Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_22559 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 4.5e-105 386.3 186 100.0
SEGI_08205 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 7.1e-34 149.8 97 75.3
SEGI_28461 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 2.6e-28 131.3 86 72.1
SEGI_05660 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 1.1e-26 125.9 72 86.1
SEGI_07919 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 2.5e-26 124.8 79 78.5
SEGI_18390 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 1.3e-24 119.0 86 69.8
SEGI_13780 Sequoiadendron giganteum HOM05D001782 ORTHO05D001565 1.5e-20 105.5 71 73.2
SEGI_36939 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 2.6e-20 104.8 69 72.5
SEGI_03438 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 4.5e-20 104.0 84 61.9
SEGI_07366 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 2.9e-19 101.3 73 68.5
SEGI_34583 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 2.9e-19 101.3 73 68.5
Duzib138G1643 Durio zibethinus HOM05D003900 ORTHO05D005009 3.2e-18 97.8 85 51.8
SEGI_06168 Sequoiadendron giganteum HOM05D028618 ORTHO05D005009 5.5e-18 97.1 161 43.5
Dinv43863 Davidia involucrata HOM05D003900 ORTHO05D005009 1.1e-15 89.4 115 40.9
Cc02_g38560 Coffea canephora HOM05D003900 ORTHO05D005009 1.5e-15 89.0 130 39.2
MBI11_g19575_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 1.9e-15 88.6 85 48.2
Rhsim07G0010500 Rhododendron simsii HOM05D003900 ORTHO05D005009 2.5e-15 88.2 85 48.2
Nitab4.5_0010695g0010 Nicotiana tabacum HOM05D003900 ORTHO05D005009 4.3e-15 87.4 83 49.4
Manes.05G029400 Manihot esculenta HOM05D003900 ORTHO05D005009 5.7e-15 87.0 85 49.4
CiPaw.01G067300 Carya illinoinensis HOM05D003900 ORTHO05D005009 7.4e-15 86.7 110 40.9
Thecc.01G352500 Theobroma cacao HOM05D003900 ORTHO05D005009 7.4e-15 86.7 85 48.2
CSS0000093 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 9.7e-15 86.3 85 45.9
CSS0016355 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 9.7e-15 86.3 85 45.9
CiPaw.01G067100 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.3e-14 85.9 110 40.9
QL04p055515 Quercus lobata HOM05D003900 ORTHO05D005009 1.3e-14 85.9 85 44.7
Gohir.D12G110200 Gossypium hirsutum HOM05D003900 ORTHO05D005009 1.6e-14 85.5 85 44.7
Prupe.2G177500 Prunus persica HOM05D003900 ORTHO05D005009 1.6e-14 85.5 83 48.2
Duzib133G1046 Durio zibethinus HOM05D003900 ORTHO05D005009 2.8e-14 84.7 85 45.9
Gorai.008G119500 Gossypium raimondii HOM05D003900 ORTHO05D005009 2.8e-14 84.7 85 44.7
Nitab4.5_0000915g0110 Nicotiana tabacum HOM05D003900 ORTHO05D005009 2.8e-14 84.7 83 48.2
CiPaw.01G067500 Carya illinoinensis HOM05D003900 ORTHO05D005009 3.7e-14 84.3 85 45.9
Gohir.A12G106900 Gossypium hirsutum HOM05D003900 ORTHO05D005009 3.7e-14 84.3 85 44.7
Nn1g01685 Nelumbo nucifera HOM05D003900 ORTHO05D005009 3.7e-14 84.3 85 47.1
Sc01g0003220 Simmondsia chinensis HOM05D003900 ORTHO05D005009 3.7e-14 84.3 85 43.5
GSVIVG01026966001 Vitis vinifera HOM05D003900 ORTHO05D005009 3.7e-14 84.3 85 47.1
