Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 0.0e+00 1209.1 775 100.0
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 2.4e-113 414.1 715 39.4
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 2.4e-113 414.1 715 42.1
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 2.7e-112 410.6 724 43.4
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 5.0e-111 406.4 725 45.4
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 6.3e-106 389.4 728 42.9
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 5.4e-105 386.3 723 42.5
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 2.7e-104 384.0 709 45.1
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 5.9e-104 382.9 720 40.4
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 5.0e-103 379.8 723 40.5
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 9.5e-102 375.6 717 38.1
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 4.4e-99 366.7 723 43.0
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 2.2e-98 364.4 728 39.0
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 2.2e-98 364.4 716 39.0
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 3.0e-95 354.0 716 40.1
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 1.9e-94 351.3 718 42.2
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 1.4e-92 345.1 650 36.5
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 6.8e-92 342.8 737 37.7
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 2.6e-91 340.9 728 37.8
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 4.4e-91 340.1 658 35.9
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 6.4e-90 336.3 715 39.6
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 1.6e-88 331.6 716 38.7
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 7.8e-88 329.3 719 35.2
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 1.0e-87 328.9 723 37.2
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 1.7e-87 328.2 720 36.4
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 3.0e-87 327.4 723 38.9
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 2.5e-86 324.3 703 36.4
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 9.5e-86 322.4 737 33.9
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 2.8e-85 320.9 754 35.0
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 3.6e-85 320.5 717 38.4
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 4.7e-85 320.1 739 37.9
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 1.1e-84 318.9 700 39.9
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 6.8e-84 316.2 596 39.3
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 6.8e-84 316.2 609 45.2
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 1.2e-83 315.5 601 45.9
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 2.6e-83 314.3 682 41.6
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 7.6e-83 312.8 728 40.2
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 9.9e-83 312.4 746 37.0
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 2.9e-82 310.8 722 43.5
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 3.7e-82 310.5 619 42.8
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 3.7e-82 310.5 717 38.6
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 3.7e-82 310.5 609 45.5
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 1.1e-81 308.9 741 36.8
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 1.9e-81 308.1 744 36.3
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 1.3e-79 302.0 645 35.5
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 2.3e-79 301.2 705 35.2
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 5.1e-79 300.1 709 37.9
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 6.6e-79 299.7 717 35.7
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 8.6e-79 299.3 712 41.9
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 2.5e-78 297.7 716 39.9
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 5.6e-78 296.6 760 39.9
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 2.1e-77 294.7 717 38.6
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 4.7e-77 293.5 724 36.6
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 8.1e-77 292.7 763 36.3
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 1.4e-76 292.0 745 41.6
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 3.1e-76 290.8 652 40.6
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 6.8e-76 289.7 500 45.2
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 4.9e-74 283.5 733 37.4
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 1.4e-73 282.0 705 34.2
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 9.3e-73 279.3 743 37.7
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 4.6e-72 276.9 747 34.1
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 6.0e-72 276.6 716 33.9
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 1.0e-71 275.8 749 33.8
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 1.7e-71 275.0 723 34.9
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 1.1e-70 272.3 703 37.7
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 1.1e-70 272.3 739 36.7
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 5.6e-70 270.0 714 38.2
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 7.3e-70 269.6 667 33.4
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 9.6e-70 269.2 635 38.4
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 2.8e-69 267.7 634 37.5
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 2.8e-69 267.7 713 37.6
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 3.6e-69 267.3 625 46.9
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 1.4e-68 265.4 719 35.5
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 6.9e-68 263.1 728 38.7
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 9.0e-68 262.7 734 37.1
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.5e-67 261.9 718 40.4
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 1.5e-67 261.9 714 40.6
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.0e-67 261.5 657 40.8
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 5.8e-67 260.0 717 40.2
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 7.6e-67 259.6 635 42.0
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 1.7e-66 258.5 463 40.4
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 2.9e-66 257.7 631 40.9
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 1.9e-65 255.0 746 38.1
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 2.4e-65 254.6 713 33.8
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 4.2e-65 253.8 710 41.5
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 2.1e-64 251.5 587 37.3
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 7.9e-64 249.6 725 32.7
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 2.3e-63 248.1 714 40.3
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 3.0e-63 247.7 678 37.0
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 7.3e-62 243.0 636 36.6
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 8.1e-61 239.6 609 38.9
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 3.1e-60 237.7 635 36.2
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 5.3e-60 236.9 713 33.7
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.2e-59 235.7 623 38.8
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 9.9e-59 232.6 605 41.2
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 4.9e-58 230.3 713 36.0
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 1.6e-56 225.3 714 35.6
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 2.5e-54 218.0 506 39.1
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 4.3e-54 217.2 709 30.3
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.0e-50 206.1 461 39.3
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 8.4e-50 203.0 625 29.9
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 1.1e-49 202.6 708 38.3
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 1.4e-49 202.2 705 35.7
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 3.2e-49 201.1 480 38.5
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 1.2e-48 199.1 635 40.3
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 2.1e-48 198.4 710 37.9
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 6.0e-48 196.8 359 39.8
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 8.7e-47 193.0 708 38.8
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 3.3e-46 191.0 655 37.3
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 7.4e-46 189.9 708 37.9
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 2.4e-44 184.9 588 40.1
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 5.3e-44 183.7 708 33.6
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.9e-42 177.9 605 34.0
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 2.7e-40 171.4 468 36.3
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 5.9e-35 153.7 279 45.5
Dinv27342 Davidia involucrata HOM05D005724 ORTHO05D006636 1.9e-33 148.7 326 37.7
AagrBONN_evm.TU.Sc2ySwM_344.5238 Anthoceros agrestis HOM05D005724 ORTHO05D006636 1.4e-31 142.5 606 33.0
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 3.9e-31 141.0 665 28.1
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 2.5e-30 138.3 227 43.2
Peaxi162Scf00916g00115 Petunia axillaris HOM05D005724 ORTHO05D006636 5.7e-30 137.1 380 38.9
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.4e-28 132.5 263 37.6
Cpa.g.sc48.98 Carica papaya HOM05D005724 ORTHO05D006636 3.3e-22 111.3 243 37.9
Psat1g166960 Pisum sativum HOM05D005724 ORTHO05D006636 7.4e-22 110.2 318 30.5
MSTRG.22873 Avicennia marina HOM05D005724 ORTHO05D006636 2.0e-19 102.1 170 38.2
MD04G1246400 Malus domestica HOM05D005724 ORTHO05D006636 2.5e-17 95.1 97 53.6
Cfa025790 Carpinus fangiana HOM05D005724 ORTHO05D006636 3.6e-16 91.3 643 28.0
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 1.1e-14 86.3 117 42.7
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 4.4e-14 84.3 93 49.5
Nitab4.5_0005621g0090 Nicotiana tabacum HOM05D005724 ORTHO05D006636 7.2e-09 67.0 95 45.3
MELO3C017820.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.6e-08 65.9 97 49.5
MELO3C003738.2 Cucumis melo HOM05D005724 ORTHO05D006636 6.1e-08 63.9 95 44.2
MD04G1246500 Malus domestica HOM05D005724 ORTHO05D006636 1.4e-07 62.8 146 36.3
PSO339G2657 Papaver somniferum HOM05D005724 ORTHO05D006636 4.0e-07 61.2 167 37.1
AagrBONN_evm.TU.Sc2ySwM_228.4909 Anthoceros agrestis HOM05D005724 ORTHO05D006636 1.5e-06 59.3 65 50.8


User provided reference genes

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