Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.7e-123 446.0 228 100.0
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 2.1e-118 429.1 226 96.9
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 4.2e-90 335.1 228 73.2
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 5.5e-90 334.7 228 74.1
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 2.1e-89 332.8 228 74.1
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 3.5e-89 332.0 228 73.2
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 3.5e-89 332.0 228 74.1
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 4.6e-89 331.6 228 73.2
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 4.6e-89 331.6 228 73.2
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 6.0e-89 331.3 214 78.0
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 6.0e-89 331.3 228 73.2
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 7.9e-89 330.9 228 73.2
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.0e-88 330.5 228 73.2
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.0e-88 330.5 229 74.7
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 1.3e-88 330.1 229 74.7
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 1.3e-88 330.1 228 72.8
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.8e-88 329.7 228 73.2
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 1.8e-88 329.7 214 77.1
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 2.3e-88 329.3 214 77.1
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 3.0e-88 328.9 228 72.8
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 3.9e-88 328.6 214 75.7
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.9e-88 328.6 228 73.2
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 3.9e-88 328.6 228 72.4
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 3.9e-88 328.6 228 72.4
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 5.1e-88 328.2 222 73.4
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 5.1e-88 328.2 214 76.6
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 5.1e-88 328.2 214 76.6
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 5.1e-88 328.2 214 75.7
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 6.7e-88 327.8 215 78.1
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 6.7e-88 327.8 227 72.7
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 8.7e-88 327.4 228 72.8
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 8.7e-88 327.4 214 75.7
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 8.7e-88 327.4 229 74.2
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 1.1e-87 327.0 228 71.9
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.5e-87 326.6 228 72.8
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 1.5e-87 326.6 231 71.9
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 1.9e-87 326.2 214 75.2
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 1.9e-87 326.2 214 75.2
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 1.9e-87 326.2 214 75.2
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 1.9e-87 326.2 230 73.5
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 1.9e-87 326.2 228 71.5
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 3.3e-87 325.5 228 72.4
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 4.3e-87 325.1 228 73.7
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 4.3e-87 325.1 214 75.2
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 4.3e-87 325.1 214 77.1
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 4.3e-87 325.1 228 72.8
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 4.3e-87 325.1 228 71.1
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 4.3e-87 325.1 214 75.7
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 4.3e-87 325.1 224 73.2
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 4.3e-87 325.1 223 72.6
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 5.7e-87 324.7 214 75.7
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 5.7e-87 324.7 214 76.2
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 7.4e-87 324.3 214 75.7
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 9.6e-87 323.9 214 74.8
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 9.6e-87 323.9 214 74.8
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 9.6e-87 323.9 229 73.4
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.6e-86 323.2 214 74.3
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 2.1e-86 322.8 228 70.6
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.1e-86 322.8 214 75.2
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 2.8e-86 322.4 214 75.7
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.8e-86 322.4 214 75.2
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 3.7e-86 322.0 206 75.7
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 3.7e-86 322.0 214 74.8
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 4.8e-86 321.6 216 75.0
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 4.8e-86 321.6 214 76.2
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 8.2e-86 320.9 227 70.5
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 8.2e-86 320.9 214 73.8
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 8.2e-86 320.9 216 73.6
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 1.8e-85 319.7 214 74.3
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 1.8e-85 319.7 214 74.3
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 1.8e-85 319.7 220 72.7
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.8e-85 319.7 213 72.8
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.8e-85 319.7 228 71.9
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 2.4e-85 319.3 214 74.3
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 2.4e-85 319.3 214 75.7
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 3.1e-85 318.9 214 73.8
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 3.1e-85 318.9 214 73.8
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 5.3e-85 318.2 214 74.3
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 5.3e-85 318.2 206 77.2
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 9.0e-85 317.4 214 75.2
