Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_22909 Sequoiadendron giganteum HOM05D007340 ORTHO05D008979 2.0e-90 337.4 553 100.0
Hma1.2p1_2025F.1_g311460 Hydrangea macrophylla HOM05D007340 ORTHO05D008979 1.7e-12 78.6 97 39.2
Dinv44465 Davidia involucrata HOM05D007340 ORTHO05D008979 2.9e-12 77.8 100 41.0
CiPaw.01G157600 Carya illinoinensis HOM05D007340 ORTHO05D008979 5.0e-12 77.0 93 46.2
Gorai.006G074200 Gossypium raimondii HOM05D001150 ORTHO05D008979 1.4e-11 75.5 99 37.4
PGSC0003DMG400004352 Solanum tuberosum HOM05D007340 ORTHO05D008979 1.9e-11 75.1 91 41.8
CAN.G522.11 Capsicum annuum HOM05D007340 ORTHO05D008979 2.5e-11 74.7 91 41.8
Gohir.D09G059500 Gossypium hirsutum HOM05D001150 ORTHO05D008979 2.5e-11 74.7 99 37.4
Rhsim04G0212000 Rhododendron simsii HOM05D001150 ORTHO05D000998 4.2e-11 73.9 87 40.2
Hma1.2p1_0511F.1_g169170 Hydrangea macrophylla HOM05D007340 ORTHO05D008979 9.4e-11 72.8 97 37.1
Lj4P768T34 Lonicera japonica HOM05D007340 ORTHO05D008979 9.4e-11 72.8 91 42.9
PGR042G0769 Punica granatum HOM05D007083 ORTHO05D008801 1.2e-10 72.4 88 35.2
QL06p005970 Quercus lobata HOM05D007340 ORTHO05D008979 1.2e-10 72.4 80 45.0
Cfa015550 Carpinus fangiana HOM05D007340 ORTHO05D008979 1.6e-10 72.0 93 41.9
Duzib151G0496 Durio zibethinus HOM05D007340 ORTHO05D008979 1.6e-10 72.0 93 41.9
vmacro17996 Vaccinium macrocarpon HOM05D007340 ORTHO05D008979 2.1e-10 71.6 86 39.5
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 2.7e-10 71.2 91 39.6
Prupe.3G113000 Prunus persica HOM05D007340 ORTHO05D008979 2.7e-10 71.2 85 44.7
Sopen01g032100 Solanum pennellii HOM05D007340 ORTHO05D008979 2.7e-10 71.2 91 40.7
Atru.chr4.2678 Acer truncatum HOM05D007340 ORTHO05D008979 3.6e-10 70.9 93 40.9
Atru.chr4.2685 Acer truncatum HOM05D007340 ORTHO05D008979 3.6e-10 70.9 93 40.9
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 3.6e-10 70.9 91 38.5
Prupe.8G019300 Prunus persica HOM05D007083 ORTHO05D008801 3.6e-10 70.9 88 38.6
THA.LOC104819595 Tarenaya hassleriana HOM05D007083 ORTHO05D008801 3.6e-10 70.9 91 36.3
Nitab4.5_0003070g0020 Nicotiana tabacum HOM05D007340 ORTHO05D008979 4.7e-10 70.5 91 39.6
Thecc.04G270900 Theobroma cacao HOM05D007340 ORTHO05D008979 4.7e-10 70.5 95 41.1
Gohir.A09G060400 Gossypium hirsutum HOM05D001150 ORTHO05D008979 6.1e-10 70.1 99 36.4
Gohir.A12G030100 Gossypium hirsutum HOM05D007083 ORTHO05D008801 7.9e-10 69.7 88 33.0
EL10Ac8g18451 Beta vulgaris HOM05D007340 ORTHO05D008979 1.0e-09 69.3 91 37.4
COL.COLO4_13983 Corchorus olitorius HOM05D007340 ORTHO05D008979 1.8e-09 68.6 78 43.6
Haze_00999 Corylus avellana HOM05D007340 ORTHO05D008979 1.8e-09 68.6 93 39.8
arahy.Tifrunner.gnm1.ann1.PE1C4R Arachis hypogaea HOM05D007340 ORTHO05D008979 3.0e-09 67.8 80 42.5
CSS0042730 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 3.0e-09 67.8 100 38.0
TAR633G1855 Trochodendron aralioides HOM05D007340 ORTHO05D008979 3.0e-09 67.8 89 40.4
CSS0023925 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 3.9e-09 67.4 100 38.0
AUR62021475 Chenopodium quinoa HOM05D007340 ORTHO05D008979 3.9e-09 67.4 90 38.9
RcHm_v2.0_Chr4g0419121 Rosa chinensis HOM05D007340 ORTHO05D008979 3.9e-09 67.4 76 40.8
