Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_23400 Sequoiadendron giganteum HOM05D000290 ORTHO05D008298 4.0e-63 244.6 122 100.0
Nn8g40890 Nelumbo nucifera HOM05D000290 ORTHO05D008298 4.0e-23 111.7 91 62.6
TAR383G0121 Trochodendron aralioides HOM05D000290 ORTHO05D008298 2.2e-21 105.9 95 56.8
HPP92_021994 Vanilla planifolia HOM05D000290 ORTHO05D008298 3.8e-21 105.1 101 54.5
AUR62037695 Chenopodium quinoa HOM05D000290 ORTHO05D008298 1.1e-20 103.6 105 53.3
Aa31LG11G4140 Aethionema arabicum HOM05D000290 ORTHO05D008298 1.4e-20 103.2 77 64.9
AUR62020309 Chenopodium quinoa HOM05D000290 ORTHO05D008298 1.4e-20 103.2 105 53.3
PSO170G1117 Papaver somniferum HOM05D000290 ORTHO05D008298 1.4e-20 103.2 78 60.3
Thhalv10003765m.g Eutrema salsugineum HOM05D000290 ORTHO05D008298 1.9e-20 102.8 77 64.9
MBI16_g09338_MAGBIO Magnolia biondii HOM05D000290 ORTHO05D008298 1.9e-20 102.8 94 59.6
Sc23g0006290 Simmondsia chinensis HOM05D000290 ORTHO05D008298 1.9e-20 102.8 77 66.2
A02p39990 Brassica napus HOM05D000290 ORTHO05D008298 3.2e-20 102.1 101 53.5
BolC2t12046H Brassica oleracea HOM05D000290 ORTHO05D008298 3.2e-20 102.1 107 53.3
PSO063G1469 Papaver somniferum HOM05D000290 ORTHO05D008298 4.2e-20 101.7 77 61.0
AT5G24970 Arabidopsis thaliana HOM05D000290 ORTHO05D008298 5.4e-20 101.3 112 50.0
EL10Ac2g02437 Beta vulgaris HOM05D000290 ORTHO05D008298 5.4e-20 101.3 102 51.0
C02p59880 Brassica napus HOM05D000290 ORTHO05D008298 5.4e-20 101.3 105 51.4
MELO3C011316.2 Cucumis melo HOM05D000290 ORTHO05D008298 5.4e-20 101.3 93 57.0
AL6G36630 Arabidopsis lyrata HOM05D000290 ORTHO05D008298 7.1e-20 100.9 88 60.2
BraA02t08962Z Brassica rapa HOM05D000290 ORTHO05D008298 9.3e-20 100.5 101 53.5
Glyma.04G059100 Glycine max HOM05D000290 ORTHO05D008298 9.3e-20 100.5 101 54.5
Glyma.06G059800 Glycine max HOM05D000290 ORTHO05D008298 9.3e-20 100.5 111 51.4
Rhsim07G0167800 Rhododendron simsii HOM05D000290 ORTHO05D008298 9.3e-20 100.5 93 55.9
RcHm_v2.0_Chr6g0299071 Rosa chinensis HOM05D000290 ORTHO05D008298 9.3e-20 100.5 88 60.2
Sp2g22500 Schrenkiella parvula HOM05D000290 ORTHO05D008298 9.3e-20 100.5 77 63.6
Aqoxy7G02929 Aquilegia oxysepala HOM05D000290 ORTHO05D008298 2.1e-19 99.4 77 61.0
A06p35730 Brassica napus HOM05D000290 ORTHO05D008298 2.1e-19 99.4 89 57.3
C07p42810 Brassica napus HOM05D000290 ORTHO05D008298 2.1e-19 99.4 89 57.3
BolC7t44809H Brassica oleracea HOM05D000290 ORTHO05D008298 2.1e-19 99.4 88 58.0
BraA06t26497Z Brassica rapa HOM05D000290 ORTHO05D008298 2.1e-19 99.4 88 58.0
Sed0026921 Sechium edule HOM05D000290 ORTHO05D008298 2.1e-19 99.4 92 56.5
THA.LOC104803329 Tarenaya hassleriana HOM05D000290 ORTHO05D008298 2.1e-19 99.4 94 56.4
Ah.12g060370 Amaranthus hybridus HOM05D000290 ORTHO05D008298 2.7e-19 99.0 92 55.4