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 9.0e-85 317.4 214 74.3
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 1.2e-84 317.0 214 72.9
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.2e-84 317.0 206 76.2
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 1.2e-84 317.0 214 73.4
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 1.5e-84 316.6 214 73.4
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 2.0e-84 316.2 230 69.6
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 3.4e-84 315.5 214 72.9
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 3.4e-84 315.5 235 68.9
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 4.5e-84 315.1 205 76.1
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 5.8e-84 314.7 214 72.9
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 1.0e-83 313.9 214 72.4
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 1.0e-83 313.9 215 73.0
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 1.7e-83 313.2 211 72.0
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 2.2e-83 312.8 228 69.3
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 4.9e-83 311.6 216 74.1
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 6.5e-83 311.2 215 72.1
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 6.5e-83 311.2 214 72.0
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.1e-82 310.5 205 75.1
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 1.4e-82 310.1 226 68.1
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 2.1e-81 306.2 215 72.6
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 2.7e-81 305.8 214 72.0
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 6.1e-81 304.7 215 71.6
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 1.0e-80 303.9 201 73.6
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 1.0e-80 303.9 202 74.3
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 2.3e-80 302.8 201 75.6
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 5.1e-80 301.6 215 68.4
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 6.7e-80 301.2 200 74.5
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 1.5e-79 300.1 219 69.4
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 3.3e-79 298.9 215 70.7
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 4.3e-79 298.5 214 71.0
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 9.7e-79 297.4 200 73.5
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 1.1e-77 293.9 252 61.9
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 1.8e-77 293.1 201 71.6
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 5.3e-77 291.6 212 69.8
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 1.3e-75 287.0 224 66.1
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 1.3e-75 287.0 214 66.4
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 3.8e-75 285.4 214 65.0
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 1.1e-74 283.9 203 69.5
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 3.6e-73 278.9 196 72.4
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 2.2e-70 269.6 191 70.7
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 2.8e-70 269.2 228 64.9
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 3.7e-70 268.9 178 75.8
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.0e-68 263.1 182 72.0
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 1.9e-66 256.5 181 72.4
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 1.1e-63 247.3 164 76.2
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 1.2e-60 237.3 239 53.1
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 2.2e-59 233.0 164 71.3
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 6.5e-59 231.5 193 63.2
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 7.2e-58 228.0 214 59.3
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 1.2e-57 227.3 198 62.1
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 3.6e-57 225.7 230 57.0
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 1.5e-55 220.3 160 68.1
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 2.6e-55 219.5 215 52.6
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 1.7e-54 216.9 150 71.3
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 8.8e-48 194.5 140 66.4
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 7.5e-47 191.4 151 62.9
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 5.9e-44 181.8 131 69.5
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 2.5e-42 176.4 202 53.0
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 5.4e-37 158.7 100 77.0
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 4.4e-31 139.0 106 65.1
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 6.3e-30 135.2 115 60.0
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 4.7e-25 119.0 109 59.6
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.5e-23 114.0 88 64.8
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 1.7e-22 110.5 92 58.7
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.0e-20 103.6 60 81.7
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 5.6e-18 95.5 134 44.0
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.7e-14 84.0 51 80.4
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 6.0e-12 75.5 211 29.4
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 7.8e-12 75.1 57 68.4
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 2.3e-11 73.6 63 54.0
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.9e-10 70.5 96 43.8
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.6e-07 60.1 63 54.0
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 3.4e-07 59.7 114 36.0
Prupe.7G035700 Prunus persica HOM05D000223 ORTHO05D008670 1.3e-06 57.8 151 27.8
FAN21G0583 Fragaria x ananassa HOM05D000083 ORTHO05D020638 1.7e-06 57.4 176 27.8
MBI10_g42733_MAGBIO Magnolia biondii HOM05D000088 ORTHO05D008670 6.4e-06 55.5 151 27.2
Cpa.g.sc37.35 Carica papaya HOM05D000223 ORTHO05D008670 8.4e-06 55.1 144 27.8
MD12G1099600 Malus domestica HOM05D000223 ORTHO05D008670 8.4e-06 55.1 151 25.8
SMO117G0323 Selaginella moellendorffii HOM05D000088 ORTHO05D001030 8.4e-06 55.1 156 26.3


User provided reference genes

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