Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_22960 Sequoiadendron giganteum HOM05D000020 ORTHO05D383939 9.1e-40 166.4 81 100.0
SEGI_16815 Sequoiadendron giganteum HOM05D000020 ORTHO05D010558 5.4e-32 140.6 77 88.3
unitig_52.g17325 Utricularia gibba HOM05D000020 ORTHO05D002694 2.4e-08 62.0 71 43.7
ATR0059G016 Amborella trichopoda HOM05D000020 ORTHO05D002694 2.7e-07 58.5 46 60.9
Dinv39749 Davidia involucrata HOM05D000020 ORTHO05D002694 2.7e-07 58.5 46 56.5
Manes.05G125000 Manihot esculenta HOM05D000020 ORTHO05D010558 3.5e-07 58.2 47 53.2
PSO541G5659 Papaver somniferum HOM05D000020 ORTHO05D002694 3.5e-07 58.2 76 44.7
TPR.G32109 Trifolium pratense HOM05D000020 ORTHO05D002694 3.5e-07 58.2 46 58.7
unitig_62.g23245 Utricularia gibba HOM05D000020 ORTHO05D002694 3.5e-07 58.2 46 60.9
Ah.01g003030 Amaranthus hybridus HOM05D000020 ORTHO05D002694 4.6e-07 57.8 48 54.2
CiPaw.07G135600 Carya illinoinensis HOM05D000020 ORTHO05D010558 4.6e-07 57.8 43 55.8
Migut.H01262 Erythranthe guttata HOM05D000020 ORTHO05D002694 4.6e-07 57.8 46 58.7
HanXRQChr01g0024531 Helianthus annuus HOM05D000020 ORTHO05D000543 4.6e-07 57.8 45 55.6
PSO675G7480 Papaver somniferum HOM05D000020 ORTHO05D002694 4.6e-07 57.8 76 44.7
arahy.Tifrunner.gnm1.ann1.S7WXQ9 Arachis hypogaea HOM05D000020 ORTHO05D010558 6.0e-07 57.4 43 55.8
arahy.Tifrunner.gnm1.ann1.YN8IJ2 Arachis hypogaea HOM05D000020 ORTHO05D010558 6.0e-07 57.4 43 55.8
Oeu026111.1 Olea europaea HOM05D000020 ORTHO05D010558 6.0e-07 57.4 43 55.8
VMungo0647G0319 Vigna mungo HOM05D000020 ORTHO05D002694 6.0e-07 57.4 46 56.5
CSS0028229 Camellia sinensis var. sinensis HOM05D000020 ORTHO05D010558 7.8e-07 57.0 43 55.8
Medtr3g080410 Medicago truncatula HOM05D000020 ORTHO05D002694 7.8e-07 57.0 46 56.5
PGR031G3890 Punica granatum HOM05D000020 ORTHO05D010558 7.8e-07 57.0 42 59.5
TAR626G1555 Trochodendron aralioides HOM05D000020 ORTHO05D002694 7.8e-07 57.0 55 54.5
Cc10_g00430 Coffea canephora HOM05D000020 ORTHO05D010558 1.0e-06 56.6 43 53.5
COL.COLO4_09715 Corchorus olitorius HOM05D000020 ORTHO05D002694 1.0e-06 56.6 49 55.1
DCAR_012921 Daucus carota HOM05D000020 ORTHO05D002694 1.0e-06 56.6 46 56.5
Lj4C7T5 Lonicera japonica HOM05D000020 ORTHO05D010558 1.0e-06 56.6 47 51.1
Prupe.5G008200 Prunus persica HOM05D000020 ORTHO05D010558 1.0e-06 56.6 43 55.8
Solyc12g040860.2 Solanum lycopersicum HOM05D000020 ORTHO05D010558 1.0e-06 56.6 43 55.8