Gohir.A06G104000 Gossypium hirsutum HOM05D000290 ORTHO05D008298 2.7e-19 99.0 87 58.6
VMungo1309G1149 Vigna mungo HOM05D000290 ORTHO05D008298 2.7e-19 99.0 120 47.5
FAN15G2489 Fragaria x ananassa HOM05D000290 ORTHO05D008298 3.5e-19 98.6 77 63.6
FAN27G0560 Fragaria x ananassa HOM05D000290 ORTHO05D008298 3.5e-19 98.6 77 63.6
CsaV3_2G032630 Cucumis sativus L. HOM05D000290 ORTHO05D008298 4.6e-19 98.2 93 55.9
Gohir.D05G064700 Gossypium hirsutum HOM05D000290 ORTHO05D008298 4.6e-19 98.2 91 56.0
Actinidia14143 Actinidia chinensis HOM05D000290 ORTHO05D008298 6.0e-19 97.8 87 58.6
Carub.0006s2283 Capsella rubella HOM05D000290 ORTHO05D008298 6.0e-19 97.8 77 63.6
Ciclev10010214m.g Citrus clementina HOM05D000290 ORTHO05D008298 1.0e-18 97.1 96 52.1
MD08G1050200 Malus domestica HOM05D000290 ORTHO05D008298 1.0e-18 97.1 116 48.3
MD15G1044600 Malus domestica HOM05D000290 ORTHO05D008298 1.0e-18 97.1 91 57.1
CARHR188460 Cardamine hirsuta HOM05D000290 ORTHO05D008298 1.3e-18 96.7 77 62.3
Gohir.A05G062200 Gossypium hirsutum HOM05D000290 ORTHO05D008298 1.3e-18 96.7 89 56.2
Thecc.09G011600 Theobroma cacao HOM05D000290 ORTHO05D008298 1.3e-18 96.7 76 61.8
Cfa013004 Carpinus fangiana HOM05D000290 ORTHO05D008298 1.7e-18 96.3 78 65.4
Haze_21366 Corylus avellana HOM05D000290 ORTHO05D008298 1.7e-18 96.3 124 51.6
CANSAT25G2474 Cannabis sativa HOM05D000290 ORTHO05D008298 2.3e-18 95.9 95 53.7
Gorai.009G065400 Gossypium raimondii HOM05D000290 ORTHO05D008298 2.3e-18 95.9 91 54.9
CiPaw.07G233600 Carya illinoinensis HOM05D000290 ORTHO05D008298 3.0e-18 95.5 87 59.8
SHI21097 Sapria himalayana HOM05D000290 ORTHO05D008298 3.0e-18 95.5 77 63.6
GSVIVG01036033001 Vitis vinifera HOM05D000290 ORTHO05D008298 3.0e-18 95.5 77 59.7
arahy.Tifrunner.gnm1.ann1.M4CDZT Arachis hypogaea HOM05D000290 ORTHO05D008298 3.9e-18 95.1 78 57.7
arahy.Tifrunner.gnm1.ann1.XGVI2Q Arachis hypogaea HOM05D000290 ORTHO05D008298 3.9e-18 95.1 78 57.7
Duzib168G0098 Durio zibethinus HOM05D000290 ORTHO05D008298 3.9e-18 95.1 91 53.8
Haze_21360 Corylus avellana HOM05D000290 ORTHO05D008298 5.1e-18 94.7 78 65.4
ClCG08G013850 Citrullus lanatus HOM05D000290 ORTHO05D008298 6.6e-18 94.4 94 53.2
Gohir.D06G105800 Gossypium hirsutum HOM05D000290 ORTHO05D008298 8.7e-18 94.0 87 56.3
Gorai.010G120400 Gossypium raimondii HOM05D000290 ORTHO05D008298 8.7e-18 94.0 87 56.3
TWI63G1288 Tripterygium wilfordii HOM05D000290 ORTHO05D008298 1.1e-17 93.6 92 53.3
PGR044G1628 Punica granatum HOM05D000290 ORTHO05D008298 1.5e-17 93.2 77 61.0
COL.COLO4_18991 Corchorus olitorius HOM05D000290 ORTHO05D008298 1.9e-17 92.8 117 47.0
Lj7C741G3 Lonicera japonica HOM05D000290 ORTHO05D008298 1.9e-17 92.8 84 59.5
Eucgr.C04023 Eucalyptus grandis HOM05D000290 ORTHO05D008298 2.5e-17 92.4 92 56.5
