Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_21434 Sequoiadendron giganteum HOM05D000239 ORTHO05D000484 8.4e-143 510.4 263 100.0
Nn4g24191 Nelumbo nucifera HOM05D000239 ORTHO05D000484 1.2e-27 127.9 182 49.5
Aqoxy3G00109 Aquilegia oxysepala HOM05D000239 ORTHO05D000484 2.1e-24 117.1 185 48.6
CSS0005975 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 2.1e-24 117.1 181 51.4
CSS0009740 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 2.1e-24 117.1 181 51.4
Peaxi162Scf00207g00021 Petunia axillaris HOM05D000239 ORTHO05D000484 2.3e-23 113.6 182 47.3
Lj5A156T85 Lonicera japonica HOM05D000239 ORTHO05D000484 3.9e-23 112.8 181 48.6
Lj5C155T8 Lonicera japonica HOM05D000239 ORTHO05D000484 3.9e-23 112.8 181 48.6
Lj9C421T5 Lonicera japonica HOM05D000239 ORTHO05D000484 3.9e-23 112.8 185 43.8
PGSC0003DMG401028784 Solanum tuberosum HOM05D000239 ORTHO05D000484 3.9e-23 112.8 189 46.6
AUR62041011 Chenopodium quinoa HOM05D000239 ORTHO05D000484 1.1e-22 111.3 223 39.0
Potri.015G040100 Populus trichocarpa HOM05D000239 ORTHO05D000484 1.1e-22 111.3 180 46.1
Nitab4.5_0004028g0050 Nicotiana tabacum HOM05D000239 ORTHO05D000484 1.9e-22 110.5 187 44.4
QL10p028175 Quercus lobata HOM05D000239 ORTHO05D000484 2.5e-22 110.2 180 45.6
QL10p028295 Quercus lobata HOM05D000239 ORTHO05D000484 2.5e-22 110.2 180 45.6
Sopen06g026270 Solanum pennellii HOM05D000239 ORTHO05D000484 2.5e-22 110.2 189 46.0
Solyc06g068980.4 Solanum lycopersicum HOM05D000239 ORTHO05D000484 3.3e-22 109.8 189 45.5
TAR629G0146 Trochodendron aralioides HOM05D000239 ORTHO05D000484 3.3e-22 109.8 185 48.6
Sabra15G0057100 Salix brachista HOM05D000239 ORTHO05D000484 5.6e-22 109.0 180 47.2
Solyc03g119140.4 Solanum lycopersicum HOM05D000239 ORTHO05D000484 7.3e-22 108.6 182 47.3
THA.LOC104812164 Tarenaya hassleriana HOM05D000239 ORTHO05D000484 7.3e-22 108.6 186 44.6
TAR371G0963 Trochodendron aralioides HOM05D000239 ORTHO05D000484 1.6e-21 107.5 187 43.9
Cc04_g06440 Coffea canephora HOM05D000239 ORTHO05D000484 2.8e-21 106.7 187 43.9
PGR083G2870 Punica granatum HOM05D000239 ORTHO05D000484 2.8e-21 106.7 180 45.6
Sopen03g038030 Solanum pennellii HOM05D000239 ORTHO05D000484 2.8e-21 106.7 182 46.7
Manes.14G170100 Manihot esculenta HOM05D000239 ORTHO05D000484 3.6e-21 106.3 184 45.7
AUR62042936 Chenopodium quinoa HOM05D000239 ORTHO05D000484 4.8e-21 105.9 223 38.1
Nitab4.5_0003221g0030 Nicotiana tabacum HOM05D000239 ORTHO05D000484 4.8e-21 105.9 184 44.0
Hund02328 Selenicereus undatus HOM05D000239 ORTHO05D000484 4.8e-21 105.9 181 45.3
