Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_23541 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 1.5e-101 372.9 184 100.0
SEGI_03464 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 8.7e-46 187.6 201 56.2
SEGI_36735 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 2.0e-42 176.4 183 55.7
SEGI_36812 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 1.1e-37 160.6 191 52.4
SEGI_19811 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 2.8e-36 156.0 182 54.4
SEGI_22000 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 6.9e-35 151.4 169 55.0
SEGI_14851 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 9.0e-35 151.0 178 53.4
SEGI_34313 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 9.0e-35 151.0 183 51.4
SEGI_17170 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 3.8e-33 145.6 164 53.0
SEGI_09126 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 5.0e-33 145.2 178 51.7
SEGI_10108 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 9.7e-29 131.0 158 53.2
SEGI_07076 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 1.4e-27 127.1 176 50.0
SEGI_20974 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 5.0e-17 92.0 110 52.7
MBI01_g34424_MAGBIO Magnolia biondii HOM05D001667 ORTHO05D001508 1.6e-15 87.0 155 38.7
PGR004G2379 Punica granatum HOM05D001667 ORTHO05D001508 7.9e-15 84.7 152 38.8
Aqoxy2G01020 Aquilegia oxysepala HOM05D001667 ORTHO05D001508 3.0e-14 82.8 202 33.2
TAR623G1308 Trochodendron aralioides HOM05D001667 ORTHO05D001508 1.7e-12 77.0 148 38.5
TAR633G2309 Trochodendron aralioides HOM05D001667 ORTHO05D001508 1.7e-12 77.0 151 35.8
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 2.8e-12 76.3 140 35.7
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 1.1e-11 74.3 134 34.3
Nn6g34775 Nelumbo nucifera HOM05D001667 ORTHO05D001508 2.4e-11 73.2 147 34.7
SMO146G0238 Selaginella moellendorffii HOM05D003316 ORTHO05D003690 5.3e-11 72.0 241 28.6
SEGI_14096 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 7.0e-11 71.6 79 51.9
Aqoxy4G02696 Aquilegia oxysepala HOM05D001667 ORTHO05D001508 1.2e-10 70.9 145 35.2
Pp3c16_12300 Physcomitrium patens HOM05D013579 ORTHO05D001508 2.0e-10 70.1 94 41.5
Nn2g14254 Nelumbo nucifera HOM05D001590 ORTHO05D001508 3.5e-10 69.3 144 36.1
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 4.5e-10 68.9 123 32.5
AagrBONN_evm.TU.Sc2ySwM_228.4078 Anthoceros agrestis HOM05D013579 ORTHO05D015305 1.0e-09 67.8 79 44.3
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 1.3e-09 67.4 120 34.2
TAR636G2183 Trochodendron aralioides HOM05D001667 ORTHO05D001508 1.7e-09 67.0 149 36.2
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 2.9e-09 66.2 147 29.3
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 2.9e-09 66.2 140 34.3
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 3.8e-09 65.9 146 34.2
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 6.5e-09 65.1 138 33.3
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 6.5e-09 65.1 133 34.6
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 6.5e-09 65.1 122 33.6
Pp3c27_4970 Physcomitrium patens HOM05D013579 ORTHO05D004077 8.5e-09 64.7 88 38.6
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 1.1e-08 64.3 137 32.1
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.5e-08 63.9 141 31.2
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 1.5e-08 63.9 124 33.1
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 1.5e-08 63.9 118 33.9
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.9e-08 63.5 129 32.6
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 2.5e-08 63.2 156 28.8
CDE12G0589 Ceratophyllum demersum HOM05D001667 ORTHO05D001508 2.5e-08 63.2 143 31.5
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 2.5e-08 63.2 130 32.3
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.5e-08 63.2 119 32.8
Mapoly0029s0076 Marchantia polymorpha HOM05D013579 ORTHO05D015305 2.5e-08 63.2 78 44.9
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 2.5e-08 63.2 145 33.1
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 3.2e-08 62.8 124 32.3
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 3.2e-08 62.8 123 32.5
CDE04G1292 Ceratophyllum demersum HOM05D001667 ORTHO05D001508 3.2e-08 62.8 145 32.4
