Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_22557 Sequoiadendron giganteum HOM05D006679 ORTHO05D008461 2.4e-71 271.9 127 100.0
AagrBONN_evm.TU.Sc2ySwM_368.1297 Anthoceros agrestis HOM05D006679 ORTHO05D008461 2.6e-33 145.6 101 65.3
HanXRQChr09g0267601 Helianthus annuus HOM05D006679 ORTHO05D008461 6.7e-21 104.4 105 49.5
Oeu017172.1 Olea europaea HOM05D006679 ORTHO05D008461 1.9e-20 102.8 95 53.7
Haze_17524 Corylus avellana HOM05D006679 ORTHO05D008461 2.5e-20 102.4 99 48.5
Rhsim06G0049900 Rhododendron simsii HOM05D006679 ORTHO05D008461 4.3e-20 101.7 95 50.5
EL10Ac1g02036 Beta vulgaris HOM05D006679 ORTHO05D008461 1.3e-19 100.1 97 47.4
Gohir.A05G202400 Gossypium hirsutum HOM05D006679 ORTHO05D008461 1.6e-19 99.8 95 50.5
Gohir.D05G205500 Gossypium hirsutum HOM05D006679 ORTHO05D008461 1.6e-19 99.8 95 50.5
Gorai.009G211800 Gossypium raimondii HOM05D006679 ORTHO05D008461 1.6e-19 99.8 95 50.5
Nn1g04857 Nelumbo nucifera HOM05D006679 ORTHO05D008461 1.6e-19 99.8 95 50.5
AUR62013842 Chenopodium quinoa HOM05D006679 ORTHO05D008461 2.2e-19 99.4 93 49.5
AUR62036763 Chenopodium quinoa HOM05D006679 ORTHO05D008461 2.2e-19 99.4 93 49.5
COL.COLO4_26510 Corchorus olitorius HOM05D006679 ORTHO05D008461 2.2e-19 99.4 89 52.8
HanXRQChr14g0439631 Helianthus annuus HOM05D006679 ORTHO05D008461 2.2e-19 99.4 93 50.5
PGR083G0721 Punica granatum HOM05D006679 ORTHO05D008461 2.2e-19 99.4 97 49.5
SEGI_11121 Sequoiadendron giganteum HOM05D006679 ORTHO05D008461 2.2e-19 99.4 93 49.5
Ah.11g040620 Amaranthus hybridus HOM05D006679 ORTHO05D008461 2.8e-19 99.0 99 46.5
Cfa018555 Carpinus fangiana HOM05D006679 ORTHO05D008461 2.8e-19 99.0 95 49.5
Lalb_Chr23g0267181 Lupinus albus HOM05D006679 ORTHO05D008461 2.8e-19 99.0 89 51.7
GSVIVG01009494001 Vitis vinifera HOM05D006679 ORTHO05D008461 2.8e-19 99.0 89 51.7
CSS0029638 Camellia sinensis var. sinensis HOM05D006679 ORTHO05D008461 3.7e-19 98.6 93 50.5
CSS0035367 Camellia sinensis var. sinensis HOM05D006679 ORTHO05D008461 3.7e-19 98.6 93 50.5
Eucgr.F00226 Eucalyptus grandis HOM05D006679 ORTHO05D008461 3.7e-19 98.6 95 49.5
Hund01732 Selenicereus undatus HOM05D006679 ORTHO05D008461 4.8e-19 98.2 95 48.4
Sc15g0006140 Simmondsia chinensis HOM05D006679 ORTHO05D008461 4.8e-19 98.2 95 50.5
Sc15g0006210 Simmondsia chinensis HOM05D006679 ORTHO05D008461 4.8e-19 98.2 95 50.5
SGA_v2.0_scaffold616G53207 Striga asiatica HOM05D006679 ORTHO05D008461 4.8e-19 98.2 95 48.4
Thecc.08G007200 Theobroma cacao HOM05D006679 ORTHO05D008461 4.8e-19 98.2 95 49.5
Ciclev10002686m.g Citrus clementina HOM05D006679 ORTHO05D008461 6.3e-19 97.8 95 49.5
CsaV3_2G027800 Cucumis sativus L. HOM05D006679 ORTHO05D008461 6.3e-19 97.8 95 49.5
Sabra14G0020000 Salix brachista HOM05D006679 ORTHO05D008461 6.3e-19 97.8 95 50.5
unitig_19.g30011 Utricularia gibba HOM05D006679 ORTHO05D008461 6.3e-19 97.8 95 48.4
unitig_8.g5019 Utricularia gibba HOM05D006679 ORTHO05D008461 6.3e-19 97.8 95 48.4
Aqoxy6G01320 Aquilegia oxysepala HOM05D006679 ORTHO05D008461 8.2e-19 97.4 89 50.6
Ca_15948_v3 Cicer arietinum L. HOM05D006679 ORTHO05D008461 8.2e-19 97.4 89 50.6
Lj4A58T19 Lonicera japonica HOM05D006679 ORTHO05D008461 8.2e-19 97.4 89 51.7
