Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_22600 Sequoiadendron giganteum HOM05D003351 ORTHO05D003806 4.2e-158 561.2 266 100.0
ATR0680G356 Amborella trichopoda HOM05D003351 ORTHO05D003806 6.8e-84 314.7 240 61.7
Nn6g33439 Nelumbo nucifera HOM05D003351 ORTHO05D003806 1.1e-78 297.4 232 62.1
Lsat_1_v5_gn_7_4420 Lactuca sativa HOM05D003351 ORTHO05D003806 2.5e-78 296.2 224 62.1
THA.LOC104814102 Tarenaya hassleriana HOM05D003351 ORTHO05D003806 4.3e-78 295.4 222 63.1
Actinidia33422 Actinidia chinensis HOM05D003351 ORTHO05D003806 5.6e-78 295.0 222 62.2
Rhsim13G0014400 Rhododendron simsii HOM05D003351 ORTHO05D003806 4.7e-77 292.0 226 62.4
MSTRG.4857 Avicennia marina HOM05D003351 ORTHO05D003806 1.4e-76 290.4 224 61.2
GSVIVG01026913001 Vitis vinifera HOM05D003351 ORTHO05D003806 2.4e-76 289.7 226 60.6
MELO3C006113.2 Cucumis melo HOM05D003351 ORTHO05D003806 5.2e-76 288.5 224 60.7
CsaV3_3G008950 Cucumis sativus L. HOM05D003351 ORTHO05D003806 8.9e-76 287.7 231 59.7
CSS0020727 Camellia sinensis var. sinensis HOM05D003351 ORTHO05D003806 1.2e-75 287.3 236 58.9
HanXRQChr06g0170081 Helianthus annuus HOM05D003351 ORTHO05D003806 1.2e-75 287.3 218 62.4
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 1.5e-75 287.0 233 59.2
BolC5t28825H Brassica oleracea HOM05D003351 ORTHO05D003806 1.5e-75 287.0 233 59.2
Sed0024794 Sechium edule HOM05D003351 ORTHO05D003806 2.6e-75 286.2 233 59.7
SGA_v2.0_scaffold43G16419 Striga asiatica HOM05D003351 ORTHO05D003806 2.6e-75 286.2 222 61.3
Dinv43809 Davidia involucrata HOM05D003351 ORTHO05D003806 4.4e-75 285.4 226 61.1
Nitab4.5_0005277g0030 Nicotiana tabacum HOM05D003351 ORTHO05D003806 4.4e-75 285.4 228 60.5
Aqoxy7G00326 Aquilegia oxysepala HOM05D003351 ORTHO05D003806 5.8e-75 285.0 224 59.4
Thhalv10007689m.g Eutrema salsugineum HOM05D003351 ORTHO05D003806 7.6e-75 284.6 233 58.8
Ciclev10020242m.g Citrus clementina HOM05D003351 ORTHO05D003806 9.9e-75 284.3 240 59.6
Solyc01g094550.3 Solanum lycopersicum HOM05D003351 ORTHO05D003806 9.9e-75 284.3 224 60.3
Sopen01g038360 Solanum pennellii HOM05D003351 ORTHO05D003806 9.9e-75 284.3 224 60.3
TWI59G0062 Tripterygium wilfordii HOM05D003351 ORTHO05D003806 9.9e-75 284.3 224 59.8
AT1G01710 Arabidopsis thaliana HOM05D003351 ORTHO05D003806 1.3e-74 283.9 233 57.5
CiPaw.01G060600 Carya illinoinensis HOM05D003351 ORTHO05D003806 1.7e-74 283.5 222 59.5
Psat0s3577g0160 Pisum sativum HOM05D003351 ORTHO05D003806 1.7e-74 283.5 226 58.8
Sp1g00600 Schrenkiella parvula HOM05D003351 ORTHO05D003806 2.2e-74 283.1 233 58.4
BraA10t42310Z Brassica rapa HOM05D003351 ORTHO05D003806 2.9e-74 282.7 233 58.8
