Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_22037 Sequoiadendron giganteum HOM05D004088 ORTHO05D004736 0.0e+00 2332.0 1322 100.0
SEGI_23472 Sequoiadendron giganteum HOM05D004088 ORTHO05D004736 1.3e-47 196.4 684 33.8
MBI18_g11295_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 2.6e-43 182.2 846 25.4
PSO541G5923 Papaver somniferum HOM05D004088 ORTHO05D004736 1.1e-36 160.2 788 25.1
Sabra11G0140800 Salix brachista HOM05D004088 ORTHO05D004736 1.8e-36 159.5 906 24.8
MD05G1272700 Malus domestica HOM05D004088 ORTHO05D004736 1.7e-34 152.9 785 24.5
ATR0165G056 Amborella trichopoda HOM05D004088 ORTHO05D004736 3.8e-34 151.8 733 29.5
CANSAT35G2036 Cannabis sativa HOM05D004088 ORTHO05D004736 1.1e-33 150.2 928 24.5
Potri.011G164400 Populus trichocarpa HOM05D004088 ORTHO05D004736 1.4e-33 149.8 923 24.4
Lalb_Chr20g0120071 Lupinus albus HOM05D004088 ORTHO05D004736 1.2e-32 146.7 880 23.6
SGA_v2.0_scaffold106G30673 Striga asiatica HOM05D004088 ORTHO05D004736 1.6e-32 146.4 566 28.4
CsaV3_6G052390 Cucumis sativus L. HOM05D004088 ORTHO05D004736 7.9e-32 144.1 767 24.3
Lalb_Chr18g0058001 Lupinus albus HOM05D004088 ORTHO05D004736 1.0e-31 143.7 946 23.2
Actinidia32361 Actinidia chinensis HOM05D004088 ORTHO05D004736 2.3e-31 142.5 826 24.5
Gohir.A10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 3.9e-31 141.7 771 24.8
Thecc.06G002600 Theobroma cacao HOM05D004088 ORTHO05D004736 6.7e-31 141.0 782 24.2
Phvul.006G128000 Phaseolus vulgaris HOM05D004088 ORTHO05D004736 8.8e-31 140.6 822 23.8
Sed0022554 Sechium edule HOM05D004088 ORTHO05D004736 2.0e-30 139.4 557 26.4
MELO3C007071.2 Cucumis melo HOM05D004088 ORTHO05D004736 3.3e-30 138.7 734 25.2
Duzib235G1173 Durio zibethinus HOM05D004088 ORTHO05D004736 3.3e-30 138.7 823 24.5
Solyc02g069940.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 7.4e-30 137.5 576 27.6
Duzib192G0456 Durio zibethinus HOM05D004088 ORTHO05D004736 9.7e-30 137.1 819 23.6
PSO675G0514 Papaver somniferum HOM05D004088 ORTHO05D004736 9.7e-30 137.1 819 28.3
Peaxi162Scf00395g00111 Petunia axillaris HOM05D004088 ORTHO05D004736 9.7e-30 137.1 582 27.8
Rhsim13G0121800 Rhododendron simsii HOM05D004088 ORTHO05D004736 9.7e-30 137.1 558 30.6
Sed0022133 Sechium edule HOM05D004088 ORTHO05D004736 2.8e-29 135.6 813 23.0
Manes.14G123600 Manihot esculenta HOM05D004088 ORTHO05D004736 8.2e-29 134.0 567 26.1
MD10G1252800 Malus domestica HOM05D004088 ORTHO05D004736 1.4e-28 133.3 770 24.8
Hma1.2p1_0067F.1_g036970 Hydrangea macrophylla HOM05D004088 ORTHO05D004736 1.8e-28 132.9 561 26.6
Manes.06G068100 Manihot esculenta HOM05D004088 ORTHO05D004736 1.8e-28 132.9 783 28.4
Aqoxy1G01578 Aquilegia oxysepala HOM05D004088 ORTHO05D004736 2.4e-28 132.5 729 25.9
Glyma.09G024600 Glycine max HOM05D004088 ORTHO05D004736 6.9e-28 131.0 806 23.6
FvH4_3g10170 Fragaria vesca HOM05D004088 ORTHO05D004736 9.1e-28 130.6 765 23.3
Atru.chr10.842 Acer truncatum HOM05D004088 ORTHO05D004736 1.2e-27 130.2 788 23.6
Prupe.4G090700 Prunus persica HOM05D004088 ORTHO05D004736 2.0e-27 129.4 859 23.9
CiPaw.10G109300 Carya illinoinensis HOM05D004088 ORTHO05D004736 3.4e-27 128.6 758 24.9
