Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_23671 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 1.6e-169 599.4 313 100.0
Glyma.03G252300 Glycine max HOM05D003193 ORTHO05D004924 1.4e-123 446.8 286 78.0
Lalb_Chr04g0261971 Lupinus albus HOM05D003193 ORTHO05D004924 1.8e-123 446.4 286 78.0
VMungo0540G1922 Vigna mungo HOM05D003193 ORTHO05D004924 3.0e-123 445.7 286 77.6
Medtr7g116425 Medicago truncatula HOM05D003193 ORTHO05D004924 3.3e-122 442.2 279 78.9
Glyma.19G249900 Glycine max HOM05D003193 ORTHO05D004924 5.7e-122 441.4 286 76.9
arahy.Tifrunner.gnm1.ann1.ZPSV32 Arachis hypogaea HOM05D003193 ORTHO05D004924 9.7e-122 440.7 286 76.9
Psat0s4268g0040 Pisum sativum HOM05D003193 ORTHO05D004924 9.7e-122 440.7 284 78.2
Lj1g0024446 Lotus japonicus HOM05D003193 ORTHO05D004924 2.8e-121 439.1 286 76.6
vmacro19974 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 2.8e-121 439.1 286 75.5
GSVIVG01026340001 Vitis vinifera HOM05D003193 ORTHO05D004924 3.7e-121 438.7 286 75.9
Rhsim05G0170000 Rhododendron simsii HOM05D003193 ORTHO05D004924 4.8e-121 438.3 286 75.2
arahy.Tifrunner.gnm1.ann1.9XF1RW Arachis hypogaea HOM05D003193 ORTHO05D004924 6.3e-121 438.0 286 76.9
ATR0787G173 Amborella trichopoda HOM05D003193 ORTHO05D004924 8.2e-121 437.6 286 76.6
Cc09_g03080 Coffea canephora HOM05D003193 ORTHO05D004924 8.2e-121 437.6 290 74.5
TAR365G0326 Trochodendron aralioides HOM05D003193 ORTHO05D004924 4.1e-120 435.3 285 75.4
Atru.chr2.1127 Acer truncatum HOM05D003193 ORTHO05D004924 5.3e-120 434.9 286 74.5
Haze_04475 Corylus avellana HOM05D003193 ORTHO05D004924 5.3e-120 434.9 286 76.2
Phvul.006G107000 Phaseolus vulgaris HOM05D003193 ORTHO05D004924 7.0e-120 434.5 279 77.1
TAR636G2059 Trochodendron aralioides HOM05D003193 ORTHO05D004924 7.0e-120 434.5 286 75.5
Sabra19G0034100 Salix brachista HOM05D003193 ORTHO05D004924 9.1e-120 434.1 286 76.2
Sed0015322 Sechium edule HOM05D003193 ORTHO05D004924 9.1e-120 434.1 286 75.9
Potri.019G024200 Populus trichocarpa HOM05D003193 ORTHO05D004924 1.5e-119 433.3 286 75.2
CSS0043374 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 2.0e-119 433.0 286 75.5
COL.COLO4_37867 Corchorus olitorius HOM05D003193 ORTHO05D004924 2.0e-119 433.0 286 74.5
TPR.G4710 Trifolium pratense HOM05D003193 ORTHO05D004924 2.0e-119 433.0 281 76.2
Manes.09G146200 Manihot esculenta HOM05D003193 ORTHO05D004924 3.4e-119 432.2 286 74.8
Duzib177G0185 Durio zibethinus HOM05D003193 ORTHO05D004924 4.5e-119 431.8 286 74.1
Ca_09471_v3 Cicer arietinum L. HOM05D003193 ORTHO05D004924 7.7e-119 431.0 286 75.2
DCAR_029994 Daucus carota HOM05D003193 ORTHO05D004924 1.7e-118 429.9 282 75.2
