Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_22916 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 1.6e-111 406.8 326 100.0
SEGI_17214 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 2.4e-59 233.4 205 64.9
SEGI_36083 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 1.4e-54 217.6 205 61.0
SEGI_16110 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 4.5e-53 212.6 205 59.5
SEGI_39020 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 7.6e-53 211.8 205 60.5
SEGI_14085 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 3.8e-52 209.5 205 60.5
SEGI_33454 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 5.0e-44 182.6 164 61.0
SEGI_39801 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 2.2e-20 104.0 163 44.2
SEGI_30342 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 3.8e-20 103.2 163 43.6
SEGI_00399 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 2.2e-15 87.4 164 39.0
Sabra17G0086600 Salix brachista HOM05D003328 ORTHO05D003722 3.8e-12 76.6 203 32.5
A10p23250 Brassica napus HOM05D003328 ORTHO05D003722 6.5e-12 75.9 202 31.2
BraA10t44393Z Brassica rapa HOM05D003328 ORTHO05D003722 8.5e-12 75.5 206 31.1
Actinidia26271 Actinidia chinensis HOM05D003328 ORTHO05D003722 2.5e-11 73.9 204 28.4
AL6G26620 Arabidopsis lyrata HOM05D003328 ORTHO05D003722 2.5e-11 73.9 162 35.2
Thecc.02G199400 Theobroma cacao HOM05D003105 ORTHO05D003471 2.5e-11 73.9 181 33.7
Gorai.005G194900 Gossypium raimondii HOM05D003105 ORTHO05D003471 3.2e-11 73.6 133 35.3
Gohir.D02G173200 Gossypium hirsutum HOM05D003105 ORTHO05D003471 4.2e-11 73.2 156 32.1
Gohir.A03G150400 Gossypium hirsutum HOM05D003105 ORTHO05D003471 7.2e-11 72.4 156 32.1
SEGI_28043 Sequoiadendron giganteum HOM05D003761 ORTHO05D004412 7.2e-11 72.4 141 34.8
CARHR197550 Cardamine hirsuta HOM05D003328 ORTHO05D003722 9.4e-11 72.0 195 33.8
Potri.017G100600 Populus trichocarpa HOM05D003328 ORTHO05D003722 9.4e-11 72.0 199 31.7
Sabra01G0043400 Salix brachista HOM05D003105 ORTHO05D003471 1.2e-10 71.6 196 29.6
Aa31LG11G13800 Aethionema arabicum HOM05D003328 ORTHO05D003722 1.6e-10 71.2 199 30.7
Thhalv10013771m.g Eutrema salsugineum HOM05D003328 ORTHO05D003722 1.6e-10 71.2 212 31.6
Hma1.2p1_1837F.1_g304780 Hydrangea macrophylla HOM05D003328 ORTHO05D003722 1.6e-10 71.2 202 32.2
Actinidia17606 Actinidia chinensis HOM05D003328 ORTHO05D003722 2.7e-10 70.5 176 29.0
Sp6g28340 Schrenkiella parvula HOM05D003328 ORTHO05D003722 2.7e-10 70.5 203 31.5
RcHm_v2.0_Chr4g0429561 Rosa chinensis HOM05D003105 ORTHO05D003471 3.6e-10 70.1 165 30.9
HPP92_024462 Vanilla planifolia HOM05D003105 ORTHO05D003471 3.6e-10 70.1 161 29.8
Hma1.2p1_0448F.1_g154830 Hydrangea macrophylla HOM05D003328 ORTHO05D003722 4.7e-10 69.7 176 30.7