Mapoly0014s0177 Marchantia polymorpha HOM05D006679 ORTHO05D008461 8.2e-19 97.4 98 48.0
Medtr3g101740 Medicago truncatula HOM05D006679 ORTHO05D008461 8.2e-19 97.4 89 50.6
MD08G1101500 Malus domestica HOM05D006679 ORTHO05D008461 1.1e-18 97.1 95 49.5
Phvul.009G065200 Phaseolus vulgaris HOM05D006679 ORTHO05D008461 1.1e-18 97.1 89 50.6
TAR376G0298 Trochodendron aralioides HOM05D006679 ORTHO05D008461 1.1e-18 97.1 95 49.5
Lj1g0004984 Lotus japonicus HOM05D006679 ORTHO05D008461 1.4e-18 96.7 95 47.4
VMungo1309G2322 Vigna mungo HOM05D006679 ORTHO05D008461 1.4e-18 96.7 89 50.6
AagrBONN_evm.TU.Sc2ySwM_344.4629 Anthoceros agrestis HOM05D006679 ORTHO05D008461 1.8e-18 96.3 106 46.2
Glyma.04G038900 Glycine max HOM05D006679 ORTHO05D008461 1.8e-18 96.3 89 50.6
Glyma.06G039900 Glycine max HOM05D006679 ORTHO05D008461 1.8e-18 96.3 89 50.6
Potri.014G029200 Populus trichocarpa HOM05D006679 ORTHO05D008461 1.8e-18 96.3 95 49.5
Sed0001224 Sechium edule HOM05D006679 ORTHO05D008461 1.8e-18 96.3 95 47.4
vmacro21521 Vaccinium macrocarpon HOM05D006679 ORTHO05D008461 1.8e-18 96.3 89 50.6
HPP92_013116 Vanilla planifolia HOM05D006679 ORTHO05D008461 1.8e-18 96.3 89 51.7
Zm00001eb244540 Zea mays HOM05D006679 ORTHO05D008461 1.8e-18 96.3 89 52.8
ATR1102G028 Amborella trichopoda HOM05D006679 ORTHO05D008461 2.4e-18 95.9 89 51.7
CANSAT25G3852 Cannabis sativa HOM05D006679 ORTHO05D008461 2.4e-18 95.9 89 49.4
Dinv39316 Davidia involucrata HOM05D006679 ORTHO05D008461 2.4e-18 95.9 95 48.4
Hma1.2p1_0982F.1_g244020 Hydrangea macrophylla HOM05D006679 ORTHO05D008461 2.4e-18 95.9 89 50.6
Aa31LG5G9280 Aethionema arabicum HOM05D006679 ORTHO05D008461 3.1e-18 95.5 95 46.3
ECA232G3126 Erigeron canadensis HOM05D006679 ORTHO05D008461 3.1e-18 95.5 93 49.5
Lsat_1_v5_gn_4_125640 Lactuca sativa HOM05D006679 ORTHO05D008461 3.1e-18 95.5 93 48.4
TPR.G24167 Trifolium pratense HOM05D006679 ORTHO05D008461 3.1e-18 95.5 89 49.4
Actinidia22629 Actinidia chinensis HOM05D006679 ORTHO05D008461 4.1e-18 95.1 89 52.8
FvH4_2g34430 Fragaria vesca HOM05D006679 ORTHO05D008461 4.1e-18 95.1 89 50.6
FAN15G2074 Fragaria x ananassa HOM05D006679 ORTHO05D008461 4.1e-18 95.1 89 50.6
FAN20G3165 Fragaria x ananassa HOM05D006679 ORTHO05D008461 4.1e-18 95.1 89 50.6
FAN24G0165 Fragaria x ananassa HOM05D006679 ORTHO05D008461 4.1e-18 95.1 89 50.6
FAN27G1719 Fragaria x ananassa HOM05D006679 ORTHO05D008461 4.1e-18 95.1 89 50.6
Pp3c10_18810 Physcomitrium patens HOM05D006679 ORTHO05D008461 4.1e-18 95.1 97 48.5
RcHm_v2.0_Chr6g0307941 Rosa chinensis HOM05D006679 ORTHO05D008461 4.1e-18 95.1 89 50.6
DCAR_019453 Daucus carota HOM05D006679 ORTHO05D008461 5.3e-18 94.7 89 50.6
MD15G1082700 Malus domestica HOM05D006679 ORTHO05D008461 5.3e-18 94.7 95 48.4
Psat5g043080 Pisum sativum HOM05D006679 ORTHO05D008461 5.3e-18 94.7 89 49.4
Manes.05G174002 Manihot esculenta HOM05D006679 ORTHO05D008461 6.9e-18 94.4 89 49.4
SalBow7G0072 Salvia bowleyana HOM05D006679 ORTHO05D008461 6.9e-18 94.4 95 48.4
Atru.chr13.694 Acer truncatum HOM05D006679 ORTHO05D008461 9.0e-18 94.0 95 47.4
Cpa.g.sc49.20 Carica papaya HOM05D006679 ORTHO05D008461 9.0e-18 94.0 89 49.4