AUR62010965 Chenopodium quinoa HOM05D007340 ORTHO05D008979 5.2e-09 67.0 90 38.9
Gohir.D08G046350 Gossypium hirsutum HOM05D007340 ORTHO05D008979 5.2e-09 67.0 98 34.7
Gorai.004G045600 Gossypium raimondii HOM05D007340 ORTHO05D008979 5.2e-09 67.0 98 34.7
AUR62016660 Chenopodium quinoa HOM05D007083 ORTHO05D008801 6.7e-09 66.6 83 34.9
EL10Ac9g21792 Beta vulgaris HOM05D007083 ORTHO05D008801 8.8e-09 66.2 83 32.5
CAN.G322.86 Capsicum annuum HOM05D007083 ORTHO05D008801 8.8e-09 66.2 91 33.0
Ca_20820_v3 Cicer arietinum L. HOM05D007083 ORTHO05D008801 8.8e-09 66.2 88 33.0
CSS0037889 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 1.1e-08 65.9 91 38.5
AUR62011398 Chenopodium quinoa HOM05D007083 ORTHO05D008801 1.1e-08 65.9 83 34.9
Oeu021055.1 Olea europaea HOM05D007340 ORTHO05D008979 1.1e-08 65.9 78 39.7
Nitab4.5_0001401g0200 Nicotiana tabacum HOM05D007083 ORTHO05D008801 1.5e-08 65.5 91 33.0
Solyc01g109060.4 Solanum lycopersicum HOM05D007083 ORTHO05D008801 1.5e-08 65.5 91 33.0
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 1.5e-08 65.5 91 33.0
PGSC0003DMG400025930 Solanum tuberosum HOM05D007083 ORTHO05D008801 1.5e-08 65.5 91 33.0
Cpa.g.sc16.57 Carica papaya HOM05D007340 ORTHO05D008979 2.0e-08 65.1 75 44.0
ClCG05G001120 Citrullus lanatus HOM05D007340 ORTHO05D008979 2.0e-08 65.1 93 39.8
Gohir.D12G042300 Gossypium hirsutum HOM05D007083 ORTHO05D008801 2.0e-08 65.1 81 33.3
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 2.0e-08 65.1 78 38.5
Ciclev10007051m.g Citrus clementina HOM05D007340 ORTHO05D008979 2.6e-08 64.7 93 38.7
TAR362G1049 Trochodendron aralioides HOM05D005764 ORTHO05D006600 2.6e-08 64.7 130 31.5
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 3.3e-08 64.3 83 33.7
Lsat_1_v5_gn_8_10680 Lactuca sativa HOM05D007340 ORTHO05D008979 4.4e-08 63.9 92 37.0
Cc03_g02890 Coffea canephora HOM05D007340 ORTHO05D008979 5.7e-08 63.5 92 35.9
Medtr5g094770 Medicago truncatula HOM05D007340 ORTHO05D008979 5.7e-08 63.5 80 42.5
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 7.4e-08 63.2 75 38.7
BcaC06g36074 Brassica carinata HOM05D007083 ORTHO05D008801 9.7e-08 62.8 88 36.4
C07p08180 Brassica napus HOM05D007083 ORTHO05D008801 9.7e-08 62.8 88 36.4
BolC7t41234H Brassica oleracea HOM05D007083 ORTHO05D008801 9.7e-08 62.8 88 36.4
Sc18g0004780 Simmondsia chinensis HOM05D007083 ORTHO05D008801 9.7e-08 62.8 83 33.7
Ah.01g019870 Amaranthus hybridus HOM05D007083 ORTHO05D008801 1.3e-07 62.4 114 28.1
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 1.3e-07 62.4 83 32.5
Nitab4.5_0008892g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.3e-07 62.4 90 37.8
SEGI_02979 Sequoiadendron giganteum HOM05D007551 ORTHO05D006600 1.3e-07 62.4 80 33.8
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.7e-07 62.0 90 37.8
HanXRQChr12g0374971 Helianthus annuus HOM05D007083 ORTHO05D008801 2.2e-07 61.6 79 31.6
Solyc11g005940.3 Solanum lycopersicum HOM05D007551 ORTHO05D009424 2.8e-07 61.2 112 36.6
FAN12G4271 Fragaria x ananassa HOM05D007340 ORTHO05D008979 3.7e-07 60.8 72 36.1
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 3.7e-07 60.8 78 37.2
Sopen11g001880 Solanum pennellii HOM05D007551 ORTHO05D009424 3.7e-07 60.8 112 36.6