Sopen12g020610 Solanum pennellii HOM05D000020 ORTHO05D010558 1.0e-06 56.6 43 55.8
EL10Ac9g22543 Beta vulgaris HOM05D000020 ORTHO05D002694 1.3e-06 56.2 43 60.5
Lj1P781T14 Lonicera japonica HOM05D000020 ORTHO05D002694 1.3e-06 56.2 46 54.3
LjContig00029g0017972 Lotus japonicus HOM05D000020 ORTHO05D002694 1.3e-06 56.2 46 56.5
Nitab4.5_0010090g0010 Nicotiana tabacum HOM05D000020 ORTHO05D010558 1.3e-06 56.2 43 53.5
Oeu036761.1 Olea europaea HOM05D000020 ORTHO05D002694 1.3e-06 56.2 46 56.5
Peaxi162Scf00921g00242 Petunia axillaris HOM05D000020 ORTHO05D002694 1.3e-06 56.2 67 49.3
Peaxi162Scf01114g00012 Petunia axillaris HOM05D000020 ORTHO05D010558 1.3e-06 56.2 43 53.5
Atru.chr6.3254 Acer truncatum HOM05D000020 ORTHO05D002694 1.7e-06 55.8 55 50.9
Actinidia17063 Actinidia chinensis HOM05D000020 ORTHO05D010558 1.7e-06 55.8 43 53.5
CSS0012156 Camellia sinensis var. sinensis HOM05D000020 ORTHO05D002694 1.7e-06 55.8 46 56.5
CSS0012190 Camellia sinensis var. sinensis HOM05D000020 ORTHO05D002694 1.7e-06 55.8 46 56.5
Ca_06094_v3 Cicer arietinum L. HOM05D000020 ORTHO05D002694 1.7e-06 55.8 46 54.3
Dinv31971 Davidia involucrata HOM05D000020 ORTHO05D010558 1.7e-06 55.8 43 53.5
FvH4_5g25740 Fragaria vesca HOM05D000020 ORTHO05D010558 1.7e-06 55.8 43 53.5
FAN04G0648 Fragaria x ananassa HOM05D002204 ORTHO05D002875 1.7e-06 55.8 43 53.5
FAN08G2280 Fragaria x ananassa HOM05D002204 ORTHO05D002875 1.7e-06 55.8 43 53.5
FAN13G3236 Fragaria x ananassa HOM05D002204 ORTHO05D002875 1.7e-06 55.8 43 53.5
FAN18G1593 Fragaria x ananassa HOM05D000020 ORTHO05D010558 1.7e-06 55.8 43 53.5
Gohir.D07G193800 Gossypium hirsutum HOM05D000020 ORTHO05D002694 1.7e-06 55.8 43 58.1
Gorai.001G216900 Gossypium raimondii HOM05D000020 ORTHO05D002694 1.7e-06 55.8 43 58.1
HanXRQChr08g0216361 Helianthus annuus HOM05D000020 ORTHO05D010558 1.7e-06 55.8 42 59.5
Hma1.2p1_0177F.1_g078055 Hydrangea macrophylla HOM05D000020 ORTHO05D002694 1.7e-06 55.8 46 54.3
SGA_v2.0_scaffold159G37539 Striga asiatica HOM05D000020 ORTHO05D002694 1.7e-06 55.8 43 60.5
TAR628G0996 Trochodendron aralioides HOM05D000020 ORTHO05D010558 1.7e-06 55.8 43 53.5
ATR0807G050 Amborella trichopoda HOM05D000020 ORTHO05D010558 2.3e-06 55.5 47 51.1
Cpa.g.sc26.161 Carica papaya HOM05D000020 ORTHO05D010558 2.3e-06 55.5 42 54.8
COL.COLO4_37749 Corchorus olitorius HOM05D002204 ORTHO05D010558 2.3e-06 55.5 42 54.8
CsaV3_6G037720 Cucumis sativus L. HOM05D000020 ORTHO05D002694 2.3e-06 55.5 49 57.1