PSO541G1985 Papaver somniferum HOM05D006679 ORTHO05D008461 9.0e-18 94.0 89 50.6
PSO675G1564 Papaver somniferum HOM05D006679 ORTHO05D008461 9.0e-18 94.0 89 50.6
CAN.G371.2 Capsicum annuum HOM05D006679 ORTHO05D008461 1.2e-17 93.6 89 48.3
Nitab4.5_0003118g0010 Nicotiana tabacum HOM05D006679 ORTHO05D008461 1.2e-17 93.6 89 48.3
MSTRG.1349 Avicennia marina HOM05D006679 ORTHO05D008461 1.5e-17 93.2 93 48.4
Peaxi162Scf00252g00067 Petunia axillaris HOM05D006679 ORTHO05D008461 1.5e-17 93.2 89 48.3
TWI56G1133 Tripterygium wilfordii HOM05D006679 ORTHO05D008461 1.5e-17 93.2 89 49.4
Cc10_g04150 Coffea canephora HOM05D006679 ORTHO05D008461 2.0e-17 92.8 89 50.6
CDE04G2190 Ceratophyllum demersum HOM05D006679 ORTHO05D008461 2.6e-17 92.4 95 48.4
Sp7g22460 Schrenkiella parvula HOM05D006679 ORTHO05D008461 2.6e-17 92.4 95 46.3
AL1G17900 Arabidopsis lyrata HOM05D006679 ORTHO05D008461 3.4e-17 92.0 95 44.2
AT1G07700 Arabidopsis thaliana HOM05D006679 ORTHO05D008461 3.4e-17 92.0 95 44.2
BcaC06g32882 Brassica carinata HOM05D006679 ORTHO05D008461 3.4e-17 92.0 95 45.3
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 3.4e-17 92.0 95 45.3
A03p55310 Brassica napus HOM05D006679 ORTHO05D008461 3.4e-17 92.0 95 45.3
BolC7t45852H Brassica oleracea HOM05D006679 ORTHO05D008461 3.4e-17 92.0 95 45.3
BraA03t14590Z Brassica rapa HOM05D006679 ORTHO05D008461 3.4e-17 92.0 95 45.3
Carub.0001s0705 Capsella rubella HOM05D006679 ORTHO05D008461 3.4e-17 92.0 95 44.2
Migut.C00578 Erythranthe guttata HOM05D006679 ORTHO05D008461 3.4e-17 92.0 95 46.3
Thhalv10026224m.g Eutrema salsugineum HOM05D006679 ORTHO05D008461 5.9e-17 91.3 95 44.2
Solyc04g078910.3 Solanum lycopersicum HOM05D006679 ORTHO05D008461 5.9e-17 91.3 89 47.2
Sopen04g032510 Solanum pennellii HOM05D006679 ORTHO05D008461 5.9e-17 91.3 89 47.2
CARHR007470 Cardamine hirsuta HOM05D006679 ORTHO05D008461 7.6e-17 90.9 95 44.2
PGSC0003DMG400008013 Solanum tuberosum HOM05D006679 ORTHO05D008461 7.6e-17 90.9 89 47.2
arahy.Tifrunner.gnm1.ann1.WQ97CK Arachis hypogaea HOM05D006679 ORTHO05D008461 1.0e-16 90.5 89 48.3
CiPaw.16G043700 Carya illinoinensis HOM05D006679 ORTHO05D008461 1.3e-16 90.1 95 46.3
Pp3c4_3900 Physcomitrium patens HOM05D006679 ORTHO05D008461 1.7e-16 89.7 98 46.9
Os02g0567100 Oryza sativa ssp. japonica HOM05D006679 ORTHO05D008461 1.9e-15 86.3 89 48.3
Nitab4.5_0000287g0350 Nicotiana tabacum HOM05D006679 ORTHO05D008461 7.9e-14 80.9 111 38.7
arahy.Tifrunner.gnm1.ann1.XE9EJK Arachis hypogaea HOM05D006679 ORTHO05D008461 1.1e-10 70.5 89 38.2
Actinidia23275 Actinidia chinensis HOM05D006679 ORTHO05D008461 2.4e-10 69.3 89 46.1
ClCG08G015940 Citrullus lanatus HOM05D006679 ORTHO05D008461 4.1e-10 68.6 80 41.2
Duzib041G0515 Durio zibethinus HOM05D006679 ORTHO05D008461 9.1e-10 67.4 68 48.5
Cre03.g144787 Chlamydomonas reinhardtii HOM05D006679 ORTHO05D008461 2.0e-09 66.2 89 38.2
THA.LOC104803677 Tarenaya hassleriana HOM05D006679 ORTHO05D008461 7.7e-09 64.3 64 50.0
QL02p004799 Quercus lobata HOM05D006679 ORTHO05D008461 6.5e-08 61.2 58 51.7
Prupe.1G435400 Prunus persica HOM05D006679 ORTHO05D008461 8.5e-08 60.8 64 46.9


User provided reference genes

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