Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_23209 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 1.0e-171 606.7 312 100.0
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 2.1e-28 130.6 284 35.9
MBI06_g35146_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 3.7e-28 129.8 275 37.8
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 4.0e-27 126.3 298 34.6
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 8.4e-25 118.6 298 34.6
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 2.4e-24 117.1 286 36.4
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 4.2e-24 116.3 286 35.0
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 7.1e-24 115.5 319 33.2
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 1.2e-23 114.8 319 32.9
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 1.6e-23 114.4 286 35.3
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 2.7e-23 113.6 288 34.4
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 4.6e-23 112.8 283 35.7
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 7.9e-23 112.1 272 37.5
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 7.9e-23 112.1 286 35.3
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 7.9e-23 112.1 278 37.1
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 7.9e-23 112.1 302 33.8
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 1.0e-22 111.7 285 33.7
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.8e-22 110.9 272 34.9
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 3.0e-22 110.2 308 33.8
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 3.9e-22 109.8 319 32.6
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 5.1e-22 109.4 273 36.6
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 6.7e-22 109.0 275 34.2
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 6.7e-22 109.0 247 37.2
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 6.7e-22 109.0 272 36.0
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 8.7e-22 108.6 308 33.8
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 8.7e-22 108.6 241 37.3
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 1.1e-21 108.2 271 33.9
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 1.5e-21 107.8 249 35.7
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 1.5e-21 107.8 298 35.2
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 1.5e-21 107.8 264 35.6
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 1.9e-21 107.5 247 36.8
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 2.5e-21 107.1 296 33.1
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 2.5e-21 107.1 272 34.9
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 2.5e-21 107.1 278 35.3
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 2.5e-21 107.1 275 34.2
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 3.3e-21 106.7 295 32.5
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 3.3e-21 106.7 298 32.9
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 3.3e-21 106.7 272 35.3
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 4.3e-21 106.3 301 33.2
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 4.3e-21 106.3 287 34.5
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 7.4e-21 105.5 247 36.4
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 9.6e-21 105.1 272 35.3
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 1.6e-20 104.4 293 33.8
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 2.1e-20 104.0 276 33.7
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 2.8e-20 103.6 276 35.1
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 3.7e-20 103.2 277 35.0
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 3.7e-20 103.2 276 35.1
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 3.7e-20 103.2 277 35.0
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 3.7e-20 103.2 307 31.3
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 3.7e-20 103.2 285 32.3
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 4.8e-20 102.8 270 34.1
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 4.8e-20 102.8 274 35.4
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 4.8e-20 102.8 296 33.1
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 6.2e-20 102.4 284 35.2
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 8.2e-20 102.1 281 34.2
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 8.2e-20 102.1 252 36.5
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 8.2e-20 102.1 274 35.8
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 8.2e-20 102.1 264 34.1
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 8.2e-20 102.1 301 33.2
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.1e-19 101.7 297 32.7
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 1.1e-19 101.7 274 33.9
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 1.4e-19 101.3 281 34.5
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 1.4e-19 101.3 265 35.5
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 1.8e-19 100.9 270 34.8
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 2.4e-19 100.5 259 36.3
ATR0824G011 Amborella trichopoda HOM05D003681 ORTHO05D004703 3.1e-19 100.1 189 37.0
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 3.1e-19 100.1 295 31.5
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 3.1e-19 100.1 295 31.5
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 3.1e-19 100.1 270 34.4
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 5.3e-19 99.4 273 34.1
MELO3C014854.2 Cucumis melo HOM05D003681 ORTHO05D004703 5.3e-19 99.4 275 33.8
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.5e-18 97.8 273 33.7
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 1.5e-18 97.8 274 33.6
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 2.6e-18 97.1 270 34.1
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 2.6e-18 97.1 284 32.4
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 4.5e-18 96.3 239 34.3
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 5.8e-18 95.9 259 35.1
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 7.6e-18 95.5 266 35.3
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 1.3e-17 94.7 270 31.9
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 2.2e-17 94.0 272 33.5
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 2.9e-17 93.6 297 31.6
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 2.9e-17 93.6 263 34.6
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 6.5e-17 92.4 256 34.8
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 6.5e-17 92.4 303 30.7
Mapoly0032s0042 Marchantia polymorpha HOM05D003681 ORTHO05D004703 8.4e-17 92.0 260 33.5
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 1.1e-16 91.7 275 32.4
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 1.4e-16 91.3 271 32.1
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 2.5e-16 90.5 252 35.7
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 3.2e-16 90.1 300 29.0
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 3.2e-16 90.1 290 32.4
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 3.2e-16 90.1 280 31.8
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 4.2e-16 89.7 282 31.2
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 4.2e-16 89.7 290 32.8
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 7.1e-16 89.0 268 34.7
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.2e-15 88.2 283 31.4
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 1.2e-15 88.2 258 33.3
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 1.6e-15 87.8 252 32.9
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 2.1e-15 87.4 288 31.9
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 2.7e-15 87.0 298 31.9
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 2.7e-15 87.0 286 32.9
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 4.6e-15 86.3 254 31.1
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 7.9e-15 85.5 242 34.3
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 1.0e-14 85.1 266 32.3
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 2.3e-14 84.0 287 32.8
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 5.1e-14 82.8 287 32.4
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 5.1e-14 82.8 270 32.6
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 6.7e-14 82.4 233 36.1
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 1.5e-13 81.3 254 31.5
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 1.9e-13 80.9 252 32.1
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 1.9e-13 80.9 255 30.2
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 2.5e-13 80.5 262 31.3
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 2.5e-13 80.5 271 32.1
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 2.5e-13 80.5 254 33.9
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 2.5e-13 80.5 261 33.0
CSS0007013 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 4.3e-13 79.7 280 30.4
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 7.4e-13 79.0 273 31.5
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 7.4e-13 79.0 253 33.6
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 7.4e-13 79.0 253 33.6
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 9.7e-13 78.6 270 31.5
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 1.3e-12 78.2 229 34.1
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 2.2e-12 77.4 254 33.5
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 2.8e-12 77.0 253 34.4
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 3.7e-12 76.6 243 31.7
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 6.3e-12 75.9 253 34.0
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 6.3e-12 75.9 272 33.1
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 1.8e-11 74.3 282 30.9
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 2.4e-11 73.9 300 29.0
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 3.1e-11 73.6 278 31.3
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 5.3e-11 72.8 285 29.1
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 6.9e-11 72.4 256 32.4
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 6.9e-11 72.4 274 30.7
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 2.0e-10 70.9 255 28.6
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 4.5e-10 69.7 294 28.6
Zm00001eb235200 Zea mays HOM05D003681 ORTHO05D004703 7.6e-10 68.9 270 28.5
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 5.0e-09 66.2 260 29.6
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 5.0e-09 66.2 260 29.6
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 5.0e-09 66.2 269 29.0
DCAR_011288 Daucus carota HOM05D003681 ORTHO05D004703 6.5e-09 65.9 171 32.7
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 1.9e-08 64.3 288 28.8
Pp3c4_18170 Physcomitrium patens HOM05D003681 ORTHO05D004703 5.5e-08 62.8 307 28.0
HPP92_006269 Vanilla planifolia HOM05D003681 ORTHO05D004703 1.3e-06 58.2 118 41.5
Pp3c13_14720 Physcomitrium patens HOM05D003681 ORTHO05D004703 5.1e-06 56.2 270 28.5
Pp3c13_14730 Physcomitrium patens HOM05D003681 ORTHO05D004703 5.1e-06 56.2 270 28.5


User provided reference genes

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