CDE03G0099 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 3.4e-27 128.6 787 22.4
RcHm_v2.0_Chr5g0016081 Rosa chinensis HOM05D004088 ORTHO05D004736 3.4e-27 128.6 759 23.8
CSS0022324 Camellia sinensis var. sinensis HOM05D004088 ORTHO05D004736 7.7e-27 127.5 579 24.5
Cfa000808 Carpinus fangiana HOM05D004088 ORTHO05D004736 7.7e-27 127.5 825 23.9
COL.COLO4_26840 Corchorus olitorius HOM05D004088 ORTHO05D004736 1.0e-26 127.1 824 23.5
Sopen02g019080 Solanum pennellii HOM05D004088 ORTHO05D004736 1.0e-26 127.1 820 23.7
Actinidia33710 Actinidia chinensis HOM05D004088 ORTHO05D004736 1.3e-26 126.7 802 23.7
PGSC0003DMG400021120 Solanum tuberosum HOM05D004088 ORTHO05D004736 1.3e-26 126.7 562 26.2
DCAR_003851 Daucus carota HOM05D004088 ORTHO05D004736 2.9e-26 125.6 854 23.9
Lj2C329T10 Lonicera japonica HOM05D004088 ORTHO05D004736 2.9e-26 125.6 567 25.4
TWI18G0713 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 3.8e-26 125.2 917 24.0
Potri.001G466800 Populus trichocarpa HOM05D004088 ORTHO05D004736 5.0e-26 124.8 790 24.6
Medtr2g030300 Medicago truncatula HOM05D004088 ORTHO05D004736 1.1e-25 123.6 918 23.7
BcaB07g32689 Brassica carinata HOM05D004088 ORTHO05D004736 3.2e-25 122.1 593 25.5
TWI75G0217 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 3.2e-25 122.1 581 26.5
MBI02_g32065_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 4.2e-25 121.7 799 27.8
Migut.H01326 Erythranthe guttata HOM05D004088 ORTHO05D004736 7.2e-25 120.9 620 29.0
Cc09_g07900 Coffea canephora HOM05D004088 ORTHO05D004736 9.4e-25 120.6 579 25.2
MSTRG.14799 Avicennia marina HOM05D004088 ORTHO05D004736 1.6e-24 119.8 604 24.0
FAN16G0404 Fragaria x ananassa HOM05D004088 ORTHO05D004736 2.1e-24 119.4 775 22.6
MSTRG.13273 Avicennia marina HOM05D004088 ORTHO05D004736 2.7e-24 119.0 561 26.0
BcaB07g32691 Brassica carinata HOM05D004088 ORTHO05D004736 2.7e-24 119.0 566 25.1
A09p35910 Brassica napus HOM05D004088 ORTHO05D004736 2.7e-24 119.0 564 25.0
Nn3g20183 Nelumbo nucifera HOM05D004088 ORTHO05D004736 3.6e-24 118.6 832 22.2
CiPaw.09G141900 Carya illinoinensis HOM05D004088 ORTHO05D004736 4.7e-24 118.2 737 23.6
AUR62027558 Chenopodium quinoa HOM05D004088 ORTHO05D004736 4.7e-24 118.2 561 25.8
FAN11G0925 Fragaria x ananassa HOM05D004088 ORTHO05D004736 4.7e-24 118.2 749 22.8
FAN21G0524 Fragaria x ananassa HOM05D004088 ORTHO05D004736 4.7e-24 118.2 820 22.1
arahy.Tifrunner.gnm1.ann1.845J24 Arachis hypogaea HOM05D004088 ORTHO05D004736 6.1e-24 117.9 838 24.1
Dinv10790 Davidia involucrata HOM05D004088 ORTHO05D004736 1.0e-23 117.1 937 21.6
PGSC0003DMG400028032 Solanum tuberosum HOM05D004088 ORTHO05D004736 1.8e-23 116.3 562 24.4
SGA_v2.0_scaffold51G18657 Striga asiatica HOM05D004088 ORTHO05D007693 2.3e-23 115.9 577 25.6
Ca_00845_v3 Cicer arietinum L. HOM05D004088 ORTHO05D004736 6.7e-23 114.4 847 23.0
Sopen02g006710 Solanum pennellii HOM05D004088 ORTHO05D004736 6.7e-23 114.4 556 23.7
arahy.Tifrunner.gnm1.ann1.JZ5PNZ Arachis hypogaea HOM05D004088 ORTHO05D004736 1.1e-22 113.6 839 24.3
Ciclev10014183m.g Citrus clementina HOM05D004088 ORTHO05D004736 1.1e-22 113.6 829 25.3