Solyc04g050510.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 2.2e-118 429.5 286 74.5
Sopen04g021290 Solanum pennellii HOM05D003193 ORTHO05D004924 2.2e-118 429.5 286 74.5
Dinv06951 Davidia involucrata HOM05D003193 ORTHO05D004924 2.9e-118 429.1 286 74.8
PGR004G2196 Punica granatum HOM05D003193 ORTHO05D004924 1.1e-117 427.2 286 74.5
TWI60G0900 Tripterygium wilfordii HOM05D003193 ORTHO05D004924 1.1e-117 427.2 286 73.4
Gohir.D11G253200 Gossypium hirsutum HOM05D003193 ORTHO05D004924 1.4e-117 426.8 286 73.4
Gohir.A11G243500 Gossypium hirsutum HOM05D003193 ORTHO05D004924 4.2e-117 425.2 286 73.4
Gorai.007G272000 Gossypium raimondii HOM05D003193 ORTHO05D004924 5.5e-117 424.9 286 73.1
Lsat_1_v5_gn_9_45981 Lactuca sativa HOM05D003193 ORTHO05D004924 7.2e-117 424.5 287 74.2
HPP92_001295 Vanilla planifolia HOM05D003193 ORTHO05D004924 7.2e-117 424.5 286 74.1
CiPaw.07G075200 Carya illinoinensis HOM05D003193 ORTHO05D004924 9.4e-117 424.1 286 74.5
MD12G1252000 Malus domestica HOM05D003193 ORTHO05D004924 9.4e-117 424.1 286 73.1
CSS0037513 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 2.1e-116 422.9 286 73.8
Hma1.2p1_0123F.1_g058180 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 2.1e-116 422.9 286 74.1
Hma1.2p1_0123F.1_g058190 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 2.1e-116 422.9 286 74.1
Mapoly0135s0025 Marchantia polymorpha HOM05D003193 ORTHO05D004924 1.0e-115 420.6 286 74.8
ECA232G1705 Erigeron canadensis HOM05D003193 ORTHO05D004924 1.8e-115 419.9 285 74.0
Nitab4.5_0000841g0120 Nicotiana tabacum HOM05D003193 ORTHO05D004924 3.9e-115 418.7 286 73.8
Peaxi162Scf00071g00269 Petunia axillaris HOM05D003193 ORTHO05D004924 5.2e-115 418.3 286 74.1
ClCG11G010250 Citrullus lanatus HOM05D003193 ORTHO05D004924 1.1e-114 417.2 286 74.5
CsaV3_2G010070 Cucumis sativus L. HOM05D003193 ORTHO05D004924 3.3e-114 415.6 286 74.1
QL03p032698 Quercus lobata HOM05D003193 ORTHO05D004924 3.3e-114 415.6 286 72.4
Nn1g03055 Nelumbo nucifera HOM05D003193 ORTHO05D004924 5.7e-114 414.8 286 72.0
HanXRQChr05g0145131 Helianthus annuus HOM05D003193 ORTHO05D004924 7.4e-114 414.5 282 74.1
RcHm_v2.0_Chr3g0449041 Rosa chinensis HOM05D003193 ORTHO05D004924 1.7e-113 413.3 286 71.3
Lj2C47T5 Lonicera japonica HOM05D003193 ORTHO05D004924 2.2e-113 412.9 286 73.4
Eucgr.H04206 Eucalyptus grandis HOM05D003193 ORTHO05D004924 4.8e-113 411.8 314 67.5
FvH4_6g01410 Fragaria vesca HOM05D003193 ORTHO05D004924 1.8e-112 409.8 286 71.0
FAN05G0534 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.8e-112 409.8 286 71.0
FAN05G3617 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.8e-112 409.8 286 71.0
FAN14G4461 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.8e-112 409.8 286 71.0
