Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 3.7e-76 288.1 143 100.0
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 3.0e-62 241.9 143 88.1
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.8e-60 235.3 143 86.0
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.0e-37 159.5 143 67.1
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 9.2e-35 150.6 143 63.6
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 7.5e-21 104.4 81 64.2
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 2.9e-20 102.4 81 61.7
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 4.9e-20 101.7 81 63.0
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 4.9e-20 101.7 81 63.0
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 4.9e-20 101.7 81 63.0
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 6.4e-20 101.3 81 61.7
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 8.3e-20 100.9 75 65.3
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 8.3e-20 100.9 81 63.0
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 8.3e-20 100.9 81 63.0
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 8.3e-20 100.9 81 64.2
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 1.4e-19 100.1 81 60.5
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 1.4e-19 100.1 81 60.5
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 1.9e-19 99.8 81 60.5
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 1.9e-19 99.8 81 59.3
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 1.9e-19 99.8 81 61.7
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 1.9e-19 99.8 81 61.7
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 2.4e-19 99.4 86 61.6
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 2.4e-19 99.4 81 61.7
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 3.2e-19 99.0 77 64.9
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 3.2e-19 99.0 81 59.3
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 3.2e-19 99.0 85 62.4
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 3.2e-19 99.0 85 57.6
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 3.2e-19 99.0 85 57.6
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 4.1e-19 98.6 76 61.8
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 5.4e-19 98.2 124 46.8
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 7.0e-19 97.8 74 63.5
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 9.2e-19 97.4 75 62.7
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 9.2e-19 97.4 85 56.5
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 1.2e-18 97.1 81 59.3
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 1.6e-18 96.7 78 61.5
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 2.1e-18 96.3 81 58.0
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 3.5e-18 95.5 75 62.7
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 4.6e-18 95.1 81 59.3
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 4.6e-18 95.1 81 59.3
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 4.6e-18 95.1 81 59.3
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 6.0e-18 94.7 81 56.8
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 6.0e-18 94.7 81 56.8
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 6.0e-18 94.7 73 61.6
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 6.0e-18 94.7 75 61.3
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 7.8e-18 94.4 81 60.5
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 7.8e-18 94.4 81 60.5
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 1.0e-17 94.0 81 58.0
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 1.0e-17 94.0 83 54.2
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 1.0e-17 94.0 81 59.3
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 1.3e-17 93.6 73 60.3
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 1.3e-17 93.6 81 55.6
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 1.3e-17 93.6 81 58.0
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 1.3e-17 93.6 83 56.6
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 1.3e-17 93.6 83 56.6
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.7e-17 93.2 76 61.8
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 1.7e-17 93.2 76 61.8
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 2.3e-17 92.8 87 56.3
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 3.0e-17 92.4 74 59.5
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 3.9e-17 92.0 67 67.2
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 3.9e-17 92.0 74 60.8
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 5.0e-17 91.7 81 56.8
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 5.0e-17 91.7 81 55.6
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 6.6e-17 91.3 75 62.7
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 8.6e-17 90.9 76 60.5
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 8.6e-17 90.9 85 55.3
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 8.6e-17 90.9 81 54.3
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 8.6e-17 90.9 69 63.8
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 1.1e-16 90.5 81 55.6
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 1.1e-16 90.5 81 58.0
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.5e-16 90.1 73 61.6
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 1.5e-16 90.1 67 64.2
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 1.5e-16 90.1 81 56.8
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 1.9e-16 89.7 73 61.6
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 1.9e-16 89.7 73 61.6
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 1.9e-16 89.7 75 57.3
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.9e-16 89.7 81 54.3
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 1.9e-16 89.7 81 53.1
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 2.5e-16 89.4 75 57.3
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 3.3e-16 89.0 81 54.3
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 4.3e-16 88.6 75 60.0
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 4.3e-16 88.6 75 57.3
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 4.3e-16 88.6 73 58.9
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 4.3e-16 88.6 79 53.2
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 4.3e-16 88.6 75 57.3
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 4.3e-16 88.6 85 54.1
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 5.6e-16 88.2 75 56.0
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 5.6e-16 88.2 85 56.5
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 7.3e-16 87.8 81 51.9
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 7.3e-16 87.8 75 57.3
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 9.5e-16 87.4 77 58.4
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 9.5e-16 87.4 76 56.6
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 2.1e-15 86.3 79 54.4
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 2.8e-15 85.9 69 58.0
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 3.6e-15 85.5 71 57.7
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 3.6e-15 85.5 75 56.0
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 4.7e-15 85.1 67 59.7
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 4.7e-15 85.1 79 54.4
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.1e-14 84.0 85 52.9
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 1.8e-14 83.2 86 57.0
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.8e-14 83.2 85 51.8
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 1.8e-14 83.2 79 51.9
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.3e-14 82.8 85 52.9
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 2.3e-14 82.8 69 56.5
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 3.1e-14 82.4 85 51.8
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 6.8e-14 81.3 67 58.2
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 2.6e-13 79.3 81 50.6
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 7.5e-13 77.8 75 46.7
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 4.9e-12 75.1 75 50.7
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 1.4e-11 73.6 114 43.0
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 7.1e-11 71.2 54 63.0
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 1.6e-10 70.1 48 64.6
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 1.3e-09 67.0 52 65.4
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.3e-09 67.0 54 63.0
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 4.3e-08 62.0 75 45.3
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 5.6e-08 61.6 75 42.7
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 7.3e-08 61.2 81 38.3
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 9.5e-08 60.8 75 38.7
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 1.6e-07 60.1 74 44.6
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 3.6e-07 58.9 75 38.7
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 3.6e-07 58.9 61 50.8
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 6.2e-07 58.2 75 38.7
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 2.4e-06 56.2 105 32.4


User provided reference genes

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