Psat0ss3348g0040 Pisum sativum HOM05D000020 ORTHO05D002694 2.3e-06 55.5 46 54.3
QL02p015192 Quercus lobata HOM05D000020 ORTHO05D010558 2.3e-06 55.5 42 54.8
vmacro21783 Vaccinium macrocarpon HOM05D000020 ORTHO05D010558 2.3e-06 55.5 42 54.8
CAN.G1558.1 Capsicum annuum HOM05D000020 ORTHO05D002694 3.0e-06 55.1 46 56.5
ClCG09G011230 Citrullus lanatus HOM05D000020 ORTHO05D002694 3.0e-06 55.1 49 57.1
Cc05_g02850 Coffea canephora HOM05D000020 ORTHO05D002694 3.0e-06 55.1 46 54.3
Nitab4.5_0000482g0280 Nicotiana tabacum HOM05D000020 ORTHO05D002694 3.0e-06 55.1 46 58.7
Atru.chr13.96 Acer truncatum HOM05D000020 ORTHO05D037883 3.9e-06 54.7 43 51.2
Aqoxy6G01591 Aquilegia oxysepala HOM05D000020 ORTHO05D010558 3.9e-06 54.7 42 54.8
arahy.Tifrunner.gnm1.ann1.578PES Arachis hypogaea HOM05D000020 ORTHO05D002694 3.9e-06 54.7 46 54.3
arahy.Tifrunner.gnm1.ann1.T7YHMF Arachis hypogaea HOM05D000020 ORTHO05D002694 3.9e-06 54.7 46 54.3
AUR62022784 Chenopodium quinoa HOM05D000020 ORTHO05D002694 3.9e-06 54.7 47 51.1
Ca_16284_v3 Cicer arietinum L. HOM05D000020 ORTHO05D002694 3.9e-06 54.7 46 56.5
ECA233G3564 Erigeron canadensis HOM05D000020 ORTHO05D010558 3.9e-06 54.7 42 54.8
HanXRQChr11g0346851 Helianthus annuus HOM05D000020 ORTHO05D000543 3.9e-06 54.7 43 55.8
Phvul.008G213400 Phaseolus vulgaris HOM05D000020 ORTHO05D002694 3.9e-06 54.7 46 54.3
RcHm_v2.0_Chr7g0216091 Rosa chinensis HOM05D000020 ORTHO05D010558 3.9e-06 54.7 43 53.5
Sabra14G0120400 Salix brachista HOM05D000020 ORTHO05D002694 3.9e-06 54.7 58 48.3
Hund18757 Selenicereus undatus HOM05D000020 ORTHO05D000543 3.9e-06 54.7 46 52.2
PGSC0003DMG400014457 Solanum tuberosum HOM05D000020 ORTHO05D010558 3.9e-06 54.7 43 53.5
Duzib093G0234 Durio zibethinus HOM05D000020 ORTHO05D010558 5.1e-06 54.3 42 52.4
Gohir.A01G103200 Gossypium hirsutum HOM05D000020 ORTHO05D010558 5.1e-06 54.3 42 52.4
Gohir.A07G187300 Gossypium hirsutum HOM05D000020 ORTHO05D002694 5.1e-06 54.3 43 58.1
Gohir.D01G088500 Gossypium hirsutum HOM05D000020 ORTHO05D010558 5.1e-06 54.3 42 52.4
Gorai.002G114200 Gossypium raimondii HOM05D000020 ORTHO05D010558 5.1e-06 54.3 42 52.4
Lsat_1_v5_gn_8_27461 Lactuca sativa HOM05D000020 ORTHO05D010558 5.1e-06 54.3 42 54.8
MBI05_g18493_MAGBIO Magnolia biondii HOM05D000020 ORTHO05D010558 5.1e-06 54.3 43 51.2
Medtr5g085580 Medicago truncatula HOM05D000020 ORTHO05D002694 5.1e-06 54.3 43 58.1