FAN14G5315 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.8e-112 409.8 286 71.0
Thecc.05G265800 Theobroma cacao HOM05D003193 ORTHO05D004924 4.1e-112 408.7 286 71.3
FAN02G3021 Fragaria x ananassa HOM05D003193 ORTHO05D004924 5.3e-112 408.3 286 70.6
THA.LOC104821587 Tarenaya hassleriana HOM05D003193 ORTHO05D004924 7.0e-112 407.9 283 72.4
Sc09g0001810 Simmondsia chinensis HOM05D003193 ORTHO05D004924 9.1e-112 407.5 279 72.8
CANSAT54G2238 Cannabis sativa HOM05D003193 ORTHO05D004924 4.5e-111 405.2 286 70.3
Ciclev10018428m.g Citrus clementina HOM05D003193 ORTHO05D004924 4.5e-111 405.2 279 71.7
AagrBONN_evm.TU.Sc2ySwM_344.2455 Anthoceros agrestis HOM05D003193 ORTHO05D004924 2.7e-108 396.0 286 70.6
Ah.02g118790 Amaranthus hybridus HOM05D003193 ORTHO05D004924 3.3e-106 389.0 295 68.1
CBR_g28040 Chara braunii HOM05D003193 ORTHO05D004924 5.3e-104 381.7 287 69.7
Nitab4.5_0002063g0040 Nicotiana tabacum HOM05D003193 ORTHO05D004924 7.0e-104 381.3 286 68.5
SalBow1G0653 Salvia bowleyana HOM05D003193 ORTHO05D004924 1.2e-103 380.6 286 69.6
AUR62000638 Chenopodium quinoa HOM05D003193 ORTHO05D004924 2.0e-103 379.8 286 67.8
AUR62006993 Chenopodium quinoa HOM05D003193 ORTHO05D004924 4.5e-103 378.6 286 67.8
MBI07_g08903_MAGBIO Magnolia biondii HOM05D003193 ORTHO05D004924 5.9e-103 378.3 318 62.9
Cpa.g.sc51.21 Carica papaya HOM05D003193 ORTHO05D004924 6.5e-102 374.8 286 66.1
SGA_v2.0_scaffold62G21472 Striga asiatica HOM05D003193 ORTHO05D004924 1.2e-100 370.5 294 65.6
Carub.0012s0016 Capsella rubella HOM05D003193 ORTHO05D004924 4.7e-100 368.6 279 67.4
SMO356G0295 Selaginella moellendorffii HOM05D003193 ORTHO05D004924 9.8e-98 360.9 286 66.1
Hund07170 Selenicereus undatus HOM05D003193 ORTHO05D004924 1.7e-97 360.1 279 65.2
Prupe.6G353600 Prunus persica HOM05D003193 ORTHO05D004924 7.0e-96 354.8 276 64.5
PSO764G0333 Papaver somniferum HOM05D003193 ORTHO05D004924 3.8e-94 349.0 225 74.7
Pp3c22_8910 Physcomitrium patens HOM05D003193 ORTHO05D004924 8.6e-94 347.8 240 72.1
PSO832G2952 Papaver somniferum HOM05D003193 ORTHO05D004924 4.2e-93 345.5 225 73.8
Aqoxy5G00090 Aquilegia oxysepala HOM05D003193 ORTHO05D004924 7.2e-93 344.7 224 75.9
CAN.G131.16 Capsicum annuum HOM05D003193 ORTHO05D004924 6.1e-92 341.7 239 73.6
EL10Ac4g09775 Beta vulgaris HOM05D003193 ORTHO05D004924 5.2e-91 338.6 278 62.2
Migut.F02049 Erythranthe guttata HOM05D003193 ORTHO05D004924 5.9e-87 325.1 224 71.9
SHI15636 Sapria himalayana HOM05D003193 ORTHO05D004924 1.7e-86 323.6 287 57.8
Thhalv10022486m.g Eutrema salsugineum HOM05D003193 ORTHO05D004924 4.3e-85 318.9 225 70.2
Aa31LG2G2030 Aethionema arabicum HOM05D003193 ORTHO05D004924 5.6e-85 318.5 221 71.5