Nitab4.5_0008002g0030 Nicotiana tabacum HOM05D003351 ORTHO05D003806 4.9e-74 282.0 224 59.8
ECA236G4888 Erigeron canadensis HOM05D003351 ORTHO05D003806 6.4e-74 281.6 222 59.0
SalBow5G0930 Salvia bowleyana HOM05D003351 ORTHO05D003806 6.4e-74 281.6 222 59.0
SalBow5G3927 Salvia bowleyana HOM05D003351 ORTHO05D003806 6.4e-74 281.6 222 59.0
EL10Ac1g00424 Beta vulgaris HOM05D003351 ORTHO05D003806 1.1e-73 280.8 225 58.2
DCAR_015970 Daucus carota HOM05D003351 ORTHO05D003806 1.1e-73 280.8 218 59.2
Manes.05G035200 Manihot esculenta HOM05D003351 ORTHO05D003806 1.1e-73 280.8 222 59.5
AL1G10650 Arabidopsis lyrata HOM05D003351 ORTHO05D003806 2.4e-73 279.6 233 57.1
Carub.0001s0050 Capsella rubella HOM05D003351 ORTHO05D003806 2.4e-73 279.6 233 57.1
Cc02_g37920 Coffea canephora HOM05D003351 ORTHO05D003806 4.1e-73 278.9 221 59.3
Cpa.g.sc18.250 Carica papaya HOM05D003351 ORTHO05D003806 5.4e-73 278.5 222 59.5
Solyc01g094530.4 Solanum lycopersicum HOM05D003351 ORTHO05D003806 5.4e-73 278.5 217 60.4
Sopen01g038340 Solanum pennellii HOM05D003351 ORTHO05D003806 5.4e-73 278.5 217 60.4
PGSC0003DMG400000166 Solanum tuberosum HOM05D003351 ORTHO05D003806 5.4e-73 278.5 217 59.9
Gorai.007G099000 Gossypium raimondii HOM05D003351 ORTHO05D003806 7.1e-73 278.1 222 59.5
Medtr7g077400 Medicago truncatula HOM05D003351 ORTHO05D003806 9.2e-73 277.7 224 58.0
CARHR000630 Cardamine hirsuta HOM05D003351 ORTHO05D003806 1.2e-72 277.3 256 53.9
Sc23g0002940 Simmondsia chinensis HOM05D003351 ORTHO05D003806 1.2e-72 277.3 226 58.0
CDE11G0862 Ceratophyllum demersum HOM05D003351 ORTHO05D003806 1.6e-72 276.9 236 55.9
DCAR_006927 Daucus carota HOM05D003351 ORTHO05D003806 1.6e-72 276.9 230 58.7
HPP92_008506 Vanilla planifolia HOM05D003351 ORTHO05D003806 2.1e-72 276.6 234 59.4
Atru.chr5.459 Acer truncatum HOM05D003351 ORTHO05D003806 4.6e-72 275.4 222 59.5
Migut.N01442 Erythranthe guttata HOM05D003351 ORTHO05D003806 7.8e-72 274.6 228 60.1
Gohir.A11G088400 Gossypium hirsutum HOM05D003351 ORTHO05D003806 7.8e-72 274.6 222 59.0
Gohir.D11G092700 Gossypium hirsutum HOM05D003351 ORTHO05D003806 1.3e-71 273.9 222 58.6
Potri.014G083300 Populus trichocarpa HOM05D003351 ORTHO05D003806 1.3e-71 273.9 217 58.5
HanXRQChr04g0121601 Helianthus annuus HOM05D003351 ORTHO05D003806 1.7e-71 273.5 224 56.7
Os04g0558400 Oryza sativa ssp. japonica HOM05D003351 ORTHO05D003806 1.7e-71 273.5 222 60.8
Sabra14G0060600 Salix brachista HOM05D003351 ORTHO05D003806 1.7e-71 273.5 217 58.1
Ah.05g180660 Amaranthus hybridus HOM05D003351 ORTHO05D003806 3.0e-71 272.7 216 60.2
Lj1g0000541 Lotus japonicus HOM05D003351 ORTHO05D003806 3.0e-71 272.7 222 57.2
Sed0019127 Sechium edule HOM05D003351 ORTHO05D003806 3.0e-71 272.7 231 58.0
