementina HOM05D005676 ORTHO05D007375 2.5e-08 62.4 77 37.7
MELO3C006021.2 Cucumis melo HOM05D005676 ORTHO05D007375 2.5e-08 62.4 73 39.7
RcHm_v2.0_Chr1g0359591 Rosa chinensis HOM05D005676 ORTHO05D007375 2.5e-08 62.4 78 34.6
Aa31LG10G15770 Aethionema arabicum HOM05D005676 ORTHO05D007375 3.2e-08 62.0 75 38.7
CiPaw.02G041000 Carya illinoinensis HOM05D005676 ORTHO05D007375 3.2e-08 62.0 75 38.7
Solyc01g096010.4 Solanum lycopersicum HOM05D005676 ORTHO05D007375 4.2e-08 61.6 71 40.8
Sopen01g039730 Solanum pennellii HOM05D005676 ORTHO05D007375 4.2e-08 61.6 71 40.8
AL5G44340 Arabidopsis lyrata HOM05D005676 ORTHO05D007375 5.5e-08 61.2 75 40.0
AT3G61780 Arabidopsis thaliana HOM05D005676 ORTHO05D007375 5.5e-08 61.2 75 38.7
CSS0030996 Camellia sinensis var. sinensis HOM05D005676 ORTHO05D007375 5.5e-08 61.2 81 39.5
HanXRQChr11g0352981 Helianthus annuus HOM05D005676 ORTHO05D007375 5.5e-08 61.2 75 38.7
Potri.014G099100 Populus trichocarpa HOM05D005676 ORTHO05D007375 5.5e-08 61.2 75 38.7
THA.LOC104817362 Tarenaya hassleriana HOM05D005676 ORTHO05D007375 5.5e-08 61.2 75 36.0
Carub.0005s2852 Capsella rubella HOM05D005676 ORTHO05D007375 7.1e-08 60.8 75 40.0
AUR62023455 Chenopodium quinoa HOM05D005676 ORTHO05D007375 7.1e-08 60.8 81 34.6
Hma1.2p1_0139F.1_g063260 Hydrangea macrophylla HOM05D005676 ORTHO05D007375 7.1e-08 60.8 75 37.3
Manes.01G246200 Manihot esculenta HOM05D005676 ORTHO05D007375 7.1e-08 60.8 75 37.3
Sabra14G0072700 Salix brachista HOM05D005676 ORTHO05D007375 7.1e-08 60.8 75 38.7
Sp5g01590 Schrenkiella parvula HOM05D005676 ORTHO05D007375 7.1e-08 60.8 75 38.7
Sed0007378 Sechium edule HOM05D005676 ORTHO05D007375 7.1e-08 60.8 73 39.7
Actinidia10141 Actinidia chinensis HOM05D005676 ORTHO05D007375 9.3e-08 60.5 71 40.8
Cpa.g.sc96.24 Carica papaya HOM05D005676 ORTHO05D007375 9.3e-08 60.5 77 36.4
CAN.G1415.28 Capsicum annuum HOM05D005676 ORTHO05D007375 1.6e-07 59.7 71 39.4
CARHR172110 Cardamine hirsuta HOM05D005676 ORTHO05D007375 1.6e-07 59.7 75 37.3
FAN03G1248 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.6e-07 59.7 78 33.3
FAN10G0710 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.6e-07 59.7 78 33.3
FAN10G1066 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.6e-07 59.7 78 33.3
AUR62004498 Chenopodium quinoa HOM05D005676 ORTHO05D007375 2.1e-07 59.3 71 36.6
Thhalv10005757m.g Eutrema salsugineum HOM05D005676 ORTHO05D007375 2.1e-07 59.3 75 37.3
EL10Ac1g00264 Beta vulgaris HOM05D005676 ORTHO05D007375 2.7e-07 58.9 81 34.6
CDE02G4093 Ceratophyllum demersum HOM05D005676 ORTHO05D007375 2.7e-07 58.9 76 38.2
Cc02_g39430 Coffea canephora HOM05D005676 ORTHO05D007375 2.7e-07 58.9 73 39.7
MSTRG.17345 Avicennia marina HOM05D005676 ORTHO05D007375 3.5e-07 58.5 77 39.0
TAR636G2851 Trochodendron aralioides HOM05D005676 ORTHO05D007375 3.5e-07 58.5 77 39.0
arahy.Tifrunner.gnm1.ann1.FH2LCI Arachis hypogaea HOM05D005676 ORTHO05D007375 4.6e-07 58.2 71 38.0
arahy.Tifrunner.gnm1.ann1.L1WQQA Arachis hypogaea HOM05D005676 ORTHO05D007375 4.6e-07 58.2 71 38.0
FvH4_7g16470 Fragaria vesca HOM05D005676 ORTHO05D007375 4.6e-07 58.2 73 34.2
FAN06G1134 Fragaria x ananassa HOM05D005676 ORTHO05D007375 4.6e-07 58.2 73 34.2
FAN06G4290 Fragaria x ananassa HOM05D005676 ORTHO05D007375 4.6e-07 58.2 73 34.2
Prupe.2G189000 Prunus persica HOM05D005676 ORTHO05D007375 4.6e-07 58.2 78 32.1
Migut.B01876 Erythranthe guttata HOM05D005676 ORTHO05D007375 6.0e-07 57.8 73 37.0
Lalb_Chr17g0342721 Lupinus albus HOM05D005676 ORTHO05D007375 6.0e-07 57.8 71 38.0
MBI06_g46583_MAGBIO Magnolia biondii HOM05D005676 ORTHO05D007375 6.0e-07 57.8 76 36.8
MD01G1081300 Malus domestica HOM05D005676 ORTHO05D007375 6.0e-07 57.8 78 34.6
Medtr8g027605 Medicago truncatula HOM05D005676 ORTHO05D007375 7.9e-07 57.4 71 38.0
SalBow3G4648 Salvia bowleyana HOM05D005676 ORTHO05D007375 7.9e-07 57.4 73 38.4
SalBow6G4948 Salvia bowleyana HOM05D005676 ORTHO05D007375 7.9e-07 57.4 73 38.4
Actinidia20244 Actinidia chinensis HOM05D005676 ORTHO05D007375 1.0e-06 57.0 71 42.3
Glyma.16G024100 Glycine max HOM05D005676 ORTHO05D007375 1.0e-06 57.0 75 36.0
Oeu043238.1 Olea europaea HOM05D005676 ORTHO05D007375 1.8e-06 56.2 73 38.4
MD07G1150200 Malus domestica HOM05D005676 ORTHO05D007375 3.0e-06 55.5 78 33.3
Atru.chr5.673 Acer truncatum HOM05D005676 ORTHO05D007375 3.9e-06 55.1 77 35.1
VMungo0331G0849 Vigna mungo HOM05D005676 ORTHO05D007375 5.1e-06 54.7 71 36.6
DCAR_005392 Daucus carota HOM05D005676 ORTHO05D007375 8.7e-06 53.9 71 38.0
Eucgr.D02379 Eucalyptus grandis HOM05D005676 ORTHO05D007375 8.7e-06 53.9 71 36.6


User provided reference genes

Program Settings