Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_23716 Sequoiadendron giganteum HOM05D000104 ORTHO05D008076 1.1e-96 356.7 195 100.0
AagrBONN_evm.TU.Sc2ySwM_344.5090 Anthoceros agrestis HOM05D000104 ORTHO05D008076 4.3e-27 125.6 200 42.0
MBI02_g25830_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D008076 2.4e-22 109.8 199 41.2
Lsat_1_v5_gn_4_66800 Lactuca sativa HOM05D000104 ORTHO05D008076 7.1e-22 108.2 202 41.1
MD17G1236900 Malus domestica HOM05D000104 ORTHO05D008076 1.2e-21 107.5 201 38.8
Sc05g0003350 Simmondsia chinensis HOM05D000104 ORTHO05D008076 2.1e-21 106.7 209 39.2
ATR0763G024 Amborella trichopoda HOM05D000104 ORTHO05D008076 2.7e-21 106.3 81 63.0
CANSAT64G2467 Cannabis sativa HOM05D000104 ORTHO05D008076 2.7e-21 106.3 203 43.8
PGR042G0545 Punica granatum HOM05D000104 ORTHO05D008076 2.7e-21 106.3 197 41.1
THA.LOC104801170 Tarenaya hassleriana HOM05D000104 ORTHO05D008076 3.5e-21 105.9 199 39.2
AL1G13300 Arabidopsis lyrata HOM05D000104 ORTHO05D008076 1.0e-20 104.4 192 39.6
Zm00001eb220010 Zea mays HOM05D000104 ORTHO05D008076 1.3e-20 104.0 203 37.9
AT1G03750 Arabidopsis thaliana HOM05D000104 ORTHO05D008076 1.8e-20 103.6 192 39.6
CARHR003080 Cardamine hirsuta HOM05D000104 ORTHO05D008076 1.8e-20 103.6 202 39.1
BcaC07g42229 Brassica carinata HOM05D000104 ORTHO05D008076 2.3e-20 103.2 201 38.3
Carub.0001s0285 Capsella rubella HOM05D000104 ORTHO05D008076 2.3e-20 103.2 192 40.1
TWI59G0128 Tripterygium wilfordii HOM05D000104 ORTHO05D008076 2.3e-20 103.2 196 42.3
Sp1g02610 Schrenkiella parvula HOM05D000104 ORTHO05D008076 3.0e-20 102.8 202 38.1
PGSC0003DMG400032815 Solanum tuberosum HOM05D000104 ORTHO05D008076 5.1e-20 102.1 196 38.3
C08p52670 Brassica napus HOM05D000084 ORTHO05D008076 6.7e-20 101.7 196 39.3
Thhalv10006771m.g Eutrema salsugineum HOM05D000104 ORTHO05D008076 6.7e-20 101.7 207 40.1
Lj8A109T81 Lonicera japonica HOM05D000104 ORTHO05D008076 6.7e-20 101.7 205 38.5
Cpa.g.sc83.59 Carica papaya HOM05D000104 ORTHO05D008076 8.7e-20 101.3 80 67.5
CiPaw.03G178600 Carya illinoinensis HOM05D000104 ORTHO05D008076 8.7e-20 101.3 198 38.9
Gorai.008G154400 Gossypium raimondii HOM05D000104 ORTHO05D008076 8.7e-20 101.3 195 46.7
Nitab4.5_0000638g0140 Nicotiana tabacum HOM05D000104 ORTHO05D008076 8.7e-20 101.3 199 39.7
Solyc07g053870.4 Solanum lycopersicum HOM05D000104 ORTHO05D008076 8.7e-20 101.3 199 38.7
Sopen07g027840 Solanum pennellii HOM05D000104 ORTHO05D008076 8.7e-20 101.3 196 43.9
arahy.Tifrunner.gnm1.ann1.84I3GY Arachis hypogaea HOM05D000104 ORTHO05D008076 1.1e-19 100.9 72 65.3
BolC8t52793H Brassica oleracea HOM05D000084 ORTHO05D008076 1.1e-19 100.9 197 37.6
Oeu005602.1 Olea europaea HOM05D000104 ORTHO05D008076 1.5e-19 100.5 200 40.5
arahy.Tifrunner.gnm1.ann1.Y7U98Q Arachis hypogaea HOM05D000104 ORTHO05D008076 1.9e-19 100.1 72 65.3