Glyma.15G130600 Glycine max HOM05D004088 ORTHO05D004736 1.1e-22 113.6 814 25.8
ClCG01G025190 Citrullus lanatus HOM05D004088 ORTHO05D004736 2.0e-22 112.8 860 23.5
Sc24g0002610 Simmondsia chinensis HOM05D004088 ORTHO05D004736 3.3e-22 112.1 590 24.2
CAN.G79.31 Capsicum annuum HOM05D004088 ORTHO05D004736 4.4e-22 111.7 571 25.7
TAR627G0836 Trochodendron aralioides HOM05D004088 ORTHO05D004736 1.3e-21 110.2 157 40.8
FAN25G3211 Fragaria x ananassa HOM05D004088 ORTHO05D004736 2.2e-21 109.4 595 24.0
Gohir.D10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 3.7e-21 108.6 771 22.4
BcaB07g32665 Brassica carinata HOM05D004088 ORTHO05D004736 8.2e-21 107.5 563 23.1
CDE06G1544 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 8.2e-21 107.5 110 48.2
GSVIVG01021660001 Vitis vinifera HOM05D004088 ORTHO05D004736 8.2e-21 107.5 838 22.0
Lj6g0019238 Lotus japonicus HOM05D004088 ORTHO05D004736 1.1e-20 107.1 841 27.1
Carub.0001s2877 Capsella rubella HOM05D004088 ORTHO05D004736 1.8e-20 106.3 618 25.1
Haze_05860 Corylus avellana HOM05D004088 ORTHO05D004736 1.8e-20 106.3 799 23.7
Haze_05865 Corylus avellana HOM05D004088 ORTHO05D004736 1.8e-20 106.3 799 23.7
EL10Ac8g19551 Beta vulgaris HOM05D004088 ORTHO05D004736 4.1e-20 105.1 912 23.8
HanXRQChr14g0430221 Helianthus annuus HOM05D004088 ORTHO05D004736 4.1e-20 105.1 195 33.8
Sp1g26400 Schrenkiella parvula HOM05D004088 ORTHO05D004736 4.1e-20 105.1 573 24.8
RcHm_v2.0_Chr5g0016211 Rosa chinensis HOM05D004088 ORTHO05D004736 7.0e-20 104.4 759 21.6
TPR.G26329 Trifolium pratense HOM05D004088 ORTHO05D004736 7.0e-20 104.4 594 23.1
Eucgr.E02503 Eucalyptus grandis HOM05D004088 ORTHO05D004736 9.1e-20 104.0 899 23.4
Psat1g167360 Pisum sativum HOM05D004088 ORTHO05D004736 9.1e-20 104.0 907 22.2
HPP92_017711 Vanilla planifolia HOM05D004088 ORTHO05D004736 1.6e-19 103.2 785 21.8
Ah.14g086140 Amaranthus hybridus HOM05D002312 ORTHO05D006455 2.6e-19 102.4 570 26.0
C05p29550 Brassica napus HOM05D004088 ORTHO05D004736 3.5e-19 102.1 552 24.8
BcaC05g27074 Brassica carinata HOM05D004088 ORTHO05D004736 4.5e-19 101.7 552 24.6
BolC5t31686H Brassica oleracea HOM05D004088 ORTHO05D004736 4.5e-19 101.7 552 24.6
BraA09t39116Z Brassica rapa HOM05D004088 ORTHO05D004736 5.9e-19 101.3 591 23.4
Dinv01743 Davidia involucrata HOM05D004088 ORTHO05D004736 1.0e-18 100.5 119 45.4
VMungo0540G1975 Vigna mungo HOM05D004088 ORTHO05D004736 1.7e-18 99.8 803 26.5
Oeu058484.1 Olea europaea HOM05D004088 ORTHO05D004736 2.9e-18 99.0 547 25.6
Nitab4.5_0001225g0110 Nicotiana tabacum HOM05D004088 ORTHO05D004736 8.5e-18 97.4 571 31.7
Pp3c15_60 Physcomitrium patens HOM05D004088 ORTHO05D004736 1.5e-17 96.7 194 32.0
Carub.0004s1642 Capsella rubella HOM05D004088 ORTHO05D004736 2.5e-17 95.9 733 24.0
Os09g0133800 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 1.2e-16 93.6 563 23.8
Nitab4.5_0004734g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 2.1e-16 92.8 480 25.6
CDE12G0038 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 2.7e-16 92.4 213 32.9
TAR629G1981 Trochodendron aralioides HOM05D004088 ORTHO05D004736 6.1e-16 91.3 946 21.2
