Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 3.1e-254 881.3 451 100.0
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 4.8e-90 335.9 403 49.9
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 3.5e-88 329.7 388 49.7
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 3.5e-88 329.7 397 47.9
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 5.9e-88 328.9 396 50.5
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 1.3e-87 327.8 387 49.1
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 2.3e-87 327.0 391 49.1
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 3.8e-87 326.2 402 49.0
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 6.6e-87 325.5 392 49.2
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 3.3e-86 323.2 388 49.2
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 3.3e-86 323.2 388 49.2
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 9.5e-86 321.6 390 48.2
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 1.6e-85 320.9 407 46.9
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 3.6e-85 319.7 394 49.5
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 1.4e-84 317.8 406 47.5
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 1.8e-84 317.4 397 47.9
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 1.8e-84 317.4 381 48.0
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 2.3e-84 317.0 395 48.6
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 3.0e-84 316.6 400 47.0
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 4.0e-84 316.2 399 46.1
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 8.9e-84 315.1 418 45.7
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 2.6e-83 313.5 397 48.1
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 3.4e-83 313.2 396 46.7
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 3.4e-83 313.2 385 48.1
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 4.4e-83 312.8 409 45.0
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 7.5e-83 312.0 394 47.5
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 7.5e-83 312.0 419 46.5
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 3.7e-82 309.7 389 46.8
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 8.3e-82 308.5 417 45.1
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 8.3e-82 308.5 393 47.3
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 2.4e-81 307.0 399 45.4
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 7.0e-81 305.4 381 47.5
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 1.6e-80 304.3 403 45.7
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 1.6e-80 304.3 390 46.7
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 1.6e-80 304.3 394 45.4
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 1.6e-80 304.3 402 45.8
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 2.0e-80 303.9 390 46.9
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 7.8e-80 302.0 464 42.5
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 1.0e-79 301.6 415 45.5
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 1.0e-79 301.6 408 45.1
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 1.3e-79 301.2 382 47.6
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 1.3e-79 301.2 427 42.9
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 1.7e-79 300.8 397 45.6
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 2.9e-79 300.1 397 43.6
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 3.9e-79 299.7 407 45.5
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 8.6e-79 298.5 394 45.4
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 3.3e-78 296.6 392 46.9
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 3.3e-78 296.6 397 46.6
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 5.6e-78 295.8 391 45.5
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 7.3e-78 295.4 391 45.5
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 9.5e-78 295.0 413 41.9
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 2.1e-77 293.9 397 42.8
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 2.8e-77 293.5 392 44.6
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 2.8e-77 293.5 388 44.8
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 3.6e-77 293.1 390 46.9
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 6.1e-77 292.4 414 41.8
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 8.0e-77 292.0 413 43.1
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 1.0e-76 291.6 396 43.9
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 1.4e-76 291.2 420 41.7
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 1.4e-76 291.2 386 44.8
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 1.8e-76 290.8 417 43.2
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 4.0e-76 289.7 387 45.5
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 5.2e-76 289.3 388 46.4
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 6.8e-76 288.9 390 44.4
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 8.9e-76 288.5 383 44.4
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 8.9e-76 288.5 404 44.1
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 8.9e-76 288.5 397 45.8
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 1.5e-75 287.7 404 43.6
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 1.5e-75 287.7 384 45.3
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 1.5e-75 287.7 386 43.8
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 2.0e-75 287.3 399 45.6
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 2.0e-75 287.3 395 44.1
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 3.4e-75 286.6 392 44.4
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 3.4e-75 286.6 390 44.6
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 3.4e-75 286.6 390 44.6
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 5.8e-75 285.8 401 42.1
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 7.5e-75 285.4 412 44.2
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.3e-74 284.6 404 43.1
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 3.7e-74 283.1 394 43.4
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 3.7e-74 283.1 405 42.7
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 3.7e-74 283.1 412 42.0
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 3.7e-74 283.1 391 46.0
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 3.7e-74 283.1 395 44.8
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 4.9e-74 282.7 389 45.5
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 4.9e-74 282.7 401 43.6
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.9e-73 280.8 391 45.8
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 4.1e-73 279.6 406 41.9
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 7.0e-73 278.9 390 41.8
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 7.0e-73 278.9 396 41.9
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 2.0e-72 277.3 397 42.8
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 2.0e-72 277.3 392 42.1
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 2.7e-72 276.9 393 44.5
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 3.5e-72 276.6 402 44.5
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 6.0e-72 275.8 390 43.1
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 1.7e-71 274.2 304 50.0
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 1.7e-71 274.2 389 42.4
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 8.6e-71 271.9 404 42.3
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 2.3e-68 263.8 389 42.4
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 3.1e-68 263.5 289 48.1
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 2.6e-67 260.4 430 38.8
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 3.4e-67 260.0 367 44.1
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 4.1e-65 253.1 368 42.9
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 4.1e-65 253.1 389 42.7
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 6.0e-64 249.2 409 40.3
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 1.0e-55 221.9 434 38.0
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 9.9e-51 205.3 324 43.2
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 1.9e-49 201.1 484 31.6
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 3.5e-48 196.8 311 39.5
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 4.3e-46 189.9 285 41.4
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 3.1e-44 183.7 335 39.7
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 2.0e-43 181.0 313 39.6
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 2.9e-42 177.2 239 42.7
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 3.0e-39 167.2 459 31.8
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 5.6e-38 162.9 303 37.3
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 3.4e-35 153.7 307 35.5
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 4.8e-29 133.3 232 38.4
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 1.8e-28 131.3 87 72.4
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 1.0e-26 125.6 155 43.2
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.4e-25 121.7 208 38.5
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.4e-25 121.7 147 46.9
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 7.1e-25 119.4 135 48.9
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 1.3e-23 115.2 153 45.1
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 1.5e-22 111.7 136 46.3
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 5.0e-18 96.7 83 57.8
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 7.9e-16 89.4 108 45.4
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 1.8e-15 88.2 133 34.6
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 1.1e-14 85.5 180 31.1
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 1.1e-12 79.0 233 27.5
QL10p059701 Quercus lobata HOM05D006041 ORTHO05D007473 1.0e-07 62.4 177 31.1
Aqoxy4G01147 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 1.1e-06 58.9 60 61.7
GSVIVG01003278001 Vitis vinifera HOM05D002747 ORTHO05D003069 1.5e-06 58.5 101 31.7
COL.COLO4_15646 Corchorus olitorius HOM05D002747 ORTHO05D003069 7.4e-06 56.2 140 29.3
Aa31sc37G10 Aethionema arabicum HOM05D002747 ORTHO05D003069 9.7e-06 55.8 56 41.1


User provided reference genes

Program Settings