Atru.chr5.563 Acer truncatum HOM05D003900 ORTHO05D005009 4.8e-14 84.0 85 50.6
Atru.chr5.581 Acer truncatum HOM05D003900 ORTHO05D005009 4.8e-14 84.0 85 50.6
Carub.0005s2821 Capsella rubella HOM05D003900 ORTHO05D005009 4.8e-14 84.0 83 45.8
PSO384G0446 Papaver somniferum HOM05D003900 ORTHO05D005009 6.3e-14 83.6 83 45.8
Solyc01g095110.4 Solanum lycopersicum HOM05D003900 ORTHO05D005009 6.3e-14 83.6 83 45.8
TAR629G0263 Trochodendron aralioides HOM05D003900 ORTHO05D005009 6.3e-14 83.6 85 44.7
CAN.G78.130 Capsicum annuum HOM05D003900 ORTHO05D005009 8.2e-14 83.2 83 47.0
Sopen01g038900 Solanum pennellii HOM05D003900 ORTHO05D005009 8.2e-14 83.2 83 45.8
CiPaw.01G066800 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.1e-13 82.8 130 35.4
CiPaw.01G067200 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.1e-13 82.8 130 34.6
Peaxi162Scf00020g00155 Petunia axillaris HOM05D003900 ORTHO05D005009 1.4e-13 82.4 83 45.8
Manes.01G252300 Manihot esculenta HOM05D003900 ORTHO05D005009 1.8e-13 82.0 105 44.8
Medtr8g098755 Medicago truncatula HOM05D003900 ORTHO05D005009 1.8e-13 82.0 85 45.9
AL5G43880 Arabidopsis lyrata HOM05D003900 ORTHO05D005009 3.1e-13 81.3 83 44.6
PSO266G0010 Papaver somniferum HOM05D003900 ORTHO05D005009 3.1e-13 81.3 83 45.8
PGSC0003DMG400000195 Solanum tuberosum HOM05D003900 ORTHO05D005009 3.1e-13 81.3 83 44.6
Dinv32521 Davidia involucrata HOM05D003900 ORTHO05D005009 4.1e-13 80.9 82 45.1
Oeu015216.1 Olea europaea HOM05D003900 ORTHO05D005009 4.1e-13 80.9 85 43.5
Actinidia20162 Actinidia chinensis HOM05D003900 ORTHO05D005009 5.3e-13 80.5 86 45.3
ATR0721G158 Amborella trichopoda HOM05D003900 ORTHO05D005009 5.3e-13 80.5 85 47.1
Haze_15564 Corylus avellana HOM05D003900 ORTHO05D005009 6.9e-13 80.1 85 42.4
AT3G61520 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 9.1e-13 79.7 83 43.4
AT5G28370 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 9.1e-13 79.7 83 43.4
AT5G28460 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 9.1e-13 79.7 83 43.4
CARHR171850 Cardamine hirsuta HOM05D003900 ORTHO05D005009 9.1e-13 79.7 83 43.4
Lj7C507T1 Lonicera japonica HOM05D003900 ORTHO05D005009 9.1e-13 79.7 85 43.5
vmacro13229 Vaccinium macrocarpon HOM05D003900 ORTHO05D005009 1.2e-12 79.3 85 44.7
Psat7g005640 Pisum sativum HOM05D003900 ORTHO05D005009 1.5e-12 79.0 85 45.9
SEGI_36951 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 1.5e-12 79.0 85 44.7
CiPaw.01G067400 Carya illinoinensis HOM05D003900 ORTHO05D005009 2.6e-12 78.2 110 37.3
BcaB02g07375 Brassica carinata HOM05D003900 ORTHO05D005009 3.4e-12 77.8 83 41.0
CiPaw.01G066600 Carya illinoinensis HOM05D003900 ORTHO05D005009 3.4e-12 77.8 85 42.4
CANSAT56G3111 Cannabis sativa HOM05D003900 ORTHO05D005009 4.5e-12 77.4 116 37.1
MD07G1131300 Malus domestica HOM05D003900 ORTHO05D005009 7.7e-12 76.6 83 41.0
SGA_v2.0_scaffold4G02283 Striga asiatica HOM05D003900 ORTHO05D005009 7.7e-12 76.6 85 42.4
FvH4_5g03011 Fragaria vesca HOM05D003900 ORTHO05D005009 1.0e-11 76.3 83 42.2