Peaxi162Scf01415g00029 Petunia axillaris HOM05D000104 ORTHO05D008076 1.9e-19 100.1 198 37.4
Prupe.3G139100 Prunus persica HOM05D000104 ORTHO05D008076 1.9e-19 100.1 203 39.9
Gohir.D12G143000 Gossypium hirsutum HOM05D000104 ORTHO05D008076 2.5e-19 99.8 195 46.7
Nitab4.5_0001752g0060 Nicotiana tabacum HOM05D000104 ORTHO05D008076 2.5e-19 99.8 201 38.3
Ciclev10003508m.g Citrus clementina HOM05D000104 ORTHO05D008076 3.3e-19 99.4 71 67.6
QL08p039603 Quercus lobata HOM05D000104 ORTHO05D008076 4.3e-19 99.0 196 38.3
Hund01028 Selenicereus undatus HOM05D000104 ORTHO05D008076 4.3e-19 99.0 208 40.4
A09p68230 Brassica napus HOM05D000084 ORTHO05D008076 5.6e-19 98.6 194 38.1
BraA09t42158Z Brassica rapa HOM05D000084 ORTHO05D008076 5.6e-19 98.6 194 38.1
COL.COLO4_05945 Corchorus olitorius HOM05D000104 ORTHO05D008076 5.6e-19 98.6 199 42.2
Pp3c12_25750 Physcomitrium patens HOM05D000104 ORTHO05D008076 5.6e-19 98.6 78 61.5
Thecc.02G182200 Theobroma cacao HOM05D000104 ORTHO05D008076 5.6e-19 98.6 200 46.5
GSVIVG01020568001 Vitis vinifera HOM05D000104 ORTHO05D008076 5.6e-19 98.6 201 38.8
Nn1g06495 Nelumbo nucifera HOM05D000104 ORTHO05D008076 7.4e-19 98.2 199 37.2
Psat7g169040 Pisum sativum HOM05D000104 ORTHO05D008076 7.4e-19 98.2 203 45.3
Aa31LG1G8960 Aethionema arabicum HOM05D000104 ORTHO05D008076 1.3e-18 97.4 196 37.8
CAN.G209.36 Capsicum annuum HOM05D000104 ORTHO05D008076 1.3e-18 97.4 201 39.8
Potri.017G012400 Populus trichocarpa HOM05D000104 ORTHO05D008076 1.3e-18 97.4 204 36.8
DCAR_019177 Daucus carota HOM05D000104 ORTHO05D008076 1.6e-18 97.1 200 36.5
Sabra17G0010200 Salix brachista HOM05D000104 ORTHO05D008076 1.6e-18 97.1 203 37.9
Ca_18940_v3 Cicer arietinum L. HOM05D000104 ORTHO05D008076 2.1e-18 96.7 206 46.1
EL10Ac9g20791 Beta vulgaris HOM05D000104 ORTHO05D008076 2.8e-18 96.3 209 36.8
Actinidia11018 Actinidia chinensis HOM05D000104 ORTHO05D008076 3.7e-18 95.9 205 37.6
Gohir.A12G138700 Gossypium hirsutum HOM05D000104 ORTHO05D008076 3.7e-18 95.9 195 45.6
Aqoxy1G02377 Aquilegia oxysepala HOM05D000104 ORTHO05D008076 4.8e-18 95.5 199 37.7
ClCG02G017740 Citrullus lanatus HOM05D000104 ORTHO05D008076 4.8e-18 95.5 77 64.9
Manes.13G144908 Manihot esculenta HOM05D000104 ORTHO05D008076 4.8e-18 95.5 66 74.2
Phvul.011G120000 Phaseolus vulgaris HOM05D000104 ORTHO05D008076 4.8e-18 95.5 83 57.8
Atru.chr6.2900 Acer truncatum HOM05D000104 ORTHO05D008076 6.2e-18 95.1 71 69.0
Cc05_g07380 Coffea canephora HOM05D000104 ORTHO05D008076 8.1e-18 94.7 201 42.3
Dinv13396 Davidia involucrata HOM05D000104 ORTHO05D008076 1.1e-17 94.4 58 75.9
TPR.G29256 Trifolium pratense HOM05D000104 ORTHO05D008076 1.1e-17 94.4 202 44.1
CSS0045250 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D008076 1.4e-17 94.0 58 74.1
Glyma.12G115800 Glycine max HOM05D000104 ORTHO05D008076 1.4e-17 94.0 58 77.6
SalBow1G4063 Salvia bowleyana HOM05D000104 ORTHO05D008076 1.4e-17 94.0 200 39.0
