Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.4e-153 545.4 271 100.0
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 4.2e-57 225.7 283 50.9
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.4e-47 194.1 286 46.2
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 9.5e-41 171.4 247 44.5
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 3.6e-32 142.9 286 36.4
SEGI_33896 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.2e-16 91.3 202 38.1
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 4.2e-12 76.3 63 54.0
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 4.2e-12 76.3 45 71.1
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 5.4e-12 75.9 69 49.3
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 7.1e-12 75.5 45 71.1
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 7.1e-12 75.5 60 56.7
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 7.1e-12 75.5 45 71.1
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 9.3e-12 75.1 70 55.7
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 1.2e-11 74.7 48 66.7
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 1.2e-11 74.7 48 66.7
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 1.2e-11 74.7 48 66.7
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 1.2e-11 74.7 45 71.1
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 1.2e-11 74.7 42 76.2
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 1.2e-11 74.7 42 76.2
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 1.2e-11 74.7 42 76.2
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.2e-11 74.7 146 35.6
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 1.6e-11 74.3 45 68.9
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 1.6e-11 74.3 45 68.9
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 1.6e-11 74.3 45 68.9
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 1.6e-11 74.3 45 68.9
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 1.6e-11 74.3 45 68.9
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 1.6e-11 74.3 41 75.6
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 1.6e-11 74.3 41 75.6
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 2.1e-11 73.9 43 74.4
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 2.1e-11 73.9 45 68.9
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 2.1e-11 73.9 45 68.9
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 2.1e-11 73.9 45 68.9
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 2.1e-11 73.9 45 68.9
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 2.1e-11 73.9 56 57.1
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 2.1e-11 73.9 52 67.3
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 2.7e-11 73.6 42 73.8
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 2.7e-11 73.6 55 61.8
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 2.7e-11 73.6 50 64.0
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 3.5e-11 73.2 152 34.9
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 3.5e-11 73.2 64 53.1
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 3.5e-11 73.2 45 68.9
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 4.6e-11 72.8 53 62.3
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 4.6e-11 72.8 61 54.1
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 4.6e-11 72.8 95 42.1
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 4.6e-11 72.8 42 73.8
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 4.6e-11 72.8 42 73.8
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 6.0e-11 72.4 154 38.3
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 6.0e-11 72.4 109 39.4
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 6.0e-11 72.4 89 44.9
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 6.0e-11 72.4 112 39.3
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 7.8e-11 72.0 45 66.7
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 7.8e-11 72.0 45 66.7
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 7.8e-11 72.0 45 66.7
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 7.8e-11 72.0 39 76.9
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 7.8e-11 72.0 112 39.3
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 1.0e-10 71.6 42 73.8
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 1.0e-10 71.6 56 58.9
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 1.0e-10 71.6 61 55.7
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 1.0e-10 71.6 61 55.7
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 1.0e-10 71.6 43 69.8
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 1.0e-10 71.6 55 58.2
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.0e-10 71.6 42 71.4
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.0e-10 71.6 130 38.5
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 1.3e-10 71.2 104 38.5
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.3e-10 71.2 53 64.2
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 1.3e-10 71.2 53 64.2
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 1.3e-10 71.2 74 48.6
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 1.3e-10 71.2 59 55.9
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 1.3e-10 71.2 42 71.4
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 1.3e-10 71.2 42 73.8
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.3e-10 71.2 39 76.9
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 1.3e-10 71.2 45 66.7
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 1.7e-10 70.9 39 76.9
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.7e-10 70.9 70 50.0
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.7e-10 70.9 42 71.4
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 1.7e-10 70.9 40 75.0
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.7e-10 70.9 42 71.4
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 1.7e-10 70.9 57 59.6
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 1.7e-10 70.9 57 56.1
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.7e-10 70.9 42 71.4
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 2.3e-10 70.5 93 40.9
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 2.3e-10 70.5 97 47.4