AagrBONN_evm.TU.Sc2ySwM_368.1982 Anthoceros agrestis HOM05D000239 ORTHO05D000484 6.2e-21 105.5 191 39.3
CSS0030644 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 8.1e-21 105.1 181 45.9
SGA_v2.0_scaffold171G38917 Striga asiatica HOM05D000239 ORTHO05D000484 1.1e-20 104.8 180 43.9
ATR1102G016 Amborella trichopoda HOM05D000239 ORTHO05D000484 1.4e-20 104.4 193 39.9
Prupe.5G231800 Prunus persica HOM05D000239 ORTHO05D000484 3.1e-20 103.2 181 45.3
PGR044G1863 Punica granatum HOM05D000239 ORTHO05D000484 3.1e-20 103.2 183 47.0
Cpa.g.sc3.414 Carica papaya HOM05D000239 ORTHO05D000484 4.0e-20 102.8 186 44.6
Potri.012G048400 Populus trichocarpa HOM05D000239 ORTHO05D000484 4.0e-20 102.8 180 44.4
Oeu046175.1 Olea europaea HOM05D000239 ORTHO05D000484 5.3e-20 102.4 180 44.4
GSVIVG01008413001 Vitis vinifera HOM05D000239 ORTHO05D000484 5.3e-20 102.4 184 44.6
Gohir.A09G052184 Gossypium hirsutum HOM05D000239 ORTHO05D000484 6.9e-20 102.1 182 42.3
Gorai.006G056600 Gossypium raimondii HOM05D000239 ORTHO05D000484 9.0e-20 101.7 182 42.3
EL10Ac5g11566 Beta vulgaris HOM05D000239 ORTHO05D000484 1.2e-19 101.3 180 40.6
Dinv10177 Davidia involucrata HOM05D000239 ORTHO05D000484 1.2e-19 101.3 181 48.1
Lj2g0000546 Lotus japonicus HOM05D000239 ORTHO05D000484 1.2e-19 101.3 184 46.2
Oeu026289.1 Olea europaea HOM05D000239 ORTHO05D000484 1.2e-19 101.3 181 44.2
SalBow1G6508 Salvia bowleyana HOM05D000239 ORTHO05D000484 1.2e-19 101.3 180 43.3
CAN.G1129.16 Capsicum annuum HOM05D000239 ORTHO05D000484 1.5e-19 100.9 180 43.9
Lsat_1_v5_gn_8_144000 Lactuca sativa HOM05D000239 ORTHO05D000484 1.5e-19 100.9 183 41.0
MD14G1235100 Malus domestica HOM05D000239 ORTHO05D000484 1.5e-19 100.9 184 44.6
THA.LOC104813924 Tarenaya hassleriana HOM05D000239 ORTHO05D000484 1.5e-19 100.9 183 41.0
Actinidia35122 Actinidia chinensis HOM05D000239 ORTHO05D000484 2.0e-19 100.5 181 47.5
CiPaw.15G140500 Carya illinoinensis HOM05D000239 ORTHO05D000484 2.0e-19 100.5 183 45.9
Nitab4.5_0001986g0060 Nicotiana tabacum HOM05D000239 ORTHO05D000484 2.0e-19 100.5 181 42.5
VMungo0464G0933 Vigna mungo HOM05D000239 ORTHO05D000484 2.0e-19 100.5 184 44.0
Cfa019679 Carpinus fangiana HOM05D000239 ORTHO05D000484 2.6e-19 100.1 187 43.9
Phvul.004G151400 Phaseolus vulgaris HOM05D000239 ORTHO05D000484 2.6e-19 100.1 180 46.1
CAN.G423.24 Capsicum annuum HOM05D000239 ORTHO05D000484 3.4e-19 99.8 184 44.6
ClCG04G010710 Citrullus lanatus HOM05D000239 ORTHO05D000484 7.6e-19 98.6 188 45.2