Aa31LG1G11070 Aethionema arabicum HOM05D003351 ORTHO05D003806 3.9e-71 272.3 231 59.3
Peaxi162Scf00020g00237 Petunia axillaris HOM05D003351 ORTHO05D003806 3.9e-71 272.3 248 54.8
Thecc.01G360000 Theobroma cacao HOM05D003351 ORTHO05D003806 3.9e-71 272.3 231 58.0
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 5.1e-71 271.9 208 60.1
Duzib138G1725 Durio zibethinus HOM05D003351 ORTHO05D003806 5.1e-71 271.9 217 59.9
PSO782G5283 Papaver somniferum HOM05D003351 ORTHO05D003806 5.1e-71 271.9 217 58.5
DCAR_025188 Daucus carota HOM05D003351 ORTHO05D003806 1.1e-70 270.8 224 54.5
PSO478G5134 Papaver somniferum HOM05D003351 ORTHO05D003806 1.1e-70 270.8 217 58.5
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 1.5e-70 270.4 208 59.6
arahy.Tifrunner.gnm1.ann1.UANN5Y Arachis hypogaea HOM05D003351 ORTHO05D003806 1.9e-70 270.0 232 55.6
AUR62022554 Chenopodium quinoa HOM05D003351 ORTHO05D003806 1.9e-70 270.0 222 58.1
Psat0s3577g0040 Pisum sativum HOM05D003351 ORTHO05D003806 1.9e-70 270.0 226 55.8
TPR.G37800 Trifolium pratense HOM05D003351 ORTHO05D003806 1.9e-70 270.0 224 55.8
CANSAT56G4221 Cannabis sativa HOM05D003351 ORTHO05D003806 2.5e-70 269.6 219 57.5
Duzib133G0362 Durio zibethinus HOM05D003351 ORTHO05D003806 2.5e-70 269.6 222 58.6
COL.COLO4_12706 Corchorus olitorius HOM05D003351 ORTHO05D003806 3.3e-70 269.2 217 59.0
Phvul.008G065700 Phaseolus vulgaris HOM05D003351 ORTHO05D003806 3.3e-70 269.2 224 55.8
Sp6g00550 Schrenkiella parvula HOM05D003351 ORTHO05D003806 3.3e-70 269.2 219 57.1
Ca_07910_v3 Cicer arietinum L. HOM05D003351 ORTHO05D003806 5.6e-70 268.5 224 56.7
RcHm_v2.0_Chr1g0355121 Rosa chinensis HOM05D003351 ORTHO05D003806 7.3e-70 268.1 222 59.9
Lj9A583T62 Lonicera japonica HOM05D003351 ORTHO05D003806 9.6e-70 267.7 206 61.2
Glyma.18G232000 Glycine max HOM05D003351 ORTHO05D003806 1.6e-69 266.9 226 55.8
AT4G00520 Arabidopsis thaliana HOM05D003351 ORTHO05D003806 1.1e-68 264.2 236 55.1
Lalb_Chr17g0339681 Lupinus albus HOM05D003351 ORTHO05D003806 1.1e-68 264.2 217 57.1
Eucgr.E00141 Eucalyptus grandis HOM05D003351 ORTHO05D003806 4.0e-68 262.3 231 55.8
QL08p048991 Quercus lobata HOM05D003351 ORTHO05D003806 4.0e-68 262.3 217 57.1
FvH4_7g14192 Fragaria vesca HOM05D003351 ORTHO05D003806 6.9e-68 261.5 223 57.8
FAN06G3044 Fragaria x ananassa HOM05D003351 ORTHO05D003806 6.9e-68 261.5 223 57.8
MD01G1058600 Malus domestica HOM05D003351 ORTHO05D003806 6.9e-68 261.5 222 58.1
Carub.0006s3675 Capsella rubella HOM05D003351 ORTHO05D003806 3.4e-67 259.2 228 55.3
FAN06G4684 Fragaria x ananassa HOM05D003351 ORTHO05D003806 3.4e-67 259.2 236 55.9