Manes.02G059700 Manihot esculenta HOM05D003328 ORTHO05D003722 4.7e-10 69.7 173 34.7
Sabra04G0071400 Salix brachista HOM05D003328 ORTHO05D003722 4.7e-10 69.7 174 33.3
C09p61320 Brassica napus HOM05D003328 ORTHO05D003722 6.1e-10 69.3 199 30.7
BolC9t58973H Brassica oleracea HOM05D003328 ORTHO05D003722 8.0e-10 68.9 200 31.0
AT5G15780 Arabidopsis thaliana HOM05D003328 ORTHO05D003722 1.0e-09 68.6 190 33.2
COL.COLO4_13697 Corchorus olitorius HOM05D003105 ORTHO05D003471 1.0e-09 68.6 218 29.8
FvH4_4g23200 Fragaria vesca HOM05D003105 ORTHO05D003471 1.0e-09 68.6 165 30.3
FAN12G4071 Fragaria x ananassa HOM05D003105 ORTHO05D003471 1.0e-09 68.6 165 30.3
Glyma.08G360800 Glycine max HOM05D003105 ORTHO05D003471 1.0e-09 68.6 178 29.2
Rhsim08G0077700 Rhododendron simsii HOM05D003328 ORTHO05D003722 1.0e-09 68.6 196 29.1
Ciclev10012100m.g Citrus clementina HOM05D003328 ORTHO05D003722 1.8e-09 67.8 188 30.3
Lj1g0001231 Lotus japonicus HOM05D003328 ORTHO05D003722 1.8e-09 67.8 186 30.1
PGR004G1231 Punica granatum HOM05D003328 ORTHO05D003722 1.8e-09 67.8 190 33.2
Rhsim08G0077500 Rhododendron simsii HOM05D003328 ORTHO05D003722 1.8e-09 67.8 196 29.1
A02p03220 Brassica napus HOM05D003328 ORTHO05D003722 2.3e-09 67.4 203 31.0
Lj2g0016580 Lotus japonicus HOM05D003328 ORTHO05D003722 2.3e-09 67.4 189 27.0
Potri.001G060500 Populus trichocarpa HOM05D003105 ORTHO05D003471 2.3e-09 67.4 205 28.8
PGR042G0257 Punica granatum HOM05D003328 ORTHO05D003722 2.3e-09 67.4 186 29.6
Carub.0006s1393 Capsella rubella HOM05D003328 ORTHO05D003722 3.0e-09 67.0 194 32.0
Dinv03746 Davidia involucrata HOM05D003105 ORTHO05D003471 3.0e-09 67.0 207 25.6
MBI19_g00148_MAGBIO Magnolia biondii HOM05D003328 ORTHO05D003722 3.0e-09 67.0 200 31.0
Psat3g203200 Pisum sativum HOM05D003328 ORTHO05D003722 3.0e-09 67.0 185 32.4
QL02p065219 Quercus lobata HOM05D003328 ORTHO05D003722 3.0e-09 67.0 178 32.0
vmacro05612 Vaccinium macrocarpon HOM05D003328 ORTHO05D003722 4.0e-09 66.6 159 33.3
Duzib251G0616 Durio zibethinus HOM05D003105 ORTHO05D003471 5.2e-09 66.2 203 29.1
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 5.2e-09 66.2 160 31.9
Prupe.3G248600 Prunus persica HOM05D003328 ORTHO05D003722 6.8e-09 65.9 177 29.9
TWI18G0471 Tripterygium wilfordii HOM05D003105 ORTHO05D003471 6.8e-09 65.9 189 29.1
TAR629G1599 Trochodendron aralioides HOM05D003105 ORTHO05D003471 6.8e-09 65.9 189 29.1
TAR629G1921 Trochodendron aralioides HOM05D003328 ORTHO05D003722 6.8e-09 65.9 190 30.5
VMungo1383G2417 Vigna mungo HOM05D003105 ORTHO05D003471 6.8e-09 65.9 176 29.5
arahy.Tifrunner.gnm1.ann1.6PTW1V Arachis hypogaea HOM05D003328 ORTHO05D003722 8.8e-09 65.5 151 32.5
BraA02t05293Z Brassica rapa HOM05D003328 ORTHO05D003722 8.8e-09 65.5 203 30.5
