Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_21982 Sequoiadendron giganteum HOM05D005764 ORTHO05D006600 8.0e-80 300.4 159 100.0
TAR362G1049 Trochodendron aralioides HOM05D005764 ORTHO05D006600 9.0e-15 84.3 121 35.5
Ciclev10033858m.g Citrus clementina HOM05D005764 ORTHO05D006600 1.2e-14 84.0 99 39.4
ATR0317G130 Amborella trichopoda HOM05D005764 ORTHO05D006600 1.5e-14 83.6 96 38.5
MD14G1148300 Malus domestica HOM05D005764 ORTHO05D006600 1.3e-13 80.5 128 31.2
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 1.7e-13 80.1 102 37.3
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 2.9e-13 79.3 128 30.5
Dinv13731 Davidia involucrata HOM05D005764 ORTHO05D006600 1.1e-12 77.4 134 29.9
FvH4_5g09340 Fragaria vesca HOM05D005764 ORTHO05D006600 1.4e-12 77.0 102 36.3
FAN18G2453 Fragaria x ananassa HOM05D005764 ORTHO05D006600 1.9e-12 76.6 102 36.3
TAR633G1425 Trochodendron aralioides HOM05D005764 ORTHO05D006600 1.9e-12 76.6 119 33.6
AUR62009526 Chenopodium quinoa HOM05D005764 ORTHO05D006600 5.4e-12 75.1 120 35.8
AUR62034761 Chenopodium quinoa HOM05D005764 ORTHO05D006600 7.1e-12 74.7 120 35.8
AUR62041690 Chenopodium quinoa HOM05D005764 ORTHO05D006600 7.1e-12 74.7 120 35.8
CDE05G2510 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 9.3e-12 74.3 99 36.4
PSO017G0179 Papaver somniferum HOM05D005764 ORTHO05D006600 9.3e-12 74.3 139 33.1
Haze_07107 Corylus avellana HOM05D005764 ORTHO05D006600 2.1e-11 73.2 101 33.7
Atru.chr6.1906 Acer truncatum HOM05D005764 ORTHO05D006600 2.7e-11 72.8 128 33.6
RcHm_v2.0_Chr2g0162681 Rosa chinensis HOM05D005764 ORTHO05D006600 4.6e-11 72.0 122 32.8
RcHm_v2.0_Chr7g0188811 Rosa chinensis HOM05D005764 ORTHO05D006600 6.0e-11 71.6 103 35.0
Ciclev10010938m.g Citrus clementina HOM05D005764 ORTHO05D006600 3.0e-10 69.3 96 33.3
Manes.06G126050 Manihot esculenta HOM05D005764 ORTHO05D006600 3.9e-10 68.9 108 31.5
Sed0013038 Sechium edule HOM05D005764 ORTHO05D006600 3.9e-10 68.9 115 29.6
PGR042G2810 Punica granatum HOM05D005764 ORTHO05D006600 6.6e-10 68.2 94 35.1
QL04p006829 Quercus lobata HOM05D000056 ORTHO05D000019 6.6e-10 68.2 101 32.7
QL04p061529 Quercus lobata HOM05D005764 ORTHO05D006600 6.6e-10 68.2 101 32.7
QL11p027136 Quercus lobata HOM05D005764 ORTHO05D006600 8.7e-10 67.8 119 30.3
Rhsim06G0177300 Rhododendron simsii HOM05D005764 ORTHO05D006600 4.3e-09 65.5 127 28.3
Ah.11g046810 Amaranthus hybridus HOM05D005764 ORTHO05D006600 5.6e-09 65.1 99 36.4
Duzib205G1181 Durio zibethinus HOM05D005764 ORTHO05D006600 7.3e-09 64.7 91 33.0
Gorai.003G116400 Gossypium raimondii HOM05D005764 ORTHO05D006600 7.3e-09 64.7 121 28.1
Dinv21306 Davidia involucrata HOM05D005764 ORTHO05D006600 2.1e-08 63.2 122 27.0
vmacro12075 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 3.6e-08 62.4 139 25.9
Lj1C797T15 Lonicera japonica HOM05D005764 ORTHO05D006600 4.8e-08 62.0 118 27.1
Lj1C797T16 Lonicera japonica HOM05D005764 ORTHO05D006600 4.8e-08 62.0 118 27.1
Sc04g0000230 Simmondsia chinensis HOM05D005764 ORTHO05D006600 6.2e-08 61.6 96 32.3
ClCG02G014020 Citrullus lanatus HOM05D005764 ORTHO05D006600 8.1e-08 61.2 123 24.4
GSVIVG01030107001 Vitis vinifera HOM05D005764 ORTHO05D006600 8.1e-08 61.2 122 29.5
Gohir.A03G056500 Gossypium hirsutum HOM05D005764 ORTHO05D006600 1.4e-07 60.5 121 26.4
CSS0045653 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 1.8e-07 60.1 127 28.3
CsaV3_5G006140 Cucumis sativus L. HOM05D005764 ORTHO05D006600 1.8e-07 60.1 97 26.8
Dinv18433 Davidia involucrata HOM05D005764 ORTHO05D006600 2.4e-07 59.7 105 33.3
Actinidia07859 Actinidia chinensis HOM05D005764 ORTHO05D006600 3.1e-07 59.3 147 24.5
QL04p067861 Quercus lobata HOM05D005764 ORTHO05D006600 4.0e-07 58.9 116 27.6
CSS0031853 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 6.9e-07 58.2 121 27.3
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 6.9e-07 58.2 96 34.4
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 6.9e-07 58.2 104 31.7
Aqoxy7G02956 Aquilegia oxysepala HOM05D005764 ORTHO05D006600 9.0e-07 57.8 105 31.4
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 9.0e-07 57.8 135 29.6
MELO3C011746.2 Cucumis melo HOM05D005764 ORTHO05D006600 2.6e-06 56.2 97 26.8
Aa31LG5G12250 Aethionema arabicum HOM05D006931 ORTHO05D008782 3.4e-06 55.8 108 29.6
RcHm_v2.0_Chr1g0325241 Rosa chinensis HOM05D005764 ORTHO05D006600 4.5e-06 55.5 100 32.0
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 5.8e-06 55.1 121 28.9


User provided reference genes

Program Settings