Sabra14G0065500 Salix brachista HOM05D003900 ORTHO05D005009 1.0e-11 76.3 83 41.0
TPR.G2949 Trifolium pratense HOM05D003900 ORTHO05D005009 1.0e-11 76.3 85 42.4
Lj4g0005982 Lotus japonicus HOM05D003900 ORTHO05D005009 1.3e-11 75.9 85 42.4
MD01G1071400 Malus domestica HOM05D003900 ORTHO05D005009 1.3e-11 75.9 154 30.5
CsaV3_7G025780 Cucumis sativus L. HOM05D003900 ORTHO05D005009 1.7e-11 75.5 147 33.3
Phvul.002G326200 Phaseolus vulgaris HOM05D003900 ORTHO05D005009 1.7e-11 75.5 87 43.7
Sp4g28170 Schrenkiella parvula HOM05D003900 ORTHO05D005009 1.7e-11 75.5 83 41.0
SalBow3G3666 Salvia bowleyana HOM05D003900 ORTHO05D005009 2.2e-11 75.1 83 42.2
Aa31LG1G27520 Aethionema arabicum HOM05D003900 ORTHO05D005009 2.9e-11 74.7 85 41.2
SEGI_10842 Sequoiadendron giganteum HOM05D028618 ORTHO05D005009 2.9e-11 74.7 47 74.5
COL.COLO4_12777 Corchorus olitorius HOM05D003900 ORTHO05D005009 3.8e-11 74.3 130 35.4
HanXRQChr04g0120801 Helianthus annuus HOM05D003900 ORTHO05D005009 3.8e-11 74.3 83 43.4
Potri.014G090400 Populus trichocarpa HOM05D003900 ORTHO05D005009 3.8e-11 74.3 83 39.8
RcHm_v2.0_Chr1g0357681 Rosa chinensis HOM05D003900 ORTHO05D005009 3.8e-11 74.3 83 38.6
FvH4_5g32150 Fragaria vesca HOM05D003900 ORTHO05D005009 5.0e-11 73.9 83 39.8
FAN18G1403 Fragaria x ananassa HOM05D003900 ORTHO05D005009 5.0e-11 73.9 83 39.8
RcHm_v2.0_Chr7g0228211 Rosa chinensis HOM05D003900 ORTHO05D005009 5.0e-11 73.9 83 41.0
CDE10G0308 Ceratophyllum demersum HOM05D003834 ORTHO05D004483 6.5e-11 73.6 66 51.5
Lalb_Chr04g0259301 Lupinus albus HOM05D003900 ORTHO05D005009 6.5e-11 73.6 85 42.4
RcHm_v2.0_Chr5g0017031 Rosa chinensis HOM05D003900 ORTHO05D005009 6.5e-11 73.6 83 42.2
Migut.B01798 Erythranthe guttata HOM05D003900 ORTHO05D005009 8.5e-11 73.2 100 37.0
Thhalv10001319m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 8.5e-11 73.2 83 42.2
Thhalv10022571m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 1.1e-10 72.8 83 38.6
MELO3C029134.2 Cucumis melo HOM05D003900 ORTHO05D005009 2.5e-10 71.6 85 42.4
Eucgr.E00097 Eucalyptus grandis HOM05D003900 ORTHO05D005009 2.5e-10 71.6 83 38.6
FAN04G0755 Fragaria x ananassa HOM05D003900 ORTHO05D005009 2.5e-10 71.6 83 39.8
VMungo0251G1173 Vigna mungo HOM05D003900 ORTHO05D005009 2.5e-10 71.6 87 42.5
THA.LOC104817316 Tarenaya hassleriana HOM05D003900 ORTHO05D005009 3.2e-10 71.2 83 38.6
ClCG09G009150 Citrullus lanatus HOM05D003900 ORTHO05D005009 4.2e-10 70.9 118 35.6
DCAR_025213 Daucus carota HOM05D003900 ORTHO05D005009 4.2e-10 70.9 84 45.2
Lsat_1_v5_gn_7_2720 Lactuca sativa HOM05D003900 ORTHO05D005009 4.2e-10 70.9 85 41.2
EL10Ac1g00355 Beta vulgaris HOM05D003900 ORTHO05D005009 5.5e-10 70.5 83 42.2
TWI23G0979 Tripterygium wilfordii HOM05D003900 ORTHO05D005009 5.5e-10 70.5 107 32.7
Ah.15g096610 Amaranthus hybridus HOM05D003900 ORTHO05D005009 7.2e-10 70.1 85 41.2
ECA236G1505 Erigeron canadensis HOM05D003900 ORTHO05D005009 7.2e-10 70.1 85 40.0
PGR142G0969 Punica granatum HOM05D003900 ORTHO05D005009 7.2e-10 70.1 101 37.6
SEGI_14951 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 7.2e-10 70.1 59 62.7