EL10Ac6g15447 Beta vulgaris HOM05D003105 ORTHO05D003471 1.2e-08 65.1 158 27.8
Potri.003G167100 Populus trichocarpa HOM05D003105 ORTHO05D003471 1.2e-08 65.1 177 28.8
CsaV3_5G038710 Cucumis sativus L. HOM05D003328 ORTHO05D003722 1.5e-08 64.7 161 31.1
FAN17G2382 Fragaria x ananassa HOM05D003105 ORTHO05D003471 1.5e-08 64.7 165 29.7
Phvul.008G001600 Phaseolus vulgaris HOM05D003105 ORTHO05D003471 1.5e-08 64.7 164 30.5
Prupe.3G248700 Prunus persica HOM05D003328 ORTHO05D003722 1.5e-08 64.7 189 31.2
arahy.Tifrunner.gnm1.ann1.JWHM9L Arachis hypogaea HOM05D003328 ORTHO05D003722 2.0e-08 64.3 189 31.2
arahy.Tifrunner.gnm1.ann1.SVI1UB Arachis hypogaea HOM05D003328 ORTHO05D003722 2.0e-08 64.3 150 32.0
arahy.Tifrunner.gnm1.ann1.WJSS10 Arachis hypogaea HOM05D003328 ORTHO05D003722 2.0e-08 64.3 189 31.7
MSTRG.2972 Avicennia marina HOM05D003328 ORTHO05D003722 2.0e-08 64.3 176 29.0
BcaC03g18449 Brassica carinata HOM05D003328 ORTHO05D003722 2.0e-08 64.3 201 30.3
BolC2t06720H Brassica oleracea HOM05D003328 ORTHO05D003722 2.0e-08 64.3 201 30.3
COL.COLO4_19736 Corchorus olitorius HOM05D003328 ORTHO05D003722 2.0e-08 64.3 163 31.3
Peaxi162Scf00020g02335 Petunia axillaris HOM05D003328 ORTHO05D003722 2.0e-08 64.3 215 30.7
VMungo0464G1663 Vigna mungo HOM05D003328 ORTHO05D003722 2.0e-08 64.3 188 29.3
Actinidia18081 Actinidia chinensis HOM05D003328 ORTHO05D003722 2.6e-08 63.9 202 30.2
BcaNung02204 Brassica carinata HOM05D003328 ORTHO05D003722 2.6e-08 63.9 204 30.4
C02p07970 Brassica napus HOM05D003328 ORTHO05D003722 2.6e-08 63.9 189 31.7
CSS0050346 Camellia sinensis var. sinensis HOM05D003328 ORTHO05D003722 2.6e-08 63.9 184 28.3
Cpa.g.sc541.5 Carica papaya HOM05D003328 ORTHO05D003722 2.6e-08 63.9 188 30.3
MELO3C022051.2 Cucumis melo HOM05D003328 ORTHO05D003722 2.6e-08 63.9 155 31.0
vmacro01039 Vaccinium macrocarpon HOM05D003105 ORTHO05D003471 2.6e-08 63.9 179 28.5
vmacro18125 Vaccinium macrocarpon HOM05D003328 ORTHO05D003722 2.6e-08 63.9 160 31.2
GSVIVG01036543001 Vitis vinifera HOM05D003328 ORTHO05D003722 2.6e-08 63.9 169 33.1
CSS0002115 Camellia sinensis var. sinensis HOM05D003328 ORTHO05D003722 3.4e-08 63.5 191 30.4
CSS0026022 Camellia sinensis var. sinensis HOM05D003328 ORTHO05D003722 3.4e-08 63.5 191 30.4
CANSAT01G0148 Cannabis sativa HOM05D003105 ORTHO05D003471 3.4e-08 63.5 171 28.7
Gohir.D07G186200 Gossypium hirsutum HOM05D003328 ORTHO05D003722 3.4e-08 63.5 150 31.3
Gorai.001G206700 Gossypium raimondii HOM05D003328 ORTHO05D003722 3.4e-08 63.5 150 31.3
PSO478G1654 Papaver somniferum HOM05D003105 ORTHO05D003471 3.4e-08 63.5 189 27.0
Phvul.008G026300 Phaseolus vulgaris HOM05D003328 ORTHO05D003722 3.4e-08 63.5 188 30.3
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 3.4e-08 63.5 129 34.9