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 2.3e-10 70.5 42 71.4
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 2.3e-10 70.5 42 71.4
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 2.3e-10 70.5 42 71.4
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 2.3e-10 70.5 42 71.4
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 2.3e-10 70.5 42 71.4
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 2.3e-10 70.5 42 71.4
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 2.3e-10 70.5 42 71.4
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 2.3e-10 70.5 42 71.4
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 2.3e-10 70.5 42 71.4
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 2.3e-10 70.5 298 28.5
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 2.3e-10 70.5 43 69.8
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 2.3e-10 70.5 42 71.4
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 2.3e-10 70.5 42 71.4
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 2.3e-10 70.5 39 76.9
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 2.3e-10 70.5 42 71.4
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 2.3e-10 70.5 42 71.4
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 3.0e-10 70.1 151 34.4
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 3.0e-10 70.1 39 74.4
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 3.0e-10 70.1 39 74.4
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 3.0e-10 70.1 130 37.7
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 3.9e-10 69.7 56 58.9
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 3.9e-10 69.7 39 74.4
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 3.9e-10 69.7 39 74.4
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 3.9e-10 69.7 39 74.4
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 3.9e-10 69.7 39 74.4
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 3.9e-10 69.7 119 36.1
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 3.9e-10 69.7 52 61.5
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 5.1e-10 69.3 57 57.9
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 5.1e-10 69.3 86 44.2
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 5.1e-10 69.3 64 54.7
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 5.1e-10 69.3 147 32.7
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 5.1e-10 69.3 107 36.4
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 5.1e-10 69.3 107 42.1
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 5.1e-10 69.3 62 56.5
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 6.6e-10 68.9 112 38.4
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 6.6e-10 68.9 93 45.2
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 6.6e-10 68.9 128 35.2
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 6.6e-10 68.9 273 29.3
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 6.6e-10 68.9 121 37.2
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 6.6e-10 68.9 40 75.0
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 8.7e-10 68.6 102 41.2
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 8.7e-10 68.6 54 61.1
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 8.7e-10 68.6 43 67.4
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 8.7e-10 68.6 85 43.5
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 8.7e-10 68.6 54 57.4
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 1.1e-09 68.2 109 42.2
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.1e-09 68.2 93 46.2
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 1.1e-09 68.2 90 38.9
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.1e-09 68.2 54 57.4
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 1.1e-09 68.2 87 46.0
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.1e-09 68.2 64 51.6
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 1.1e-09 68.2 87 44.8
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 1.5e-09 67.8 55 58.2
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.5e-09 67.8 85 44.7
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 1.5e-09 67.8 72 47.2
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 1.5e-09 67.8 72 47.2
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 1.5e-09 67.8 43 67.4
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 1.5e-09 67.8 139 36.7
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 1.5e-09 67.8 83 45.8
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 1.9e-09 67.4 96 40.6
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 1.9e-09 67.4 95 43.2
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 1.9e-09 67.4 59 59.3
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 2.5e-09 67.0 66 54.5
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 2.5e-09 67.0 64 51.6
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 2.5e-09 67.0 258 29.8
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 2.5e-09 67.0 77 48.1
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 3.3e-09 66.6 133 38.3
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 3.3e-09 66.6 106 40.6
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 3.3e-09 66.6 128 38.3
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 7.3e-09 65.5 109 38.5
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 9.6e-09 65.1 112 37.5
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 1.3e-08 64.7 158 31.6
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 1.3e-08 64.7 90 44.4
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 1.6e-08 64.3 38 71.1
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.6e-08 64.3 285 27.7
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 2.1e-08 63.9 79 44.3
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 2.1e-08 63.9 88 42.0
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 2.8e-08 63.5 112 33.9
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 6.2e-08 62.4 138 35.5
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 5.3e-07 59.3 288 26.4
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 6.9e-07 58.9 96 39.6
ATR0598G250 Amborella trichopoda HOM05D003648 ORTHO05D004267 4.5e-06 56.2 59 42.4


User provided reference genes

Program Settings