Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 4.8e-154 547.7 268 100.0
AagrBONN_evm.TU.Sc2ySwM_362.2194 Anthoceros agrestis HOM05D024261 ORTHO05D026617 8.8e-23 111.7 290 26.9
Pp3c14_7360 Physcomitrium patens HOM05D024261 ORTHO05D026617 8.3e-21 105.1 274 27.0
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 3.0e-15 86.7 294 27.9
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 5.2e-15 85.9 202 30.2
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 4.4e-14 82.8 278 25.2
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 7.5e-14 82.0 143 37.8
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 2.2e-13 80.5 247 24.7
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 2.8e-13 80.1 211 29.9
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 3.7e-13 79.7 247 25.5
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 3.7e-13 79.7 274 29.6
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 6.3e-13 79.0 150 33.3
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 8.3e-13 78.6 270 28.9
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 8.3e-13 78.6 289 25.3
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 1.4e-12 77.8 215 29.3
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.4e-12 77.8 205 25.4
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 1.4e-12 77.8 210 29.5
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 1.8e-12 77.4 284 25.0
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.8e-12 77.4 247 27.9
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 7.0e-12 75.5 158 34.2
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 7.0e-12 75.5 250 25.2
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 9.2e-12 75.1 251 25.9
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 9.2e-12 75.1 211 29.9
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 1.2e-11 74.7 249 27.7
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 1.2e-11 74.7 253 25.3
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.2e-11 74.7 155 34.2
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 1.6e-11 74.3 207 27.1
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 1.6e-11 74.3 263 25.1
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 2.7e-11 73.6 269 27.1
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.7e-11 73.6 247 27.5
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 2.7e-11 73.6 247 27.5
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 2.7e-11 73.6 250 24.8
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 3.5e-11 73.2 210 28.1
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 3.5e-11 73.2 254 25.2
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 3.5e-11 73.2 150 35.3
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 3.5e-11 73.2 146 34.2
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 4.5e-11 72.8 208 29.3
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 5.9e-11 72.4 175 28.0
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 5.9e-11 72.4 267 27.0
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 5.9e-11 72.4 199 30.7
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 5.9e-11 72.4 272 26.5
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 5.9e-11 72.4 272 26.5
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 5.9e-11 72.4 273 28.2
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 7.8e-11 72.0 149 33.6
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 1.0e-10 71.6 251 27.1
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.0e-10 71.6 149 33.6
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 1.0e-10 71.6 273 26.7
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.0e-10 71.6 205 28.3
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 1.3e-10 71.2 250 25.6
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 1.3e-10 71.2 214 28.0
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 1.3e-10 71.2 205 27.3
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 1.7e-10 70.9 210 28.1
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.7e-10 70.9 149 31.5
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 2.3e-10 70.5 292 27.7
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 2.9e-10 70.1 154 29.2
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 3.9e-10 69.7 209 28.2
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 3.9e-10 69.7 290 27.9
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 3.9e-10 69.7 146 32.2
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 5.0e-10 69.3 271 28.4
Mapoly0031s0052 Marchantia polymorpha HOM05D024261 ORTHO05D026617 5.0e-10 69.3 285 23.2
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 6.6e-10 68.9 255 26.3
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 6.6e-10 68.9 208 28.8
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 6.6e-10 68.9 146 32.9
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 6.6e-10 68.9 218 27.5
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 8.6e-10 68.6 154 28.6
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 8.6e-10 68.6 154 28.6
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 8.6e-10 68.6 248 27.4
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 8.6e-10 68.6 290 27.6
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 8.6e-10 68.6 286 24.8
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 8.6e-10 68.6 202 27.2
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 1.1e-09 68.2 154 28.6
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 1.1e-09 68.2 247 25.9
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 1.1e-09 68.2 247 25.9
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.1e-09 68.2 146 32.2
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 1.1e-09 68.2 254 25.2
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.1e-09 68.2 146 30.1
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 1.1e-09 68.2 261 24.5
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 1.1e-09 68.2 171 28.7
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 1.5e-09 67.8 215 29.3
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 1.5e-09 67.8 281 22.1
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 1.5e-09 67.8 255 25.5
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.5e-09 67.8 290 25.9
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 1.9e-09 67.4 245 24.9
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.9e-09 67.4 146 33.6
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 2.5e-09 67.0 174 32.2
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 2.5e-09 67.0 284 25.7
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 2.5e-09 67.0 290 27.6
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 2.5e-09 67.0 175 28.0
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 2.5e-09 67.0 239 23.8
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 2.5e-09 67.0 214 27.1
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 2.5e-09 67.0 210 29.0
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 2.5e-09 67.0 149 31.5
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 3.3e-09 66.6 202 28.2
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 3.3e-09 66.6 190 26.3
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 4.3e-09 66.2 189 29.6
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 5.6e-09 65.9 215 29.3
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 5.6e-09 65.9 219 29.2
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 7.3e-09 65.5 144 31.2
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 7.3e-09 65.5 268 25.0
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 9.5e-09 65.1 209 29.2
SMO117G0091 Selaginella moellendorffii HOM05D024261 ORTHO05D026617 1.2e-08 64.7 270 23.3
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 2.1e-08 63.9 152 31.6
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 2.1e-08 63.9 276 25.4
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 2.8e-08 63.5 269 26.0
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 2.8e-08 63.5 248 24.6
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 2.8e-08 63.5 186 28.5
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 3.6e-08 63.2 257 24.5
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 4.7e-08 62.8 218 27.1
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 6.1e-08 62.4 202 25.7
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 6.1e-08 62.4 202 26.7
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 6.1e-08 62.4 146 32.2
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 8.0e-08 62.0 190 25.3
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 1.0e-07 61.6 146 29.5
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 1.0e-07 61.6 146 32.9
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.0e-07 61.6 184 27.7
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 1.4e-07 61.2 146 30.8
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 1.8e-07 60.8 153 30.1
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 1.8e-07 60.8 277 26.4
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.8e-07 60.8 134 31.3
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 1.8e-07 60.8 215 28.4
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 4.0e-07 59.7 165 29.1
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 5.2e-07 59.3 233 26.6
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 5.2e-07 59.3 274 26.3
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 6.8e-07 58.9 209 25.4
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 6.8e-07 58.9 247 24.7
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 6.8e-07 58.9 153 27.5
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 8.9e-07 58.5 207 26.6
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 8.9e-07 58.5 153 28.8
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 8.9e-07 58.5 143 35.0
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 8.9e-07 58.5 153 31.4
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 1.5e-06 57.8 146 28.8
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 2.6e-06 57.0 73 42.5
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 3.4e-06 56.6 274 25.5
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 5.8e-06 55.8 260 28.1
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 5.8e-06 55.8 153 26.1
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 9.8e-06 55.1 236 25.8


User provided reference genes

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