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 4.2e-08 62.4 138 31.2
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 7.2e-08 61.6 125 29.6
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 9.4e-08 61.2 124 33.9
Pp3c5_5250 Physcomitrium patens HOM05D013579 ORTHO05D015305 1.2e-07 60.8 99 39.4
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.2e-07 60.8 141 31.2
MSTRG.24593 Avicennia marina HOM05D002704 ORTHO05D002891 1.6e-07 60.5 130 33.8
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.6e-07 60.5 139 28.8
Pp3c14_19700 Physcomitrium patens HOM05D013579 ORTHO05D015305 1.6e-07 60.5 95 41.1
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 1.6e-07 60.5 121 32.2
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 1.6e-07 60.5 146 32.9
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 2.1e-07 60.1 123 30.9
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 2.1e-07 60.1 150 30.7
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 2.1e-07 60.1 143 30.1
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 2.7e-07 59.7 143 35.7
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 3.6e-07 59.3 156 29.5
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 3.6e-07 59.3 176 27.3
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 3.6e-07 59.3 138 30.4
Pp3c2_10100 Physcomitrium patens HOM05D013579 ORTHO05D003690 3.6e-07 59.3 96 38.5
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 4.7e-07 58.9 140 30.7
Pp3c17_15140 Physcomitrium patens HOM05D013579 ORTHO05D015305 4.7e-07 58.9 111 36.0
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 4.7e-07 58.9 140 30.7
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 6.1e-07 58.5 135 30.4
MD14G1034000 Malus domestica HOM05D001667 ORTHO05D001508 6.1e-07 58.5 111 39.6
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 6.1e-07 58.5 140 30.7
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 6.1e-07 58.5 145 30.3
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 6.1e-07 58.5 145 30.3
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 6.1e-07 58.5 154 30.5
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 8.0e-07 58.2 158 27.8
MD12G1033200 Malus domestica HOM05D001667 ORTHO05D001508 8.0e-07 58.2 93 40.9
Pp3c6_24870 Physcomitrium patens HOM05D013579 ORTHO05D015305 8.0e-07 58.2 89 39.3
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 8.0e-07 58.2 123 31.7
SMO118G0502 Selaginella moellendorffii HOM05D013579 ORTHO05D003690 8.0e-07 58.2 217 28.1
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 8.0e-07 58.2 167 31.1
BcaC09g48183 Brassica carinata HOM05D001667 ORTHO05D001508 1.0e-06 57.8 83 41.0
BolC1t05304H Brassica oleracea HOM05D001667 ORTHO05D001508 1.0e-06 57.8 83 41.0
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 1.0e-06 57.8 125 32.0
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 1.0e-06 57.8 118 32.2
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 1.4e-06 57.4 121 33.1
COL.COLO4_29621 Corchorus olitorius HOM05D001667 ORTHO05D001508 1.4e-06 57.4 59 49.2
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 1.4e-06 57.4 136 31.6
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.4e-06 57.4 150 30.0
Sed0009866 Sechium edule HOM05D001667 ORTHO05D001508 1.4e-06 57.4 60 51.7
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.4e-06 57.4 122 32.0
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.4e-06 57.4 125 32.8
BcaB04g21126 Brassica carinata HOM05D001667 ORTHO05D001508 1.8e-06 57.0 83 41.0
A03p37210 Brassica napus HOM05D001667 ORTHO05D001508 1.8e-06 57.0 83 44.6
BraA03t12880Z Brassica rapa HOM05D001667 ORTHO05D001508 1.8e-06 57.0 83 44.6
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 1.8e-06 57.0 118 31.4
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 1.8e-06 57.0 117 33.3
Pp3c1_28820 Physcomitrium patens HOM05D013579 ORTHO05D003690 1.8e-06 57.0 99 38.4
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 1.8e-06 57.0 123 30.9
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 1.8e-06 57.0 135 31.9
PGSC0003DMG400022120 Solanum tuberosum HOM05D003316 ORTHO05D003690 1.8e-06 57.0 189 29.1
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.8e-06 57.0 122 32.8
MSTRG.18781 Avicennia marina HOM05D001667 ORTHO05D001508 2.3e-06 56.6 88 39.8