Sed0000331 Sechium edule HOM05D003328 ORTHO05D003722 3.4e-08 63.5 163 28.8
BcaC04g18938 Brassica carinata HOM05D003328 ORTHO05D003722 4.4e-08 63.2 194 30.9
Phvul.004G042800 Phaseolus vulgaris HOM05D003328 ORTHO05D003722 4.4e-08 63.2 183 30.1
Rhsim10G0059400 Rhododendron simsii HOM05D003328 ORTHO05D003722 5.7e-08 62.8 159 29.6
SEGI_16578 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 5.7e-08 62.8 125 37.6
CiPaw.03G082700 Carya illinoinensis HOM05D003328 ORTHO05D003722 7.5e-08 62.4 198 28.3
Phvul.004G042700 Phaseolus vulgaris HOM05D003328 ORTHO05D003722 7.5e-08 62.4 164 31.7
Dinv33868 Davidia involucrata HOM05D003328 ORTHO05D003722 9.8e-08 62.0 201 29.4
CANSAT64G0201 Cannabis sativa HOM05D003328 ORTHO05D003722 1.3e-07 61.6 159 28.9
Glyma.13G051900 Glycine max HOM05D003328 ORTHO05D003722 1.3e-07 61.6 179 28.5
Glyma.19G034900 Glycine max HOM05D003328 ORTHO05D003722 1.3e-07 61.6 155 31.0
Potri.004G114300 Populus trichocarpa HOM05D003328 ORTHO05D003722 1.3e-07 61.6 160 33.1
Zm00001eb408940 Zea mays HOM05D003105 ORTHO05D003471 1.3e-07 61.6 160 25.6
Glyma.19G035700 Glycine max HOM05D003328 ORTHO05D003722 1.7e-07 61.2 194 26.3
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 1.7e-07 61.2 147 32.0
MELO3C022338.2 Cucumis melo HOM05D003105 ORTHO05D003471 2.2e-07 60.8 199 26.6
QL03p051089 Quercus lobata HOM05D003105 ORTHO05D003471 2.2e-07 60.8 205 25.9
Sed0005495 Sechium edule HOM05D003328 ORTHO05D003722 2.2e-07 60.8 161 32.3
BcaB06g27587 Brassica carinata HOM05D003105 ORTHO05D003471 2.8e-07 60.5 160 26.9
CsaV3_6G007960 Cucumis sativus L. HOM05D003105 ORTHO05D003471 2.8e-07 60.5 192 25.5
Manes.12G007100 Manihot esculenta HOM05D003105 ORTHO05D003471 2.8e-07 60.5 201 26.4
Glyma.18G274200 Glycine max HOM05D003328 ORTHO05D003722 3.7e-07 60.1 187 28.9
Oeu031836.1 Olea europaea HOM05D003328 ORTHO05D003722 3.7e-07 60.1 171 31.6
TPR.G15938 Trifolium pratense HOM05D003328 ORTHO05D003722 3.7e-07 60.1 104 39.4
DCAR_011012 Daucus carota HOM05D003328 ORTHO05D003722 4.8e-07 59.7 178 28.7
Duzib211G0567 Durio zibethinus HOM05D003328 ORTHO05D003722 4.8e-07 59.7 189 27.5
Medtr7g016950 Medicago truncatula HOM05D003328 ORTHO05D003722 4.8e-07 59.7 189 30.7
Hund25487 Selenicereus undatus HOM05D003105 ORTHO05D003471 4.8e-07 59.7 167 27.5
A04p14090 Brassica napus HOM05D003105 ORTHO05D003471 6.3e-07 59.3 160 25.6
BraA04t17070Z Brassica rapa HOM05D003105 ORTHO05D003471 6.3e-07 59.3 160 25.6
Eucgr.J01410 Eucalyptus grandis HOM05D003328 ORTHO05D003722 6.3e-07 59.3 197 31.0
MBI16_g07038_MAGBIO Magnolia biondii HOM05D003328 ORTHO05D003722 6.3e-07 59.3 161 30.4
Medtr6g015995 Medicago truncatula HOM05D003328 ORTHO05D003722 6.3e-07 59.3 132 33.3