Phvul.009G085500 Phaseolus vulgaris HOM05D000290 ORTHO05D008298 2.5e-17 92.4 120 45.0
ATR0580G105 Amborella trichopoda HOM05D000290 ORTHO05D008298 4.3e-17 91.7 85 55.3
SGA_v2.0_scaffold4G02159 Striga asiatica HOM05D000290 ORTHO05D008298 4.3e-17 91.7 92 54.3
TPR.G1883 Trifolium pratense HOM05D000290 ORTHO05D008298 4.3e-17 91.7 77 58.4
Atru.BG.5.p Acer truncatum HOM05D000290 ORTHO05D008298 5.6e-17 91.3 78 60.3
Migut.E01437 Erythranthe guttata HOM05D000290 ORTHO05D008298 5.6e-17 91.3 91 56.0
Nitab4.5_0000341g0060 Nicotiana tabacum HOM05D000290 ORTHO05D008298 5.6e-17 91.3 84 59.5
DCAR_024369 Daucus carota HOM05D000290 ORTHO05D008298 7.3e-17 90.9 78 59.0
Peaxi162Scf00288g00514 Petunia axillaris HOM05D000290 ORTHO05D008298 7.3e-17 90.9 101 53.5
unitig_46.g18220 Utricularia gibba HOM05D000290 ORTHO05D008298 7.3e-17 90.9 96 51.0
Nitab4.5_0000502g0240 Nicotiana tabacum HOM05D000290 ORTHO05D008298 9.6e-17 90.5 120 46.7
Lalb_Chr11g0063471 Lupinus albus HOM05D000290 ORTHO05D008298 1.3e-16 90.1 77 57.1
Potri.018G014000 Populus trichocarpa HOM05D000290 ORTHO05D008298 1.6e-16 89.7 106 52.8
Cc00_g02670 Coffea canephora HOM05D000290 ORTHO05D008298 2.1e-16 89.4 94 50.0
Solyc08g068920.4 Solanum lycopersicum HOM05D000290 ORTHO05D008298 2.8e-16 89.0 119 45.4
Sopen08g022600 Solanum pennellii HOM05D000290 ORTHO05D008298 2.8e-16 89.0 119 45.4
CAN.G273.7 Capsicum annuum HOM05D000290 ORTHO05D008298 3.6e-16 88.6 120 45.0
Medtr3g105760 Medicago truncatula HOM05D000290 ORTHO05D008298 3.6e-16 88.6 78 53.8
Sabra18G0017700 Salix brachista HOM05D000290 ORTHO05D008298 3.6e-16 88.6 107 52.3
QL02p017823 Quercus lobata HOM05D000290 ORTHO05D008298 1.4e-15 86.7 88 59.1
QL02p017911 Quercus lobata HOM05D000290 ORTHO05D008298 1.4e-15 86.7 88 59.1
Oeu006853.1 Olea europaea HOM05D000290 ORTHO05D008298 1.8e-15 86.3 94 50.0
Lsat_1_v5_gn_3_23500 Lactuca sativa HOM05D000290 ORTHO05D008298 3.1e-15 85.5 78 59.0
Os07g0459200 Oryza sativa ssp. japonica HOM05D000290 ORTHO05D008298 5.3e-15 84.7 77 54.5
HanXRQChr17g0537191 Helianthus annuus HOM05D000290 ORTHO05D008298 1.2e-14 83.6 77 57.1
SalBow8G0275 Salvia bowleyana HOM05D000290 ORTHO05D008298 2.6e-14 82.4 77 54.5
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 9.9e-14 80.5 94 47.9
Prupe.1G398500 Prunus persica HOM05D000290 ORTHO05D008298 1.3e-13 80.1 84 51.2
FvH4_2g41400 Fragaria vesca HOM05D000290 ORTHO05D008298 3.5e-11 72.0 58 62.1
Ca_15791_v3 Cicer arietinum L. HOM05D000290 ORTHO05D008298 6.7e-10 67.8 60 55.0
Duzib187G1815 Durio zibethinus HOM05D000290 ORTHO05D008298 7.4e-09 64.3 59 57.6
vmacro05114 Vaccinium macrocarpon HOM05D000290 ORTHO05D008298 8.1e-08 60.8 57 57.9


User provided reference genes

Program Settings