MD06G1230500 Malus domestica HOM05D000239 ORTHO05D000484 7.6e-19 98.6 181 44.2
DCAR_011327 Daucus carota HOM05D000239 ORTHO05D000484 1.3e-18 97.8 180 39.4
Migut.D01561 Erythranthe guttata HOM05D000239 ORTHO05D000484 1.3e-18 97.8 189 42.9
Sabra12G0034000 Salix brachista HOM05D000239 ORTHO05D000484 1.3e-18 97.8 192 41.7
Ciclev10007317m.g Citrus clementina HOM05D000239 ORTHO05D000484 1.7e-18 97.4 180 42.2
Nitab4.5_0007852g0020 Nicotiana tabacum HOM05D000239 ORTHO05D000484 1.7e-18 97.4 180 43.3
Duzib068G0966 Durio zibethinus HOM05D000239 ORTHO05D000484 2.2e-18 97.1 180 42.8
Actinidia18903 Actinidia chinensis HOM05D000239 ORTHO05D000484 3.8e-18 96.3 182 45.1
Thhalv10018059m.g Eutrema salsugineum HOM05D000239 ORTHO05D000484 3.8e-18 96.3 189 39.7
AT1G73660 Arabidopsis thaliana HOM05D000239 ORTHO05D000484 4.9e-18 95.9 206 39.3
Peaxi162Scf00683g00162 Petunia axillaris HOM05D000239 ORTHO05D000484 4.9e-18 95.9 180 42.8
DCAR_014731 Daucus carota HOM05D000239 ORTHO05D000484 6.4e-18 95.5 181 42.0
Thecc.03G053200 Theobroma cacao HOM05D000239 ORTHO05D000484 6.4e-18 95.5 180 40.6
VMungo0251G2968 Vigna mungo HOM05D000239 ORTHO05D000484 6.4e-18 95.5 184 42.9
AL2G33450 Arabidopsis lyrata HOM05D000239 ORTHO05D000484 8.4e-18 95.1 205 38.5
Thhalv10006685m.g Eutrema salsugineum HOM05D000239 ORTHO05D000484 8.4e-18 95.1 186 39.2
PSO478G5173 Papaver somniferum HOM05D000239 ORTHO05D000484 8.4e-18 95.1 180 40.6
Carub.0001s1780 Capsella rubella HOM05D000239 ORTHO05D000484 1.1e-17 94.7 186 39.2
Ah.11g045240 Amaranthus hybridus HOM05D000239 ORTHO05D000484 1.4e-17 94.4 181 42.5
COL.COLO4_16138 Corchorus olitorius HOM05D000239 ORTHO05D000484 1.4e-17 94.4 183 41.5
Sed0027543 Sechium edule HOM05D000239 ORTHO05D000484 1.4e-17 94.4 182 42.3
AT1G18160 Arabidopsis thaliana HOM05D000239 ORTHO05D000484 1.9e-17 94.0 184 39.7
Glyma.05G245300 Glycine max HOM05D000239 ORTHO05D000484 1.9e-17 94.0 184 43.5
Lsat_1_v5_gn_2_19441 Lactuca sativa HOM05D000239 ORTHO05D000484 1.9e-17 94.0 182 39.6
Aa31LG4G3970 Aethionema arabicum HOM05D000239 ORTHO05D000484 2.4e-17 93.6 183 38.8
AL1G30530 Arabidopsis lyrata HOM05D000239 ORTHO05D000484 4.2e-17 92.8 184 38.6
PSO017G2061 Papaver somniferum HOM05D000239 ORTHO05D000484 4.2e-17 92.8 186 40.3
vmacro16418 Vaccinium macrocarpon HOM05D000239 ORTHO05D000484 4.2e-17 92.8 180 43.9
CsaV3_1G007070 Cucumis sativus L. HOM05D000239 ORTHO05D000484 5.4e-17 92.4 182 43.4
Glyma.07G101600 Glycine max HOM05D000239 ORTHO05D000484 5.4e-17 92.4 181 43.6
