Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.4e-108 396.4 205 100.0
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 6.5e-42 174.9 201 51.2
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 6.5e-42 174.9 208 50.5
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 2.7e-40 169.5 212 51.9
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 1.4e-39 167.2 201 51.7
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 1.4e-39 167.2 212 51.4
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 2.3e-39 166.4 204 53.9
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 6.7e-39 164.9 203 50.7
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 6.7e-39 164.9 211 51.2
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 4.4e-38 162.2 210 47.6
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 7.4e-38 161.4 203 50.7
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 7.4e-38 161.4 199 48.7
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 1.7e-37 160.2 205 55.1
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 1.7e-37 160.2 205 52.7
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 3.7e-37 159.1 202 51.0
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 1.1e-36 157.5 204 49.5
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.4e-36 157.1 205 50.2
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 1.4e-36 157.1 202 47.5
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 1.8e-36 156.8 202 50.5
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 2.4e-36 156.4 203 45.8
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 5.3e-36 155.2 201 50.7
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 7.0e-36 154.8 203 47.8
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 9.1e-36 154.5 195 46.2
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 9.1e-36 154.5 204 48.0
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 9.1e-36 154.5 211 46.9
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 1.2e-35 154.1 203 50.2
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 1.2e-35 154.1 206 47.6
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 1.6e-35 153.7 213 47.9
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.6e-35 153.7 210 49.0
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.6e-35 152.9 211 49.8
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 2.6e-35 152.9 203 45.8
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 4.5e-35 152.1 202 48.0
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 4.5e-35 152.1 203 50.7
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 5.9e-35 151.8 197 46.2
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 5.9e-35 151.8 201 51.7
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 5.9e-35 151.8 210 49.5
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 5.9e-35 151.8 204 46.6
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 5.9e-35 151.8 204 49.5
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 7.7e-35 151.4 203 47.3
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.0e-34 151.0 201 49.3
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 1.7e-34 150.2 203 49.8
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 1.7e-34 150.2 204 44.1
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.9e-34 149.4 205 50.7
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.9e-34 149.4 202 49.5
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 8.5e-34 147.9 205 50.2
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 1.1e-33 147.5 200 51.0
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 1.1e-33 147.5 203 48.8
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.1e-33 147.5 205 50.7
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 1.9e-33 146.7 205 44.4
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 3.2e-33 146.0 207 47.3
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 3.2e-33 146.0 207 47.3
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 3.2e-33 146.0 207 47.3
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 3.2e-33 146.0 199 46.2
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 3.2e-33 146.0 203 49.8
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 3.2e-33 146.0 203 45.8
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 3.2e-33 146.0 204 47.1
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 4.2e-33 145.6 205 49.8
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 7.2e-33 144.8 205 49.8
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 7.2e-33 144.8 201 49.3
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 7.2e-33 144.8 204 47.1
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 9.4e-33 144.4 203 46.3
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.2e-32 144.1 205 49.3
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 1.6e-32 143.7 206 46.1
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.1e-32 143.3 148 55.4
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.1e-32 143.3 207 48.3
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 2.7e-32 142.9 212 44.8
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 3.6e-32 142.5 203 47.3
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 4.7e-32 142.1 204 46.1
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 4.7e-32 142.1 199 48.7
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 6.1e-32 141.7 201 49.8
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 8.0e-32 141.4 203 49.8
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 8.0e-32 141.4 142 57.0
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 1.0e-31 141.0 202 43.1
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 1.0e-31 141.0 205 45.4
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 1.8e-31 140.2 208 43.3
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 3.0e-31 139.4 160 55.6
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 4.0e-31 139.0 142 57.0
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 5.2e-31 138.7 206 46.1
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 5.2e-31 138.7 158 52.5
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 5.2e-31 138.7 148 54.1
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 5.2e-31 138.7 200 47.5
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 6.7e-31 138.3 203 44.8
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.2e-30 137.5 197 48.2
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 1.5e-30 137.1 205 45.4
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 1.5e-30 137.1 208 45.7
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 1.5e-30 137.1 208 45.7
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 1.5e-30 137.1 144 55.6
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 1.5e-30 137.1 151 51.7
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 2.0e-30 136.7 205 47.3
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 2.0e-30 136.7 140 56.4
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 2.0e-30 136.7 206 42.7
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 2.0e-30 136.7 205 44.9
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 2.0e-30 136.7 199 44.7
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 3.3e-30 136.0 208 44.2
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 4.4e-30 135.6 206 43.2
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 5.7e-30 135.2 209 47.4
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 5.7e-30 135.2 206 41.7
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 7.5e-30 134.8 208 43.8
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 7.5e-30 134.8 208 43.8
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 7.5e-30 134.8 204 43.6
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 9.7e-30 134.4 207 44.9
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 9.7e-30 134.4 203 42.4
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.3e-29 134.0 206 42.7
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 1.7e-29 133.7 208 44.2
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 1.7e-29 133.7 205 46.8
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 2.2e-29 133.3 148 53.4
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 2.8e-29 132.9 143 54.5
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 3.7e-29 132.5 199 44.7
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 1.1e-28 131.0 205 46.3
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 1.1e-28 131.0 205 45.9
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 4.1e-28 129.0 160 52.5
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 5.3e-28 128.6 145 51.7
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 9.1e-28 127.9 206 44.7
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 9.1e-28 127.9 201 42.3
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 1.6e-27 127.1 201 45.3
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 2.0e-27 126.7 205 44.9
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 2.0e-27 126.7 173 46.8
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 3.5e-27 125.9 157 49.0
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 4.5e-27 125.6 144 52.1
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 1.3e-26 124.0 209 45.0
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 1.3e-26 124.0 262 37.4
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 2.2e-26 123.2 197 41.6
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 1.1e-25 120.9 202 41.6
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 1.5e-25 120.6 203 40.4
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.5e-25 120.6 150 48.0
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 1.5e-25 120.6 209 43.1
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 1.9e-25 120.2 207 39.1
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 1.9e-25 120.2 154 48.1
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 3.2e-25 119.4 216 39.8
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 5.5e-25 118.6 199 40.2
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 5.5e-25 118.6 204 37.3
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 7.2e-25 118.2 210 40.0
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 7.2e-25 118.2 199 40.2
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 2.1e-24 116.7 199 45.7
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 2.7e-24 116.3 202 40.1
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 3.6e-24 115.9 208 40.4
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 3.6e-24 115.9 204 40.2
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 3.6e-24 115.9 107 55.1
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 4.7e-24 115.5 203 39.4
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 8.0e-24 114.8 205 39.0
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 8.0e-24 114.8 202 40.1
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 1.0e-23 114.4 201 42.8
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 4.4e-22 109.0 87 63.2
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 7.5e-22 108.2 190 41.6
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 3.7e-21 105.9 174 46.0
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 2.4e-20 103.2 176 40.3
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 7.0e-20 101.7 203 37.4
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 5.9e-19 98.6 129 44.2
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 2.3e-18 96.7 140 45.0
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 1.1e-17 94.4 139 43.2
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 1.9e-17 93.6 161 42.2
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.2e-16 90.9 150 41.3
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.7e-16 89.0 129 45.7
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 2.3e-10 70.1 45 75.6
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 1.2e-08 64.3 113 34.5
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 2.1e-08 63.5 64 57.8


User provided reference genes

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