Psat0s3832g0080 Pisum sativum HOM05D003351 ORTHO05D003806 4.4e-67 258.8 214 56.5
BcaB01g02157 Brassica carinata HOM05D003351 ORTHO05D003806 1.7e-66 256.9 226 53.5
TPR.G15034 Trifolium pratense HOM05D003351 ORTHO05D003806 1.7e-66 256.9 217 55.3
PSO782G0254 Papaver somniferum HOM05D003351 ORTHO05D003806 2.2e-66 256.5 217 54.8
Psat0s3832g0040 Pisum sativum HOM05D003351 ORTHO05D003806 2.2e-66 256.5 206 58.7
Zm00001eb429310 Zea mays HOM05D003351 ORTHO05D003806 2.9e-66 256.1 249 53.0
Glyma.03G009800 Glycine max HOM05D003351 ORTHO05D003806 3.8e-66 255.8 222 55.0
Glyma.07G071300 Glycine max HOM05D003351 ORTHO05D003806 3.8e-66 255.8 222 54.5
C03p39170 Brassica napus HOM05D003351 ORTHO05D003806 8.4e-66 254.6 219 53.4
Glyma.09G260200 Glycine max HOM05D003351 ORTHO05D003806 1.1e-65 254.2 210 56.7
BcaNung05354 Brassica carinata HOM05D003351 ORTHO05D003806 1.4e-65 253.8 219 53.4
BolC3t16188H Brassica oleracea HOM05D003351 ORTHO05D003806 1.4e-65 253.8 219 53.4
Lalb_Chr19g0126951 Lupinus albus HOM05D003351 ORTHO05D003806 1.4e-65 253.8 218 54.6
Psat4g154520 Pisum sativum HOM05D003351 ORTHO05D003806 1.9e-65 253.4 218 54.6
A03p32150 Brassica napus HOM05D003351 ORTHO05D003806 3.2e-65 252.7 219 53.0
FAN10G4309 Fragaria x ananassa HOM05D003351 ORTHO05D003806 3.2e-65 252.7 223 57.0
PSO478G2412 Papaver somniferum HOM05D003351 ORTHO05D003806 3.2e-65 252.7 218 54.1
PSO782G2636 Papaver somniferum HOM05D003351 ORTHO05D003806 3.2e-65 252.7 217 54.4
Medtr8g030920 Medicago truncatula HOM05D003351 ORTHO05D003806 4.2e-65 252.3 217 54.4
PSO478G3804 Papaver somniferum HOM05D003351 ORTHO05D003806 4.2e-65 252.3 217 53.9
BraA03t12385Z Brassica rapa HOM05D003351 ORTHO05D003806 7.1e-65 251.5 219 53.0
VMungo0331G1844 Vigna mungo HOM05D003351 ORTHO05D003806 3.5e-64 249.2 218 54.6
Phvul.010G098200 Phaseolus vulgaris HOM05D003351 ORTHO05D003806 4.6e-64 248.8 218 54.6
AL6G52960 Arabidopsis lyrata HOM05D003351 ORTHO05D003806 2.3e-63 246.5 211 55.0
TAR374G1710 Trochodendron aralioides HOM05D003351 ORTHO05D003806 6.6e-63 245.0 182 62.1
MD01G1058300 Malus domestica HOM05D003351 ORTHO05D003806 8.7e-63 244.6 222 57.2
Lalb_Chr19g0126941 Lupinus albus HOM05D003351 ORTHO05D003806 2.5e-62 243.0 218 52.3
SMO147G0381 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 3.3e-62 242.7 214 55.1
Manes.01G257800 Manihot esculenta HOM05D003351 ORTHO05D003806 2.1e-61 240.0 218 54.6
AagrBONN_evm.TU.Sc2ySwM_228.998 Anthoceros agrestis HOM05D003351 ORTHO05D003806 4.8e-61 238.8 220 56.4
HanXRQChr04g0121591 Helianthus annuus HOM05D003351 ORTHO05D003806 4.8e-61 238.8 231 51.5
Aa31LG5G470 Aethionema arabicum HOM05D003351 ORTHO05D003806 1.1e-60 237.7 234 50.9