FvH4_4g14110 Fragaria vesca HOM05D007340 ORTHO05D008979 4.8e-07 60.5 72 36.1
Cfa009846 Carpinus fangiana HOM05D007455 ORTHO05D009431 6.3e-07 60.1 73 32.9
Haze_23220 Corylus avellana HOM05D007455 ORTHO05D009431 6.3e-07 60.1 73 32.9
DCAR_016460 Daucus carota HOM05D005764 ORTHO05D006600 6.3e-07 60.1 79 36.7
SHI00355 Sapria himalayana HOM05D007340 ORTHO05D008979 6.3e-07 60.1 82 40.2
SEGI_00853 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 6.3e-07 60.1 97 34.0
MSTRG.27466 Avicennia marina HOM05D007390 ORTHO05D009114 8.2e-07 59.7 78 39.7
DCAR_030586 Daucus carota HOM05D007340 ORTHO05D008979 8.2e-07 59.7 77 41.6
Migut.G00250 Erythranthe guttata HOM05D007340 ORTHO05D008979 1.1e-06 59.3 92 38.0
Gohir.A04G115700 Gossypium hirsutum HOM05D007083 ORTHO05D008801 1.1e-06 59.3 68 36.8
Sc18g0004860 Simmondsia chinensis HOM05D007083 ORTHO05D008801 1.1e-06 59.3 83 32.5
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 1.1e-06 59.3 78 35.9
CDE02G2785 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 1.4e-06 58.9 74 33.8
MELO3C006065.2 Cucumis melo HOM05D007340 ORTHO05D008979 1.4e-06 58.9 101 34.7
Aqoxy1G00452 Aquilegia oxysepala HOM05D007455 ORTHO05D009431 1.8e-06 58.5 76 35.5
Phvul.003G036500 Phaseolus vulgaris HOM05D007340 ORTHO05D008979 1.8e-06 58.5 81 39.5
QL04p014212 Quercus lobata HOM05D007455 ORTHO05D009431 2.4e-06 58.2 73 32.9
Rhsim13G0211000 Rhododendron simsii HOM05D007455 ORTHO05D009431 2.4e-06 58.2 76 31.6
THA.LOC104804672 Tarenaya hassleriana HOM05D005764 ORTHO05D006600 2.4e-06 58.2 78 37.2
TWI79G0736 Tripterygium wilfordii HOM05D007455 ORTHO05D009431 2.4e-06 58.2 73 32.9
Sc16g0008150 Simmondsia chinensis HOM05D007390 ORTHO05D009114 3.1e-06 57.8 75 40.0
Solyc03g118280.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 3.1e-06 57.8 78 37.2
Sopen03g037190 Solanum pennellii HOM05D005764 ORTHO05D006600 3.1e-06 57.8 78 37.2
BraA10t44135Z Brassica rapa HOM05D007340 ORTHO05D008979 4.1e-06 57.4 91 33.0
MBI19_g17433_MAGBIO Magnolia biondii HOM05D007083 ORTHO05D008801 4.1e-06 57.4 84 32.1
PGSC0003DMG402028683 Solanum tuberosum HOM05D007551 ORTHO05D009424 4.1e-06 57.4 112 35.7
A10p20720 Brassica napus HOM05D007340 ORTHO05D008979 5.3e-06 57.0 91 33.0
Cc02_g33170 Coffea canephora HOM05D007570 ORTHO05D009365 5.3e-06 57.0 81 38.3
DCAR_002103 Daucus carota HOM05D007455 ORTHO05D009431 5.3e-06 57.0 80 31.2
Thhalv10003592m.g Eutrema salsugineum HOM05D005764 ORTHO05D006600 5.3e-06 57.0 78 38.5
Thecc.01G192500 Theobroma cacao HOM05D006931 ORTHO05D008782 5.3e-06 57.0 95 31.6
ClCG09G021340 Citrullus lanatus HOM05D007390 ORTHO05D009114 7.0e-06 56.6 79 35.4
CsaV3_3G008450 Cucumis sativus L. HOM05D007340 ORTHO05D008979 7.0e-06 56.6 93 35.5
Nitab4.5_0000856g0020 Nicotiana tabacum HOM05D007551 ORTHO05D009424 7.0e-06 56.6 112 34.8
MSTRG.22851 Avicennia marina HOM05D005764 ORTHO05D006600 9.1e-06 56.2 77 37.7
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 9.1e-06 56.2 91 35.2
Rhsim04G0012100 Rhododendron simsii HOM05D007390 ORTHO05D009114 9.1e-06 56.2 78 35.9
PGSC0003DMG401009622 Solanum tuberosum HOM05D007455 ORTHO05D009431 9.1e-06 56.2 74 32.4


User provided reference genes

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