Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 2.6e-240 835.1 462 100.0
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 1.6e-93 347.4 458 49.3
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 3.1e-92 343.2 456 48.5
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 1.0e-90 338.2 457 48.1
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 1.0e-90 338.2 457 48.1
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 1.7e-90 337.4 459 48.6
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 3.8e-90 336.3 463 46.9
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 1.9e-89 334.0 460 47.6
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 2.5e-89 333.6 463 47.9
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 7.2e-89 332.0 462 47.4
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 7.2e-89 332.0 457 49.0
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 9.4e-89 331.6 459 48.1
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.4e-87 327.8 459 46.8
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 2.3e-87 327.0 447 48.8
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 5.1e-87 325.9 459 46.0
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 1.5e-86 324.3 460 47.0
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 1.5e-86 324.3 457 46.8
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 2.0e-86 323.9 454 48.9
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 5.7e-86 322.4 458 47.2
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 9.7e-86 321.6 464 46.3
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 9.7e-86 321.6 460 46.7
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 9.7e-86 321.6 455 46.4
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 9.7e-86 321.6 456 47.4
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 1.3e-85 321.2 466 46.4
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 4.8e-85 319.3 375 51.7
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 1.4e-84 317.8 457 46.8
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 1.4e-84 317.8 459 46.8
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 1.8e-84 317.4 457 46.0
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 1.8e-84 317.4 476 45.2
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 3.1e-84 316.6 459 46.2
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 3.1e-84 316.6 461 46.0
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 5.3e-84 315.8 460 46.5
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 5.3e-84 315.8 456 46.5
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 6.9e-84 315.5 441 46.5
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 9.1e-84 315.1 461 45.6
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 9.1e-84 315.1 456 46.5
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 1.5e-83 314.3 437 47.4
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 2.6e-83 313.5 458 46.5
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 4.5e-83 312.8 456 46.1
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.2e-82 310.5 456 46.1
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 2.9e-82 310.1 451 46.1
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 5.0e-82 309.3 461 45.1
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 8.5e-82 308.5 456 47.1
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 8.5e-82 308.5 465 45.2
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 1.9e-81 307.4 447 45.9
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 1.9e-81 307.4 459 44.2
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 3.2e-81 306.6 454 45.4
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 3.2e-81 306.6 450 45.8
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 1.6e-80 304.3 473 44.4
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 3.6e-80 303.1 458 44.5
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 4.7e-80 302.8 463 44.9
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 6.1e-80 302.4 461 44.7
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 6.1e-80 302.4 458 45.9
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 7.9e-80 302.0 469 43.7
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 1.0e-79 301.6 459 44.9
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 1.0e-79 301.6 459 45.8
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 1.8e-79 300.8 469 44.6
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 2.3e-79 300.4 460 44.3
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 2.3e-79 300.4 460 44.3
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 5.2e-79 299.3 468 42.7
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 6.7e-79 298.9 458 43.9
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 8.8e-79 298.5 461 44.5
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 8.8e-79 298.5 461 44.3
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 8.8e-79 298.5 461 46.4
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 1.1e-78 298.1 459 44.4
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 2.6e-78 297.0 458 44.1
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 3.3e-78 296.6 458 43.9
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 3.3e-78 296.6 466 44.4
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 7.4e-78 295.4 460 43.7
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 2.2e-77 293.9 459 44.2
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 2.8e-77 293.5 455 45.1
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 2.8e-77 293.5 436 46.3
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 4.8e-77 292.7 463 44.3
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 1.4e-76 291.2 457 45.3
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 1.8e-76 290.8 459 44.0
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 7.0e-76 288.9 460 43.3
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 2.6e-75 287.0 457 43.1
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 4.5e-75 286.2 475 43.4
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 1.7e-74 284.3 466 42.5
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 5.0e-74 282.7 448 43.1
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 5.0e-74 282.7 448 43.1
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 5.0e-74 282.7 454 43.0
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 6.5e-74 282.3 465 42.2
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 8.5e-74 282.0 463 42.8
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 1.5e-73 281.2 457 42.0
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 1.9e-73 280.8 396 46.0
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 5.5e-73 279.3 461 42.3
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 7.2e-73 278.9 477 41.5
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.2e-72 278.1 461 41.9
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 2.7e-72 276.9 388 45.4
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 6.7e-71 272.3 462 42.9
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 1.2e-70 271.6 462 42.6
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 2.0e-70 270.8 462 42.4
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 3.3e-70 270.0 460 42.2
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 3.1e-68 263.5 470 41.1
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 2.0e-67 260.8 437 44.9
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.5e-67 259.6 404 45.0
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 1.9e-65 254.2 462 41.3
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 8.0e-64 248.8 372 45.2
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 3.0e-63 246.9 485 40.2
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 2.0e-62 244.2 475 39.4
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 7.5e-62 242.3 433 43.4
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 5.4e-60 236.1 332 46.7
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 1.6e-56 224.6 395 38.2
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 4.7e-56 223.0 379 41.4
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.0e-56 222.2 385 41.3
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 6.8e-55 219.2 373 44.5
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 8.8e-55 218.8 463 37.4
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 2.2e-53 214.2 452 38.3
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 1.8e-52 211.1 379 43.3
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.8e-47 192.6 405 37.3
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 6.8e-47 192.6 272 46.0
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 2.6e-46 190.7 266 46.2
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 3.5e-43 180.3 233 49.8
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 6.6e-42 176.0 474 34.0
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 5.2e-39 166.4 273 44.7
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 1.7e-34 151.4 470 32.1
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 2.3e-34 151.0 273 42.5
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 5.0e-34 149.8 243 41.6
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 5.6e-33 146.4 198 45.5
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 2.1e-32 144.4 273 41.4
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 5.2e-31 139.8 187 48.1
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 9.9e-30 135.6 194 44.3
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 1.3e-29 135.2 180 46.7
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 1.0e-26 125.6 270 40.0
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 2.8e-24 117.5 177 42.4
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 5.8e-22 109.8 252 39.3
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 2.4e-20 104.4 174 40.8
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.1e-20 103.6 191 37.2
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 5.6e-17 93.2 216 38.4
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 6.2e-16 89.7 140 40.0
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 4.9e-13 80.1 137 42.3
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 2.4e-12 77.8 67 59.7
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 5.4e-12 76.6 173 32.4
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 1.0e-10 72.4 107 44.9
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 2.3e-10 71.2 150 39.3
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 8.1e-08 62.8 58 56.9


User provided reference genes

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