AL2G19160 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 5.6e-85 318.5 222 71.2
Os03g0721200 Oryza sativa ssp. japonica HOM05D003193 ORTHO05D004924 1.6e-84 317.0 224 71.4
AT1G64790 Arabidopsis thaliana HOM05D003193 ORTHO05D004924 3.6e-84 315.8 222 70.7
SpUn0003_0310 Schrenkiella parvula HOM05D003193 ORTHO05D004924 3.6e-84 315.8 222 70.3
Actinidia06816 Actinidia chinensis HOM05D003193 ORTHO05D004924 4.7e-84 315.5 300 59.0
BcaC03g16020 Brassica carinata HOM05D003193 ORTHO05D004924 3.1e-83 312.8 222 68.9
A02p23930 Brassica napus HOM05D003193 ORTHO05D004924 3.1e-83 312.8 222 68.9
C02p37720 Brassica napus HOM05D003193 ORTHO05D004924 3.1e-83 312.8 222 68.9
BolC2t09791H Brassica oleracea HOM05D003193 ORTHO05D004924 3.1e-83 312.8 222 68.9
BraA02t07385Z Brassica rapa HOM05D003193 ORTHO05D004924 3.1e-83 312.8 222 68.9
BcaB05g23590 Brassica carinata HOM05D003193 ORTHO05D004924 1.5e-82 310.5 222 68.9
Zm00001eb208190 Zea mays HOM05D003193 ORTHO05D004924 3.4e-82 309.3 224 68.8
CARHR056140 Cardamine hirsuta HOM05D003193 ORTHO05D004924 7.5e-82 308.1 222 68.0
Zm00001eb055550 Zea mays HOM05D003193 ORTHO05D004924 3.2e-80 302.8 224 68.3
SalBow1G5750 Salvia bowleyana HOM05D003193 ORTHO05D004924 2.0e-74 283.5 176 83.5
unitig_37.g12282 Utricularia gibba HOM05D003193 ORTHO05D004924 3.2e-72 276.2 224 68.3
CDE09G0101 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 4.3e-69 265.8 286 51.4
CDE09G0882 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 3.5e-55 219.5 143 79.0
Cre01.g015600 Chlamydomonas reinhardtii HOM05D003193 ORTHO05D004924 2.2e-49 200.3 306 39.9
Actinidia03821 Actinidia chinensis HOM05D003193 ORTHO05D004924 4.2e-48 196.1 292 43.8
MCO11G232 Micromonas commoda HOM05D003193 ORTHO05D004924 2.1e-47 193.7 290 41.0
SalBow1G3637 Salvia bowleyana HOM05D003193 ORTHO05D004924 2.0e-42 177.2 112 71.4
SEGI_09842 Sequoiadendron giganteum HOM05D003193 ORTHO05D036451 1.5e-29 134.4 76 86.8
Lsat_1_v5_gn_5_100381 Lactuca sativa HOM05D003193 ORTHO05D036451 3.4e-26 123.2 83 66.3
PRCOL_00002743 Prasinoderma coloniale HOM05D003193 ORTHO05D004924 4.9e-25 119.4 314 30.6
Lsat_1_v5_gn_1_12580 Lactuca sativa HOM05D003193 ORTHO05D036451 8.2e-20 102.1 186 35.5
MD04G1233800 Malus domestica HOM05D003193 ORTHO05D004924 1.1e-16 91.7 238 33.2
Oeu055042.1 Olea europaea HOM05D003193 ORTHO05D004924 1.8e-11 74.3 44 79.5
CAN.G131.15 Capsicum annuum HOM05D003193 ORTHO05D004924 1.5e-10 71.2 44 77.3
arahy.Tifrunner.gnm1.ann1.V6B23X Arachis hypogaea HOM05D003193 ORTHO05D084303 1.8e-06 57.8 61 54.1
QL03p032673 Quercus lobata HOM05D003193 ORTHO05D337941 5.1e-06 56.2 47 61.7


User provided reference genes

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