Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_21412 Sequoiadendron giganteum HOM05D005240 ORTHO05D006471 1.1e-33 146.0 70 100.0
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 1.9e-09 65.5 47 63.8
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 2.5e-09 65.1 53 60.4
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 3.2e-09 64.7 53 60.4
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 5.5e-09 63.9 50 62.0
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 1.6e-08 62.4 53 56.6
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 2.1e-08 62.0 45 66.7
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 2.7e-08 61.6 45 66.7
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 3.6e-08 61.2 45 64.4
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 4.7e-08 60.8 45 64.4
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 4.7e-08 60.8 46 60.9
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 4.7e-08 60.8 47 59.6
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 6.1e-08 60.5 45 64.4
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 8.0e-08 60.1 45 62.2
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 8.0e-08 60.1 60 55.0
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 8.0e-08 60.1 46 58.7
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 1.0e-07 59.7 53 52.8
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 1.0e-07 59.7 50 58.0
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 1.4e-07 59.3 50 58.0
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 1.4e-07 59.3 55 54.5
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 1.4e-07 59.3 44 61.4
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 1.8e-07 58.9 45 62.2
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 1.8e-07 58.9 45 60.0
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 2.3e-07 58.5 45 60.0
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 2.3e-07 58.5 50 58.0
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 2.3e-07 58.5 55 56.4
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 3.0e-07 58.2 47 57.4
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 3.0e-07 58.2 50 58.0
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 3.0e-07 58.2 50 58.0
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 3.0e-07 58.2 46 54.3
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 4.0e-07 57.8 46 56.5
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 5.2e-07 57.4 47 59.6
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 5.2e-07 57.4 43 60.5
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 5.2e-07 57.4 46 58.7
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 5.2e-07 57.4 46 58.7
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 5.2e-07 57.4 46 58.7
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 5.2e-07 57.4 50 56.0
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 6.7e-07 57.0 47 57.4
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 6.7e-07 57.0 57 56.1
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 6.7e-07 57.0 57 56.1
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 6.7e-07 57.0 52 53.8
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 6.7e-07 57.0 47 59.6
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 8.8e-07 56.6 46 58.7
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 8.8e-07 56.6 46 56.5
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 8.8e-07 56.6 46 58.7
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 1.2e-06 56.2 52 51.9
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 1.2e-06 56.2 46 58.7
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 1.2e-06 56.2 53 54.7
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 1.2e-06 56.2 45 57.8
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 1.5e-06 55.8 46 58.7
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 2.0e-06 55.5 52 55.8
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 2.0e-06 55.5 45 53.3
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 2.0e-06 55.5 45 57.8
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 2.0e-06 55.5 45 57.8
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 2.6e-06 55.1 57 50.9
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 2.6e-06 55.1 54 53.7
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 2.6e-06 55.1 56 51.8
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 2.6e-06 55.1 45 57.8
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 2.6e-06 55.1 47 55.3
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 3.3e-06 54.7 46 52.2
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 4.4e-06 54.3 44 56.8
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 4.4e-06 54.3 47 55.3
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 4.4e-06 54.3 46 56.5
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 5.7e-06 53.9 45 55.6
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 5.7e-06 53.9 45 55.6
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 5.7e-06 53.9 47 55.3
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 5.7e-06 53.9 47 51.1
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 5.7e-06 53.9 47 59.6
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 7.5e-06 53.5 45 53.3
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 7.5e-06 53.5 46 58.7
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 7.5e-06 53.5 41 61.0
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 9.7e-06 53.1 46 56.5
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 9.7e-06 53.1 53 50.9
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 9.7e-06 53.1 52 50.0
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 9.7e-06 53.1 45 55.6
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 9.7e-06 53.1 53 50.9


User provided reference genes

Program Settings