Lj3g0003116 Lotus japonicus HOM05D000104 ORTHO05D008076 1.8e-17 93.6 58 75.9
Duzib052G0408 Durio zibethinus HOM05D000104 ORTHO05D008076 2.4e-17 93.2 198 38.9
Lalb_Chr01g0005161 Lupinus albus HOM05D000104 ORTHO05D008076 4.0e-17 92.4 199 34.7
Rhsim06G0139600 Rhododendron simsii HOM05D000104 ORTHO05D008076 4.0e-17 92.4 55 72.7
MELO3C013630.2 Cucumis melo HOM05D000104 ORTHO05D008076 5.3e-17 92.0 211 35.1
FvH4_6g26480 Fragaria vesca HOM05D000104 ORTHO05D008076 5.3e-17 92.0 55 74.5
FAN14G4359 Fragaria x ananassa HOM05D000104 ORTHO05D008076 5.3e-17 92.0 55 74.5
FAN05G3484 Fragaria x ananassa HOM05D000104 ORTHO05D008076 6.9e-17 91.7 194 37.1
Medtr4g078460 Medicago truncatula HOM05D000104 ORTHO05D008076 6.9e-17 91.7 58 75.9
Medtr4g078495 Medicago truncatula HOM05D000104 ORTHO05D008076 6.9e-17 91.7 58 75.9
CsaV3_6G012820 Cucumis sativus L. HOM05D000104 ORTHO05D008076 1.2e-16 90.9 204 37.7
Os05g0247900 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D008076 1.2e-16 90.9 57 70.2
RcHm_v2.0_Chr2g0127761 Rosa chinensis HOM05D000104 ORTHO05D008076 1.2e-16 90.9 201 36.8
Sed0011541 Sechium edule HOM05D000104 ORTHO05D008076 2.0e-16 90.1 204 37.7
Ah.01g004160 Amaranthus hybridus HOM05D000104 ORTHO05D008076 2.6e-16 89.7 196 39.8
SGA_v2.0_scaffold109G31119 Striga asiatica HOM05D000104 ORTHO05D008076 4.5e-16 89.0 196 37.8
unitig_62.g23165 Utricularia gibba HOM05D000104 ORTHO05D008076 5.8e-16 88.6 195 36.9
FAN02G3238 Fragaria x ananassa HOM05D000104 ORTHO05D008076 7.6e-16 88.2 194 35.6
HanXRQChr10g0284061 Helianthus annuus HOM05D000104 ORTHO05D008076 4.9e-15 85.5 55 72.7
ECA232G2294 Erigeron canadensis HOM05D000047 ORTHO05D000044 6.4e-15 85.1 58 70.7
TAR626G0345 Trochodendron aralioides HOM05D000104 ORTHO05D008076 1.4e-14 84.0 50 76.0
MSTRG.14347 Avicennia marina HOM05D000104 ORTHO05D008076 2.7e-13 79.7 201 38.8
SMO147G0241 Selaginella moellendorffii HOM05D000104 ORTHO05D008076 3.5e-13 79.3 57 66.7
RhsimUnG0145100 Rhododendron simsii HOM05D000104 ORTHO05D008076 1.8e-12 77.0 55 61.8
vmacro12325 Vaccinium macrocarpon HOM05D000104 ORTHO05D008076 1.8e-12 77.0 39 82.1
Migut.J00820 Erythranthe guttata HOM05D000104 ORTHO05D008076 2.3e-12 76.6 38 92.1
Mapoly0042s0047 Marchantia polymorpha HOM05D000104 ORTHO05D008076 2.3e-12 76.6 90 46.7
VMungo1127G2308 Vigna mungo HOM05D000104 ORTHO05D008076 3.3e-11 72.8 220 30.9
CBR_g8167 Chara braunii HOM05D000104 ORTHO05D008076 1.2e-08 64.3 38 71.1
SHI10389 Sapria himalayana HOM05D000104 ORTHO05D008076 2.0e-08 63.5 207 30.9
Nn1g00011 Nelumbo nucifera HOM05D000104 ORTHO05D008076 1.7e-07 60.5 28 92.9
MCO05G362 Micromonas commoda HOM05D000104 ORTHO05D008076 3.8e-07 59.3 46 54.3
HPP92_010208 Vanilla planifolia HOM05D000104 ORTHO05D008076 6.5e-07 58.5 29 86.2
MCO07G731 Micromonas commoda HOM05D000104 ORTHO05D006071 4.2e-06 55.8 58 39.7


User provided reference genes

Program Settings