Aqoxy1G01241 Aquilegia oxysepala HOM05D007562 ORTHO05D009721 8.0e-16 90.9 830 21.6
Sp4g17030 Schrenkiella parvula HOM05D004088 ORTHO05D004736 8.0e-16 90.9 729 29.6
Sabra16G0316600 Salix brachista HOM05D004088 ORTHO05D004736 1.4e-15 90.1 778 21.9
unitig_61.g26083 Utricularia gibba HOM05D004088 ORTHO05D004736 1.4e-15 90.1 563 23.6
Aa31LG10G6600 Aethionema arabicum HOM05D004088 ORTHO05D004736 1.8e-15 89.7 925 23.4
Prupe.6G009100 Prunus persica HOM05D004088 ORTHO05D004736 1.8e-15 89.7 222 31.5
THA.LOC104814348 Tarenaya hassleriana HOM05D004088 ORTHO05D004736 1.8e-15 89.7 744 25.1
Solyc02g024000.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 2.3e-15 89.4 551 22.5
TAR629G1307 Trochodendron aralioides HOM05D007562 ORTHO05D009721 4.0e-15 88.6 155 38.7
SHI20695 Sapria himalayana HOM05D004088 ORTHO05D004736 2.6e-14 85.9 179 34.1
TAR627G0400 Trochodendron aralioides HOM05D004088 ORTHO05D004736 4.4e-14 85.1 407 25.3
HPP92_026552 Vanilla planifolia HOM05D004088 ORTHO05D004736 4.4e-14 85.1 558 25.4
MBI02_g16954_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 5.7e-14 84.7 616 23.1
SMO351G0272 Selaginella moellendorffii HOM05D004088 ORTHO05D004736 5.7e-14 84.7 113 44.2
Aa31LG6G11780 Aethionema arabicum HOM05D004088 ORTHO05D004736 1.3e-13 83.6 178 33.1
MBI02_g32067_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 1.7e-13 83.2 572 22.9
vmacro03381 Vaccinium macrocarpon HOM05D004088 ORTHO05D004736 2.2e-13 82.8 536 29.5
Zm00001eb136010 Zea mays HOM05D004088 ORTHO05D004736 2.2e-13 82.8 578 24.6
BolC3t14642H Brassica oleracea HOM05D004088 ORTHO05D004736 2.8e-13 82.4 904 22.3
AagrBONN_evm.TU.Sc2ySwM_117.446 Anthoceros agrestis HOM05D004088 ORTHO05D004736 4.8e-13 81.6 109 39.4
CDE04G2970 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 4.8e-13 81.6 584 24.3
Prupe.2G214000 Prunus persica HOM05D007562 ORTHO05D009721 2.4e-12 79.3 119 36.1
RcHm_v2.0_Chr1g0363431 Rosa chinensis HOM05D007562 ORTHO05D009721 2.4e-12 79.3 97 41.2
AUR62035797 Chenopodium quinoa HOM05D004088 ORTHO05D004736 4.1e-12 78.6 770 21.6
FAN01G2123 Fragaria x ananassa HOM05D007562 ORTHO05D009721 4.1e-12 78.6 139 37.4
Os04g0521600 Oryza sativa ssp. japonica HOM05D007562 ORTHO05D004736 4.1e-12 78.6 105 39.0
HPP92_017740 Vanilla planifolia HOM05D004088 ORTHO05D000818 1.2e-11 77.0 215 33.0
Glyma.16G154800 Glycine max HOM05D007562 ORTHO05D009721 1.6e-11 76.6 70 54.3
Sc20g0001880 Simmondsia chinensis HOM05D007562 ORTHO05D009721 1.6e-11 76.6 144 34.0
Zm00001eb059840 Zea mays HOM05D004088 ORTHO05D004736 1.6e-11 76.6 762 22.6
FAN03G1079 Fragaria x ananassa HOM05D007562 ORTHO05D009721 2.7e-11 75.9 139 36.0
FvH4_7g19620 Fragaria vesca HOM05D007562 ORTHO05D009721 3.5e-11 75.5 138 34.8
Gorai.011G004700 Gossypium raimondii HOM05D004088 ORTHO05D004736 4.5e-11 75.1 764 22.0
Manes.07G100522 Manihot esculenta HOM05D007562 ORTHO05D004736 4.5e-11 75.1 65 52.3
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 4.5e-11 75.1 188 31.9
Zm00001eb261820 Zea mays HOM05D004088 ORTHO05D004736 4.5e-11 75.1 553 21.9
Cfa021509 Carpinus fangiana HOM05D007562 ORTHO05D009721 5.9e-11 74.7 119 37.0
