Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 0.0e+00 1268.1 624 100.0
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 5.3e-236 821.2 554 71.7
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 7.6e-235 817.4 552 70.7
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 1.7e-234 816.2 557 70.9
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 2.1e-232 809.3 557 71.3
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 1.8e-231 806.2 557 69.7
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 1.9e-230 802.7 554 70.2
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 1.6e-229 799.7 557 70.2
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 2.1e-229 799.3 557 69.5
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 1.1e-228 797.0 557 68.8
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 2.4e-228 795.8 557 69.3
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 1.2e-227 793.5 557 69.1
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 2.0e-227 792.7 557 69.1
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 2.6e-227 792.3 558 68.6
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 3.4e-227 792.0 553 70.2
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 3.4e-227 792.0 557 68.8
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 3.4e-227 792.0 557 68.8
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 3.4e-227 792.0 557 68.8
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 5.8e-227 791.2 557 68.9
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 7.6e-227 790.8 557 67.7
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 9.9e-227 790.4 558 68.5
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 9.9e-227 790.4 557 69.1
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 9.9e-227 790.4 553 68.9
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 1.3e-226 790.0 557 68.6
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 1.7e-226 789.6 557 68.6
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 2.2e-226 789.3 553 69.1
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 8.4e-226 787.3 553 69.6
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 8.4e-226 787.3 557 68.6
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 1.1e-225 786.9 557 68.4
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 1.1e-225 786.9 558 67.6
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.9e-225 786.2 557 67.7
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 2.5e-225 785.8 557 69.3
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 7.1e-225 784.3 557 67.5
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 9.3e-225 783.9 557 68.8
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 1.6e-224 783.1 560 68.2
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 2.1e-224 782.7 557 68.6
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 3.5e-224 781.9 557 68.4
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 3.5e-224 781.9 557 67.0
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 4.6e-224 781.6 553 68.7
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 4.6e-224 781.6 557 67.1
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 4.6e-224 781.6 557 67.9
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 6.0e-224 781.2 557 68.2
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 6.0e-224 781.2 565 66.7
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 6.0e-224 781.2 557 68.0
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 1.0e-223 780.4 558 68.3
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 1.3e-223 780.0 552 68.3
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 1.8e-223 779.6 553 68.4
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 1.8e-223 779.6 557 67.5
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 3.9e-223 778.5 553 68.0
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 3.9e-223 778.5 557 68.2
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 5.1e-223 778.1 553 67.3
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 5.1e-223 778.1 558 68.1
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 8.7e-223 777.3 557 67.7
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 1.1e-222 776.9 557 68.6
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 1.1e-222 776.9 553 68.5
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 4.3e-222 775.0 563 67.7
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 4.3e-222 775.0 557 66.8
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 4.3e-222 775.0 558 67.6
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 9.6e-222 773.9 552 68.5
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 1.3e-221 773.5 541 68.9
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 1.3e-221 773.5 557 66.6
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 2.1e-221 772.7 557 66.4
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 2.1e-221 772.7 549 68.7
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.8e-221 772.3 558 66.8
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 3.7e-221 771.9 557 68.6
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 3.7e-221 771.9 557 68.6
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 8.2e-221 770.8 557 67.1
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 1.1e-220 770.4 553 68.9
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 1.4e-220 770.0 563 67.5
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 1.4e-220 770.0 560 67.3
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.8e-220 769.6 574 65.7
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 4.0e-220 768.5 574 65.7
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 5.3e-220 768.1 558 66.3
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 5.3e-220 768.1 558 66.3
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 9.0e-220 767.3 558 66.3
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 1.2e-219 766.9 575 66.1
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 7.6e-219 764.2 558 68.3
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 1.3e-218 763.5 557 66.6
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 1.4e-217 760.0 561 67.4
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 3.2e-217 758.8 557 66.1
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 5.5e-217 758.1 557 66.2
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 1.2e-216 756.9 557 65.9
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 1.2e-216 756.9 558 65.4