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 2.3e-06 56.6 137 30.7
BcaC01g04100 Brassica carinata HOM05D001667 ORTHO05D001508 2.3e-06 56.6 83 44.6
BolC3t16768H Brassica oleracea HOM05D001667 ORTHO05D001508 2.3e-06 56.6 83 44.6
Nitab4.5_0000747g0040 Nicotiana tabacum HOM05D003316 ORTHO05D003690 2.3e-06 56.6 193 28.5
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 2.3e-06 56.6 149 30.9
BNapus_Darmor_BZH_scaffold_145p00050 Brassica napus HOM05D001667 ORTHO05D001508 3.0e-06 56.2 83 39.8
BraA01t04173Z Brassica rapa HOM05D001667 ORTHO05D001508 3.0e-06 56.2 83 39.8
CDE06G1436 Ceratophyllum demersum HOM05D001667 ORTHO05D001508 3.0e-06 56.2 140 32.1
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 3.0e-06 56.2 132 28.0
Medtr1g058120 Medicago truncatula HOM05D001667 ORTHO05D001508 3.0e-06 56.2 57 45.6
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 3.0e-06 56.2 122 30.3
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 4.0e-06 55.8 162 27.2
FAN05G3938 Fragaria x ananassa HOM05D001667 ORTHO05D001508 4.0e-06 55.8 56 50.0
PSO357G0625 Papaver somniferum HOM05D002704 ORTHO05D002891 4.0e-06 55.8 128 29.7
Prupe.7G099000 Prunus persica HOM05D001667 ORTHO05D001508 4.0e-06 55.8 61 49.2
Sp3g09840 Schrenkiella parvula HOM05D001667 ORTHO05D001508 4.0e-06 55.8 83 44.6
Sopen06g030400 Solanum pennellii HOM05D001667 ORTHO05D001508 4.0e-06 55.8 43 55.8
PGSC0003DMG400005933 Solanum tuberosum HOM05D001667 ORTHO05D001508 4.0e-06 55.8 43 55.8
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 4.0e-06 55.8 123 32.5
ATR0772G118 Amborella trichopoda HOM05D001667 ORTHO05D001508 5.2e-06 55.5 185 29.7
EL10Ac7g16821 Beta vulgaris HOM05D001667 ORTHO05D001508 5.2e-06 55.5 119 35.3
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 5.2e-06 55.5 134 29.1
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 5.2e-06 55.5 136 30.9
Medtr4g052230 Medicago truncatula HOM05D001667 ORTHO05D001508 5.2e-06 55.5 62 46.8
Peaxi162Scf00091g00074 Petunia axillaris HOM05D000010 ORTHO05D005236 5.2e-06 55.5 38 60.5
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 5.2e-06 55.5 123 31.7
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 5.2e-06 55.5 130 31.5
Sopen07g034730 Solanum pennellii HOM05D003316 ORTHO05D003690 5.2e-06 55.5 176 30.1
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 5.2e-06 55.5 138 27.5
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 6.7e-06 55.1 172 26.2
Aqoxy2G04081 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 6.7e-06 55.1 130 30.8
Aqoxy6G02333 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 6.7e-06 55.1 130 30.8
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 6.7e-06 55.1 149 29.5
Thhalv10021790m.g Eutrema salsugineum HOM05D001667 ORTHO05D001508 6.7e-06 55.1 83 43.4
Gohir.D09G097200 Gossypium hirsutum HOM05D001667 ORTHO05D001508 6.7e-06 55.1 50 52.0
Gorai.006G113900 Gossypium raimondii HOM05D001667 ORTHO05D001508 6.7e-06 55.1 50 52.0
Sed0022322 Sechium edule HOM05D001667 ORTHO05D001508 6.7e-06 55.1 60 51.7
arahy.Tifrunner.gnm1.ann1.8QQ9KG Arachis hypogaea HOM05D001667 ORTHO05D001508 8.8e-06 54.7 60 50.0
arahy.Tifrunner.gnm1.ann1.DY9K7Z Arachis hypogaea HOM05D001667 ORTHO05D001508 8.8e-06 54.7 60 50.0
BcaB06g25603 Brassica carinata HOM05D001667 ORTHO05D001508 8.8e-06 54.7 83 43.4
MELO3C009512.2 Cucumis melo HOM05D001667 ORTHO05D001508 8.8e-06 54.7 60 48.3
FvH4_6g19800 Fragaria vesca HOM05D001667 ORTHO05D001508 8.8e-06 54.7 56 50.0
FAN02G0800 Fragaria x ananassa HOM05D001667 ORTHO05D001508 8.8e-06 54.7 56 50.0
FAN05G2851 Fragaria x ananassa HOM05D001667 ORTHO05D001508 8.8e-06 54.7 56 50.0
FAN09G1589 Fragaria x ananassa HOM05D001667 ORTHO05D001508 8.8e-06 54.7 56 50.0
Nitab4.5_0000380g0240 Nicotiana tabacum HOM05D001667 ORTHO05D001508 8.8e-06 54.7 42 54.8
Nitab4.5_0002706g0040 Nicotiana tabacum HOM05D001667 ORTHO05D001508 8.8e-06 54.7 93 39.8
RcHm_v2.0_Chr3g0475171 Rosa chinensis HOM05D001667 ORTHO05D001508 8.8e-06 54.7 95 36.8
Sabra02G0176600 Salix brachista HOM05D002704 ORTHO05D002891 8.8e-06 54.7 160 28.8
HPP92_027467 Vanilla planifolia HOM05D001667 ORTHO05D001508 8.8e-06 54.7 37 56.8


User provided reference genes

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