Gohir.A07G179300 Gossypium hirsutum HOM05D003328 ORTHO05D003722 8.3e-07 58.9 159 28.9
Manes.13G007300 Manihot esculenta HOM05D003105 ORTHO05D003471 8.3e-07 58.9 154 26.6
RcHm_v2.0_Chr2g0164841 Rosa chinensis HOM05D003328 ORTHO05D003722 8.3e-07 58.9 156 29.5
HPP92_001927 Vanilla planifolia HOM05D003105 ORTHO05D003471 8.3e-07 58.9 134 31.3
CiPaw.05G105500 Carya illinoinensis HOM05D003105 ORTHO05D003471 1.1e-06 58.5 165 27.9
MD09G1075500 Malus domestica HOM05D003328 ORTHO05D003722 1.1e-06 58.5 127 30.7
PSO782G2223 Papaver somniferum HOM05D003328 ORTHO05D003722 1.1e-06 58.5 191 27.2
Aqoxy3G03729 Aquilegia oxysepala HOM05D003328 ORTHO05D003722 1.4e-06 58.2 137 32.1
FvH4_6g46340 Fragaria vesca HOM05D003328 ORTHO05D003722 1.4e-06 58.2 151 29.8
FAN14G4737 Fragaria x ananassa HOM05D003328 ORTHO05D003722 1.4e-06 58.2 151 29.8
Lsat_1_v5_gn_4_173421 Lactuca sativa HOM05D003328 ORTHO05D003722 1.4e-06 58.2 186 27.4
Oeu062183.1 Olea europaea HOM05D003328 ORTHO05D003722 1.4e-06 58.2 182 28.6
ClCG06G001910 Citrullus lanatus HOM05D003105 ORTHO05D003471 1.8e-06 57.8 199 25.1
HanXRQChr15g0464801 Helianthus annuus HOM05D003328 ORTHO05D003722 1.8e-06 57.8 188 26.1
Nn3g16368 Nelumbo nucifera HOM05D003105 ORTHO05D003471 1.8e-06 57.8 131 28.2
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 2.4e-06 57.4 191 27.7
HanXRQChr15g0489341 Helianthus annuus HOM05D003328 ORTHO05D003722 2.4e-06 57.4 196 26.5
Phvul.004G042600 Phaseolus vulgaris HOM05D003328 ORTHO05D003722 2.4e-06 57.4 135 32.6
Sabra03G0122500 Salix brachista HOM05D003105 ORTHO05D003471 2.4e-06 57.4 209 26.3
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 3.1e-06 57.0 130 36.2
Haze_14905 Corylus avellana HOM05D003105 ORTHO05D003471 3.1e-06 57.0 167 26.3
FAN09G3792 Fragaria x ananassa HOM05D003328 ORTHO05D003722 3.1e-06 57.0 153 30.7
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 4.1e-06 56.6 125 32.8
Cc07_g04510 Coffea canephora HOM05D003328 ORTHO05D003722 5.4e-06 56.2 213 30.0
Glyma.08G251500 Glycine max HOM05D003328 ORTHO05D003722 5.4e-06 56.2 187 28.3
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 5.4e-06 56.2 125 27.2
PSO017G5017 Papaver somniferum HOM05D003105 ORTHO05D003471 5.4e-06 56.2 189 25.4
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 7.0e-06 55.8 125 32.8
THA.LOC104820977 Tarenaya hassleriana HOM05D003328 ORTHO05D003722 7.0e-06 55.8 158 30.4
FAN02G1536 Fragaria x ananassa HOM05D003328 ORTHO05D003722 9.1e-06 55.5 153 30.7
Nn3g17524 Nelumbo nucifera HOM05D003328 ORTHO05D003722 9.1e-06 55.5 152 29.6
SGA_v2.0_scaffold148G36453 Striga asiatica HOM05D003328 ORTHO05D003722 9.1e-06 55.5 200 26.0


User provided reference genes

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