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 1.6e-216 756.5 558 65.2
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 2.1e-216 756.1 523 71.3
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 2.7e-216 755.7 557 65.7
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 7.9e-216 754.2 558 65.2
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 1.3e-215 753.4 557 67.0
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.8e-215 753.1 549 64.1
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 8.7e-215 750.7 551 66.2
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.5e-214 750.0 571 63.2
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 4.3e-214 748.4 580 61.9
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 7.4e-214 747.7 559 64.9
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 2.8e-213 745.7 558 65.8
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 1.1e-212 743.8 553 63.5
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 2.0e-211 739.6 540 66.7
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 2.6e-211 739.2 544 64.3
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 5.9e-211 738.0 559 63.9
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 7.7e-211 737.6 553 65.5
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 8.5e-210 734.2 558 65.2
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 7.2e-209 731.1 558 64.2
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 3.6e-208 728.8 554 65.7
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 3.0e-207 725.7 540 65.6
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 3.9e-207 725.3 530 66.6
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 7.4e-206 721.1 616 59.9
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 2.4e-204 716.1 514 67.3
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 9.1e-204 714.1 558 63.6
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 1.5e-203 713.4 567 64.2
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 9.4e-201 704.1 600 60.3
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 2.3e-199 699.5 553 64.0
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.5e-198 696.8 596 57.9
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.3e-197 693.7 550 59.3
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 1.3e-197 693.7 563 62.0
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 4.5e-195 685.3 560 60.9
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 7.7e-195 684.5 538 63.0
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 1.4e-193 680.2 486 66.7
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 6.7e-191 671.4 488 65.2
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 8.8e-191 671.0 557 62.3
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 2.0e-190 669.8 547 59.2
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 3.1e-188 662.5 538 61.7
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 2.0e-187 659.8 448 71.4
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 1.6e-179 633.6 551 57.2
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.0e-175 620.9 563 56.1
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 7.5e-174 614.8 557 57.1
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 9.8e-174 614.4 486 59.3
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 3.5e-171 605.9 433 69.1
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 1.3e-162 577.4 402 70.9
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 3.4e-158 562.8 392 68.9
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 3.2e-156 556.2 392 69.9
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 1.2e-136 491.1 323 73.1
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 3.6e-120 436.4 320 64.4
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 3.4e-118 429.9 301 70.1
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 7.6e-118 428.7 337 61.7
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 5.4e-116 422.5 289 67.8
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 1.5e-113 414.5 320 61.6
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 3.2e-108 396.7 293 67.6
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 7.4e-105 385.6 272 66.2
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 5.7e-97 359.4 267 64.0
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 2.8e-96 357.1 247 71.7
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 1.8e-90 337.8 237 72.6
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 3.1e-87 327.0 235 68.9
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 1.2e-86 325.1 264 62.5
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 2.1e-75 287.7 240 61.2
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 3.7e-48 197.2 137 67.9
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 4.1e-47 193.7 138 66.7
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 5.4e-47 193.4 139 65.5
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 9.2e-47 192.6 139 65.5
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 1.6e-46 191.8 142 67.6
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 5.9e-46 189.9 181 57.5
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.0e-42 179.1 130 66.2
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 3.1e-34 151.0 98 74.5
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 2.2e-32 144.8 98 72.4
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 2.3e-21 108.2 107 56.1
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 1.6e-19 102.1 66 66.7
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 2.1e-19 101.7 66 66.7
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 8.1e-19 99.8 66 65.2
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 8.1e-19 99.8 71 60.6
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 1.4e-18 99.0 244 25.4
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 1.7e-16 92.0 57 66.7
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.2e-16 91.7 63 66.7
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.1e-15 89.4 63 65.1
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 1.9e-15 88.6 498 23.9
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 2.7e-14 84.7 73 54.8
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 1.5e-12 79.0 54 66.7
PRCOL_00006907 Prasinoderma coloniale HOM05D013921 ORTHO05D014814 1.6e-11 75.5 553 23.1
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 5.8e-09 67.0 54 53.7


User provided reference genes

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