ClCG05G001560 Citrullus lanatus HOM05D003351 ORTHO05D003806 1.1e-60 237.7 235 53.6
C02p38000 Brassica napus HOM05D003351 ORTHO05D003806 3.1e-60 236.1 220 52.3
BolC2t09816H Brassica oleracea HOM05D003351 ORTHO05D003806 3.1e-60 236.1 220 52.3
BcaC03g16040 Brassica carinata HOM05D003351 ORTHO05D003806 6.9e-60 235.0 217 53.0
Prupe.2G169700 Prunus persica HOM05D003351 ORTHO05D003806 1.2e-59 234.2 190 60.0
Pp3c14_7450 Physcomitrium patens HOM05D003351 ORTHO05D003806 2.6e-59 233.0 221 51.6
A02p24120 Brassica napus HOM05D003351 ORTHO05D003806 5.8e-59 231.9 217 52.5
AUR62004348 Chenopodium quinoa HOM05D003351 ORTHO05D003806 5.8e-59 231.9 217 54.4
Thhalv10029128m.g Eutrema salsugineum HOM05D003351 ORTHO05D003806 5.8e-59 231.9 182 58.2
PSO063G6511 Papaver somniferum HOM05D003351 ORTHO05D003806 7.6e-59 231.5 217 51.6
BcaB01g02197 Brassica carinata HOM05D003351 ORTHO05D003806 9.9e-59 231.1 219 51.6
BraA02t07405Z Brassica rapa HOM05D003351 ORTHO05D003806 9.9e-59 231.1 219 51.1
Aa31LG5G460 Aethionema arabicum HOM05D003351 ORTHO05D003806 6.4e-58 228.4 212 51.4
Haze_15492 Corylus avellana HOM05D003351 ORTHO05D003806 1.1e-57 227.6 194 57.7
AagrBONN_evm.TU.Sc2ySwM_228.1010 Anthoceros agrestis HOM05D003351 ORTHO05D003806 3.5e-56 222.6 220 52.3
Pp3c12_25760 Physcomitrium patens HOM05D003351 ORTHO05D003806 1.0e-55 221.1 223 48.4
HanXRQChr06g0170071 Helianthus annuus HOM05D003351 ORTHO05D003806 5.1e-55 218.8 232 50.0
Mapoly0016s0008 Marchantia polymorpha HOM05D003351 ORTHO05D003806 1.1e-54 217.6 234 48.7
Oeu037305.1 Olea europaea HOM05D003351 ORTHO05D003806 2.5e-54 216.5 177 56.5
arahy.Tifrunner.gnm1.ann1.M409IX Arachis hypogaea HOM05D000404 ORTHO05D002003 3.3e-54 216.1 195 53.3
Lj7A514T28 Lonicera japonica HOM05D003351 ORTHO05D003806 6.9e-52 208.4 217 48.4
SMO147G0196 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 1.2e-51 207.6 208 49.0
QL08p048969 Quercus lobata HOM05D003351 ORTHO05D003806 9.9e-51 204.5 339 36.3
BcaC01g06871 Brassica carinata HOM05D003351 ORTHO05D003806 1.3e-50 204.1 231 45.9
CAN.G78.57 Capsicum annuum HOM05D003351 ORTHO05D003806 1.7e-50 203.8 223 46.2
CARHR248670 Cardamine hirsuta HOM05D003351 ORTHO05D003806 8.4e-50 201.4 168 56.5
CiPaw.01G060400 Carya illinoinensis HOM05D003351 ORTHO05D003806 2.7e-48 196.4 230 45.7
Pp3c10_19190 Physcomitrium patens HOM05D003351 ORTHO05D003806 3.0e-47 193.0 233 42.1
unitig_22.g6719 Utricularia gibba HOM05D003351 ORTHO05D003806 8.7e-47 191.4 174 51.7
Ca_23637_v3 Cicer arietinum L. HOM05D003351 ORTHO05D003806 1.9e-46 190.3 225 44.0
Oeu037304.1 Olea europaea HOM05D003351 ORTHO05D003806 1.9e-46 190.3 154 57.1