Nn1g07296 Nelumbo nucifera HOM05D000020 ORTHO05D002694 5.1e-06 54.3 75 41.3
Solyc07g049370.2 Solanum lycopersicum HOM05D000020 ORTHO05D002694 5.1e-06 54.3 74 44.6
Sopen07g024710 Solanum pennellii HOM05D000020 ORTHO05D002694 5.1e-06 54.3 74 44.6
PGSC0003DMG400000689 Solanum tuberosum HOM05D000020 ORTHO05D002694 5.1e-06 54.3 74 44.6
Thecc.08G063000 Theobroma cacao HOM05D000020 ORTHO05D010558 5.1e-06 54.3 42 52.4
TWI56G0177 Tripterygium wilfordii HOM05D000020 ORTHO05D010558 5.1e-06 54.3 42 57.1
vmacro09360 Vaccinium macrocarpon HOM05D000020 ORTHO05D002694 5.1e-06 54.3 46 54.3
CANSAT54G0119 Cannabis sativa HOM05D000020 ORTHO05D010558 6.6e-06 53.9 45 53.3
Cpa.g.sc12.252 Carica papaya HOM05D000020 ORTHO05D002694 6.6e-06 53.9 71 45.1
DCAR_013932 Daucus carota HOM05D000020 ORTHO05D010558 6.6e-06 53.9 43 53.5
Eucgr.F03575 Eucalyptus grandis HOM05D000020 ORTHO05D010558 6.6e-06 53.9 42 52.4
Glyma.14G048400 Glycine max HOM05D000020 ORTHO05D002694 6.6e-06 53.9 46 54.3
MBI13_g30260_MAGBIO Magnolia biondii HOM05D000020 ORTHO05D002694 6.6e-06 53.9 74 44.6
Nitab4.5_0005008g0010 Nicotiana tabacum HOM05D000020 ORTHO05D002694 6.6e-06 53.9 67 47.8
Oeu027263.1 Olea europaea HOM05D000020 ORTHO05D002694 6.6e-06 53.9 46 52.2
Rhsim04G0050500 Rhododendron simsii HOM05D000020 ORTHO05D002694 6.6e-06 53.9 46 52.2
Rhsim06G0004800 Rhododendron simsii HOM05D000020 ORTHO05D010558 6.6e-06 53.9 42 54.8
THA.LOC104826599 Tarenaya hassleriana HOM05D000020 ORTHO05D002694 6.6e-06 53.9 43 58.1
Thecc.01G181800 Theobroma cacao HOM05D000020 ORTHO05D002694 6.6e-06 53.9 43 55.8
TAR624G1026 Trochodendron aralioides HOM05D000020 ORTHO05D002694 6.6e-06 53.9 55 52.7
Aa31sc209G110 Aethionema arabicum HOM05D000020 ORTHO05D002694 8.6e-06 53.5 43 55.8
COL.COLO4_21874 Corchorus olitorius HOM05D000020 ORTHO05D002694 8.6e-06 53.5 43 58.1
Eucgr.A01095 Eucalyptus grandis HOM05D000020 ORTHO05D002694 8.6e-06 53.5 45 60.0
Hma1.2p1_0612F.1_g188940 Hydrangea macrophylla HOM05D000020 ORTHO05D010558 8.6e-06 53.5 43 53.5
Lsat_1_v5_gn_5_124440 Lactuca sativa HOM05D000020 ORTHO05D002694 8.6e-06 53.5 46 50.0
PGR042G0168 Punica granatum HOM05D000020 ORTHO05D002694 8.6e-06 53.5 43 58.1
Hund20903 Selenicereus undatus HOM05D000020 ORTHO05D000543 8.6e-06 53.5 45 51.1
Sc21g0001150 Simmondsia chinensis HOM05D000020 ORTHO05D002694 8.6e-06 53.5 46 50.0


User provided reference genes

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