FvH4_7g15360 Fragaria vesca HOM05D003900 ORTHO05D005009 1.2e-09 69.3 121 32.2
FAN01G0431 Fragaria x ananassa HOM05D003900 ORTHO05D005009 2.1e-09 68.6 121 31.4
FAN10G3614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 2.1e-09 68.6 121 31.4
FAN06G0440 Fragaria x ananassa HOM05D003900 ORTHO05D005009 2.7e-09 68.2 83 34.9
FAN18G4460 Fragaria x ananassa HOM05D003900 ORTHO05D005009 2.7e-09 68.2 75 41.3
Sed0017189 Sechium edule HOM05D003900 ORTHO05D005009 2.7e-09 68.2 85 40.0
RcHm_v2.0_Chr7g0228291 Rosa chinensis HOM05D003900 ORTHO05D005009 3.6e-09 67.8 71 43.7
Glyma.16G031800 Glycine max HOM05D003900 ORTHO05D005009 6.1e-09 67.0 85 37.6
FAN03G2211 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.4e-08 65.9 121 30.6
FAN10G1060 Fragaria x ananassa HOM05D003900 ORTHO05D005009 3.0e-08 64.7 121 29.8
SEGI_23216 Sequoiadendron giganteum HOM05D028618 ORTHO05D005009 3.0e-08 64.7 62 51.6
AUR62022618 Chenopodium quinoa HOM05D003900 ORTHO05D005009 8.8e-08 63.2 85 40.0
Cfa003873 Carpinus fangiana HOM05D003900 ORTHO05D005009 1.1e-07 62.8 93 37.6
Cc02_g11890 Coffea canephora HOM05D000891 ORTHO05D000761 1.1e-07 62.8 152 29.6
SEGI_05946 Sequoiadendron giganteum HOM05D003900 ORTHO05D050885 1.1e-07 62.8 87 43.7
SEGI_36720 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 1.1e-07 62.8 124 37.9
Medtr3g088810 Medicago truncatula HOM05D003900 ORTHO05D005009 1.5e-07 62.4 83 39.8
SEGI_27590 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 2.0e-07 62.0 63 47.6
Medtr1g086500 Medicago truncatula HOM05D003039 ORTHO05D009478 2.6e-07 61.6 84 39.3
Cpa.g.sc64.144 Carica papaya HOM05D000424 ORTHO05D000355 7.4e-07 60.1 83 33.7
AUR62004412 Chenopodium quinoa HOM05D003900 ORTHO05D005009 1.3e-06 59.3 83 36.1
TPR.G3049 Trifolium pratense HOM05D003039 ORTHO05D009478 1.3e-06 59.3 84 38.1
BcaB01g06201 Brassica carinata HOM05D007455 ORTHO05D009431 1.7e-06 58.9 84 31.0
FAN06G2614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.7e-06 58.9 115 30.4
A03p00400 Brassica napus HOM05D007455 ORTHO05D009431 2.2e-06 58.5 84 34.5
CSS0021108 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 2.2e-06 58.5 81 35.8
CARHR011930 Cardamine hirsuta HOM05D000891 ORTHO05D000761 2.2e-06 58.5 86 33.7
Phvul.011G069000 Phaseolus vulgaris HOM05D003039 ORTHO05D009478 2.8e-06 58.2 84 36.9
VMungo1127G0634 Vigna mungo HOM05D003039 ORTHO05D009478 2.8e-06 58.2 84 38.1
AL1G29000 Arabidopsis lyrata HOM05D007552 ORTHO05D009397 3.7e-06 57.8 82 39.0
BraA03t09431Z Brassica rapa HOM05D007455 ORTHO05D009431 4.8e-06 57.4 84 33.3
Ca_10260_v3 Cicer arietinum L. HOM05D003039 ORTHO05D009478 4.8e-06 57.4 84 35.7
Thecc.01G038900 Theobroma cacao HOM05D000891 ORTHO05D000761 4.8e-06 57.4 83 34.9
Psat6g159720 Pisum sativum HOM05D003039 ORTHO05D009478 6.3e-06 57.0 84 36.9
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 6.3e-06 57.0 81 35.8
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 8.2e-06 56.6 170 25.3


User provided reference genes

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