CAN.G78.58 Capsicum annuum HOM05D003351 ORTHO05D003806 1.1e-44 184.5 137 60.6
vmacro23203 Vaccinium macrocarpon HOM05D003351 ORTHO05D003806 1.0e-42 177.9 297 38.7
Lsat_1_v5_gn_7_4460 Lactuca sativa HOM05D003351 ORTHO05D003806 4.1e-36 156.0 228 38.2
Hund16926 Selenicereus undatus HOM05D003351 ORTHO05D003806 3.4e-35 152.9 161 50.3
arahy.Tifrunner.gnm1.ann1.KX913X Arachis hypogaea HOM05D003351 ORTHO05D003806 8.5e-34 148.3 129 54.3
PRCOL_00006030 Prasinoderma coloniale HOM05D003351 ORTHO05D003806 3.0e-31 139.8 244 37.3
PGSC0003DMG400000200 Solanum tuberosum HOM05D003351 ORTHO05D003806 3.7e-29 132.9 176 43.2
SMO273G0019 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 6.9e-28 128.6 208 38.0
Glyma.18G232200 Glycine max HOM05D003351 ORTHO05D003806 1.2e-27 127.9 113 54.9
QL05p057193 Quercus lobata HOM05D003351 ORTHO05D003806 1.2e-24 117.9 148 43.2
BcaC04g24162 Brassica carinata HOM05D003351 ORTHO05D003806 3.6e-24 116.3 103 50.5
CAN.G78.59 Capsicum annuum HOM05D003351 ORTHO05D003806 3.1e-20 103.2 80 62.5
Cfa022652 Carpinus fangiana HOM05D003351 ORTHO05D003806 4.1e-20 102.8 264 29.9
SHI13440 Sapria himalayana HOM05D003351 ORTHO05D003806 3.4e-19 99.8 87 55.2
Hund27283 Selenicereus undatus HOM05D003351 ORTHO05D003806 2.2e-18 97.1 90 51.1
arahy.Tifrunner.gnm1.ann1.ZVY5TW Arachis hypogaea HOM05D003351 ORTHO05D003806 3.8e-18 96.3 100 49.0
TPR.G14856 Trifolium pratense HOM05D003351 ORTHO05D003806 1.0e-15 88.2 78 53.8
arahy.Tifrunner.gnm1.ann1.6AK6JC Arachis hypogaea HOM05D003351 ORTHO05D003806 1.4e-15 87.8 94 50.0
Lj3g0018331 Lotus japonicus HOM05D003351 ORTHO05D003806 1.4e-15 87.8 78 55.1
PGSC0003DMG400000037 Solanum tuberosum HOM05D003351 ORTHO05D003806 1.8e-15 87.4 68 58.8
Hund27282 Selenicereus undatus HOM05D003351 ORTHO05D003806 1.5e-14 84.3 76 51.3
arahy.Tifrunner.gnm1.ann1.74QZJ8 Arachis hypogaea HOM05D003351 ORTHO05D003806 4.8e-13 79.3 137 40.1
Glyma.18G232100 Glycine max HOM05D003351 ORTHO05D003806 2.4e-12 77.0 71 45.1
SMO147G0373 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 2.0e-11 73.9 171 29.8
HanXRQChr04g0103041 Helianthus annuus HOM05D003351 ORTHO05D003806 6.5e-10 68.9 43 69.8
PSO063G6016 Papaver somniferum HOM05D001810 ORTHO05D005662 1.5e-09 67.8 51 64.7
arahy.Tifrunner.gnm1.ann1.QL50AS Arachis hypogaea HOM05D003351 ORTHO05D003806 3.6e-08 63.2 60 51.7
arahy.Tifrunner.gnm1.ann1.KB1I4I Arachis hypogaea HOM05D003351 ORTHO05D003806 8.8e-07 58.5 106 36.8
Lj7A514T27 Lonicera japonica HOM05D003351 ORTHO05D003806 1.2e-06 58.2 42 59.5
Potri.002G159150 Populus trichocarpa HOM05D003351 ORTHO05D003806 1.2e-06 58.2 96 36.5


User provided reference genes

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