Lj4g0013397 Lotus japonicus HOM05D000239 ORTHO05D000484 5.4e-17 92.4 181 41.4
MELO3C002125.2 Cucumis melo HOM05D000239 ORTHO05D000484 7.1e-17 92.0 182 43.4
FvH4_5g17200 Fragaria vesca HOM05D000239 ORTHO05D000484 7.1e-17 92.0 185 43.8
CARHR018720 Cardamine hirsuta HOM05D000239 ORTHO05D000484 9.3e-17 91.7 188 39.4
Ca_17204_v3 Cicer arietinum L. HOM05D000239 ORTHO05D000484 9.3e-17 91.7 184 41.8
Eucgr.B00874 Eucalyptus grandis HOM05D000239 ORTHO05D000484 9.3e-17 91.7 187 40.1
FAN18G2938 Fragaria x ananassa HOM05D000239 ORTHO05D000484 9.3e-17 91.7 185 43.2
FAN04G2649 Fragaria x ananassa HOM05D000239 ORTHO05D000484 1.2e-16 91.3 185 43.2
RcHm_v2.0_Chr7g0178591 Rosa chinensis HOM05D000239 ORTHO05D000484 1.2e-16 91.3 185 43.8
Carub.0002s2041 Capsella rubella HOM05D000239 ORTHO05D000484 4.6e-16 89.4 183 36.6
Rhsim12G0139200 Rhododendron simsii HOM05D000239 ORTHO05D000484 6.0e-16 89.0 179 43.6
Sp1g16150 Schrenkiella parvula HOM05D000239 ORTHO05D000484 6.0e-16 89.0 184 38.6
FAN13G1645 Fragaria x ananassa HOM05D000239 ORTHO05D000484 1.3e-15 87.8 185 42.2
Glyma.08G052700 Glycine max HOM05D000239 ORTHO05D000484 1.3e-15 87.8 184 40.2
Glyma.09G177600 Glycine max HOM05D000239 ORTHO05D000484 1.3e-15 87.8 180 39.4
Mapoly0079s0050 Marchantia polymorpha HOM05D000239 ORTHO05D000484 1.3e-15 87.8 233 35.6
TPR.G12742 Trifolium pratense HOM05D000239 ORTHO05D000484 1.3e-15 87.8 193 39.9
Duzib084G0861 Durio zibethinus HOM05D000239 ORTHO05D000484 1.8e-15 87.4 180 39.4
BcaB07g31826 Brassica carinata HOM05D000239 ORTHO05D000484 2.3e-15 87.0 185 36.8
Lalb_Chr09g0330441 Lupinus albus HOM05D000239 ORTHO05D000484 3.9e-15 86.3 184 41.3
Psat7g001920 Pisum sativum HOM05D000239 ORTHO05D000484 8.7e-15 85.1 181 42.0
BcaC05g25712 Brassica carinata HOM05D000239 ORTHO05D000484 1.9e-14 84.0 194 37.1
C05p16480 Brassica napus HOM05D000239 ORTHO05D000484 1.9e-14 84.0 194 37.1
BolC5t30345H Brassica oleracea HOM05D000239 ORTHO05D000484 1.9e-14 84.0 194 37.1
Dinv18256 Davidia involucrata HOM05D000239 ORTHO05D000484 5.6e-14 82.4 118 47.5
Aa31LG7G2910 Aethionema arabicum HOM05D000239 ORTHO05D000484 7.4e-14 82.0 170 39.4
A07p39530 Brassica napus HOM05D000239 ORTHO05D000484 9.6e-14 81.6 184 37.5
BraA07t31502Z Brassica rapa HOM05D000239 ORTHO05D000484 9.6e-14 81.6 184 37.5
Ca_25314_v3 Cicer arietinum L. HOM05D000239 ORTHO05D000484 9.6e-14 81.6 180 40.0
Lalb_Chr05g0221791 Lupinus albus HOM05D000239 ORTHO05D000484 1.6e-13 80.9 180 40.6