Haze_16895 Corylus avellana HOM05D007562 ORTHO05D009721 5.9e-11 74.7 105 39.0
Dinv11774 Davidia involucrata HOM05D007562 ORTHO05D009721 7.7e-11 74.3 109 39.4
CARHR128890 Cardamine hirsuta HOM05D004088 ORTHO05D004736 1.3e-10 73.6 602 29.1
Os12g0612300 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 2.2e-10 72.8 732 20.9
Rhsim09G0152200 Rhododendron simsii HOM05D007562 ORTHO05D009721 2.2e-10 72.8 98 40.8
Thecc.10G073300 Theobroma cacao HOM05D007562 ORTHO05D009721 2.2e-10 72.8 117 36.8
Cpa.g.sc1123.1 Carica papaya HOM05D004088 ORTHO05D004736 5.0e-10 71.6 423 23.9
MD07G1174900 Malus domestica HOM05D007562 ORTHO05D009721 8.5e-10 70.9 88 43.2
Prupe.6G066700 Prunus persica HOM05D004088 ORTHO05D004736 8.5e-10 70.9 533 21.8
Zm00001eb420620 Zea mays HOM05D004088 ORTHO05D004736 1.1e-09 70.5 179 30.7
Atru.chr12.774 Acer truncatum HOM05D007562 ORTHO05D009721 1.5e-09 70.1 899 21.0
FAN10G0414 Fragaria x ananassa HOM05D007562 ORTHO05D009721 1.5e-09 70.1 92 43.5
Potri.010G222200 Populus trichocarpa HOM05D007562 ORTHO05D009721 1.5e-09 70.1 223 29.6
RcHm_v2.0_Chr5g0016261 Rosa chinensis HOM05D004088 ORTHO05D004736 3.2e-09 68.9 358 24.3
Lj2g0025537 Lotus japonicus HOM05D007562 ORTHO05D009721 4.2e-09 68.6 64 54.7
Gohir.D06G174900 Gossypium hirsutum HOM05D007562 ORTHO05D009721 5.5e-09 68.2 88 38.6
Gorai.010G205300 Gossypium raimondii HOM05D007562 ORTHO05D009721 5.5e-09 68.2 88 38.6
ClCG05G020990 Citrullus lanatus HOM05D007562 ORTHO05D009721 1.2e-08 67.0 102 38.2
Zm00001eb299950 Zea mays HOM05D004088 ORTHO05D004736 1.2e-08 67.0 827 19.2
Duzib114G0316 Durio zibethinus HOM05D007562 ORTHO05D009721 2.1e-08 66.2 138 33.3
Gohir.A06G167500 Gossypium hirsutum HOM05D007562 ORTHO05D009721 3.6e-08 65.5 100 34.0
Ciclev10034000m.g Citrus clementina HOM05D007562 ORTHO05D004736 4.7e-08 65.1 69 47.8
Zm00001eb246510 Zea mays HOM05D004088 ORTHO05D004736 4.7e-08 65.1 229 27.5
MBI10_g06724_MAGBIO Magnolia biondii HOM05D007562 ORTHO05D009721 6.1e-08 64.7 1304 19.1
Nn4g24611 Nelumbo nucifera HOM05D007562 ORTHO05D009721 6.1e-08 64.7 158 27.8
arahy.Tifrunner.gnm1.ann1.264L58 Arachis hypogaea HOM05D007562 ORTHO05D009721 1.0e-07 63.9 65 49.2
Nitab4.5_0001583g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 1.0e-07 63.9 654 22.6
Os07g0147800 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 1.0e-07 63.9 735 19.9
Hund03678 Selenicereus undatus HOM05D004088 ORTHO05D010054 1.4e-07 63.5 34 82.4
Ca_04680_v3 Cicer arietinum L. HOM05D007562 ORTHO05D009721 1.8e-07 63.2 598 22.1
Mapoly0009s0092 Marchantia polymorpha HOM05D004088 ORTHO05D004736 5.2e-07 61.6 220 29.1
Os03g0784500 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 6.8e-07 61.2 240 26.7
Cpa.g.sc53.79 Carica papaya HOM05D007562 ORTHO05D009721 8.8e-07 60.8 64 51.6
PGR142G4136 Punica granatum HOM05D007562 ORTHO05D009721 2.0e-06 59.7 121 32.2
Sed0017940 Sechium edule HOM05D007562 ORTHO05D009721 4.4e-06 58.5 89 37.1
AT2G34730 Arabidopsis thaliana HOM05D004088 ORTHO05D004736 7.5e-06 57.8 742 21.4


User provided reference genes

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