Phvul.002G328800 Phaseolus vulgaris HOM05D000239 ORTHO05D000484 4.8e-13 79.3 81 59.3
Gohir.D12G269000 Gossypium hirsutum HOM05D000239 ORTHO05D000484 8.1e-13 78.6 183 37.7
BcaB03g15071 Brassica carinata HOM05D000239 ORTHO05D000484 1.1e-12 78.2 184 37.0
DCAR_031740 Daucus carota HOM05D000239 ORTHO05D000484 1.1e-12 78.2 168 40.5
Gorai.008G289300 Gossypium raimondii HOM05D000239 ORTHO05D000484 1.4e-12 77.8 180 38.3
Medtr8g107000 Medicago truncatula HOM05D000239 ORTHO05D000484 4.0e-12 76.3 142 44.4
BolC6t39816H Brassica oleracea HOM05D000239 ORTHO05D000484 5.3e-12 75.9 185 34.6
BcaC08g46786 Brassica carinata HOM05D000239 ORTHO05D000484 6.9e-12 75.5 185 35.1
C06p47770 Brassica napus HOM05D000239 ORTHO05D000484 6.9e-12 75.5 185 35.1
CARHR066730 Cardamine hirsuta HOM05D000239 ORTHO05D000484 6.9e-12 75.5 185 34.6
A06p14190 Brassica napus HOM05D000239 ORTHO05D000484 3.4e-11 73.2 184 33.7
BraA06t24551Z Brassica rapa HOM05D000239 ORTHO05D000484 3.4e-11 73.2 184 33.7
Lalb_Chr22g0353361 Lupinus albus HOM05D000239 ORTHO05D000484 4.5e-11 72.8 60 68.3
HanXRQChr14g0432751 Helianthus annuus HOM05D000239 ORTHO05D000484 7.6e-11 72.0 183 35.5
arahy.Tifrunner.gnm1.ann1.36URGF Arachis hypogaea HOM05D000239 ORTHO05D000484 9.9e-11 71.6 188 36.7
arahy.Tifrunner.gnm1.ann1.V5GBYV Arachis hypogaea HOM05D000239 ORTHO05D000484 9.9e-11 71.6 188 36.7
Atru.chr2.3379 Acer truncatum HOM05D000239 ORTHO05D000484 1.7e-10 70.9 113 45.1
HanXRQChr05g0143361 Helianthus annuus HOM05D000239 ORTHO05D000484 2.9e-10 70.1 183 39.9
Sc12g0007160 Simmondsia chinensis HOM05D000239 ORTHO05D000484 3.8e-10 69.7 51 70.6
Medtr6g079540 Medicago truncatula HOM05D000239 ORTHO05D000484 1.4e-09 67.8 180 36.7
ECA233G4877 Erigeron canadensis HOM05D000239 ORTHO05D000484 3.2e-09 66.6 56 60.7
Zm00001eb372210 Zea mays HOM05D000239 ORTHO05D000484 5.5e-09 65.9 186 33.3
Atru.chr9.1751 Acer truncatum HOM05D000239 ORTHO05D000484 1.6e-08 64.3 186 36.6
HanXRQChr06g0183561 Helianthus annuus HOM05D000239 ORTHO05D000484 6.7e-07 58.9 62 53.2
SMO266G0109 Selaginella moellendorffii HOM05D000239 ORTHO05D000484 8.7e-07 58.5 57 56.1
ECA238G2009 Erigeron canadensis HOM05D000239 ORTHO05D000484 1.5e-06 57.8 130 40.0
AT5G11850 Arabidopsis thaliana HOM05D000239 ORTHO05D000484 2.5e-06 57.0 189 31.2
ATR0749G057 Amborella trichopoda HOM05D000239 ORTHO05D000484 7.4e-06 55.5 58 46.6
GSVIVG01035409001 Vitis vinifera HOM05D000239 ORTHO05D000484 7.4e-06 55.5 189 32.8


User provided reference genes

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