Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_21160 Sequoiadendron giganteum HOM05D004665 ORTHO05D006264 5.1e-75 284.3 138 100.0
Ca_04509_v3 Cicer arietinum L. HOM05D004665 ORTHO05D006264 5.7e-26 121.3 78 74.4
Dinv33260 Davidia involucrata HOM05D004665 ORTHO05D006264 9.8e-26 120.6 82 70.7
PSO478G3167 Papaver somniferum HOM05D004665 ORTHO05D006264 9.8e-26 120.6 77 75.3
PSO017G6847 Papaver somniferum HOM05D004665 ORTHO05D006264 1.3e-25 120.2 77 75.3
TAR622G0174 Trochodendron aralioides HOM05D004665 ORTHO05D006264 1.3e-25 120.2 82 70.7
TWI60G0175 Tripterygium wilfordii HOM05D004665 ORTHO05D006264 1.7e-25 119.8 86 66.3
Aqoxy271s005 Aquilegia oxysepala HOM05D004665 ORTHO05D006264 3.7e-25 118.6 81 70.4
Aqoxy5G03000 Aquilegia oxysepala HOM05D004665 ORTHO05D006264 3.7e-25 118.6 81 70.4
MD09G1001000 Malus domestica HOM05D004665 ORTHO05D006264 3.7e-25 118.6 92 65.2
QL02p068558 Quercus lobata HOM05D004665 ORTHO05D006264 3.7e-25 118.6 117 53.8
arahy.Tifrunner.gnm1.ann1.3E1BT5 Arachis hypogaea HOM05D004665 ORTHO05D006264 6.3e-25 117.9 82 70.7
ECA238G3366 Erigeron canadensis HOM05D004665 ORTHO05D006264 6.3e-25 117.9 81 69.1
Glyma.16G149500 Glycine max HOM05D004665 ORTHO05D006264 6.3e-25 117.9 86 66.3
Gohir.D11G065800 Gossypium hirsutum HOM05D004665 ORTHO05D006264 6.3e-25 117.9 71 80.3
Gohir.D11G065866 Gossypium hirsutum HOM05D004665 ORTHO05D006264 6.3e-25 117.9 71 80.3
Gorai.007G071300 Gossypium raimondii HOM05D004665 ORTHO05D006264 6.3e-25 117.9 71 80.3
HanXRQChr07g0197991 Helianthus annuus HOM05D004665 ORTHO05D006264 6.3e-25 117.9 72 79.2
Phvul.004G068100 Phaseolus vulgaris HOM05D004665 ORTHO05D006264 8.3e-25 117.5 86 67.4
VMungo0464G1810 Vigna mungo HOM05D004665 ORTHO05D006264 8.3e-25 117.5 86 67.4
CiPaw.04G000200 Carya illinoinensis HOM05D004665 ORTHO05D006264 1.1e-24 117.1 91 63.7
Glyma.02G068000 Glycine max HOM05D004665 ORTHO05D006264 1.1e-24 117.1 86 66.3
Medtr6g033100 Medicago truncatula HOM05D004665 ORTHO05D006264 1.1e-24 117.1 86 67.4
THA.LOC104824001 Tarenaya hassleriana HOM05D004665 ORTHO05D006264 1.1e-24 117.1 83 67.5
ATR0582G225 Amborella trichopoda HOM05D004665 ORTHO05D006264 1.4e-24 116.7 78 71.8
arahy.Tifrunner.gnm1.ann1.1F18R3 Arachis hypogaea HOM05D004665 ORTHO05D006264 1.4e-24 116.7 79 70.9
Zm00001eb242230 Zea mays HOM05D004665 ORTHO05D006264 1.4e-24 116.7 75 74.7
COL.COLO4_13402 Corchorus olitorius HOM05D004665 ORTHO05D006264 1.8e-24 116.3 71 80.3
FAN05G2324 Fragaria x ananassa HOM05D004665 ORTHO05D006264 1.8e-24 116.3 73 76.7
Lj2g0020206 Lotus japonicus HOM05D004665 ORTHO05D006264 1.8e-24 116.3 86 67.4
Os02g0518100 Oryza sativa ssp. japonica HOM05D004665 ORTHO05D006264 1.8e-24 116.3 93 64.5
Ah.02g128750 Amaranthus hybridus HOM05D000154 ORTHO05D000092 2.4e-24 115.9 79 69.6
Hma1.2p1_0421F.1_g149890 Hydrangea macrophylla HOM05D004665 ORTHO05D006264 2.4e-24 115.9 71 78.9
Nitab4.5_0000519g0340 Nicotiana tabacum HOM05D004665 ORTHO05D006264 2.4e-24 115.9 71 78.9
Nitab4.5_0002901g0090 Nicotiana tabacum HOM05D004665 ORTHO05D006264 2.4e-24 115.9 71 78.9
GSVIVG01032952001 Vitis vinifera HOM05D004665 ORTHO05D006264 2.4e-24 115.9 71 78.9
Cpa.g.sc70.39 Carica papaya HOM05D004665 ORTHO05D006264 3.2e-24 115.5 82 68.3
Cc07_g01420 Coffea canephora HOM05D004665 ORTHO05D006264 3.2e-24 115.5 79 70.9
MD17G1004100 Malus domestica HOM05D004665 ORTHO05D006264 3.2e-24 115.5 92 63.0
Eucgr.I01571 Eucalyptus grandis HOM05D004665 ORTHO05D006264 4.1e-24 115.2 105 55.2
TPR.G6109 Trifolium pratense HOM05D004665 ORTHO05D006264 4.1e-24 115.2 86 66.3
EL10Ac6g13903 Beta vulgaris HOM05D004665 ORTHO05D006264 5.4e-24 114.8 71 77.5
Duzib264G1200 Durio zibethinus HOM05D004665 ORTHO05D006264 5.4e-24 114.8 71 78.9
Gohir.A11G061900 Gossypium hirsutum HOM05D004665 ORTHO05D006264 5.4e-24 114.8 71 78.9
Psat1g014640 Pisum sativum HOM05D004665 ORTHO05D006264 5.4e-24 114.8 92 63.0
PGR142G3265 Punica granatum HOM05D004665 ORTHO05D006264 5.4e-24 114.8 82 68.3
Sc16g0004200 Simmondsia chinensis HOM05D004665 ORTHO05D006264 5.4e-24 114.8 71 78.9
Atru.chr6.2724 Acer truncatum HOM05D004665 ORTHO05D006264 7.0e-24 114.4 71 78.9
CAN.G473.165 Capsicum annuum HOM05D004665 ORTHO05D006264 7.0e-24 114.4 71 77.5
AUR62017468 Chenopodium quinoa HOM05D004665 ORTHO05D006264 7.0e-24 114.4 71 77.5
AUR62032536 Chenopodium quinoa HOM05D004665 ORTHO05D006264 7.0e-24 114.4 71 77.5
Migut.F00002 Erythranthe guttata HOM05D004665 ORTHO05D006264 7.0e-24 114.4 79 69.6
Lsat_1_v5_gn_2_95241 Lactuca sativa HOM05D005263 ORTHO05D006891 7.0e-24 114.4 70 78.6
Nn4g22078 Nelumbo nucifera HOM05D004665 ORTHO05D006264 7.0e-24 114.4 71 77.5
Oeu050153.1 Olea europaea HOM05D004665 ORTHO05D006264 7.0e-24 114.4 71 77.5
Hund04137 Selenicereus undatus HOM05D004665 ORTHO05D006264 7.0e-24 114.4 93 61.3
C02p53220 Brassica napus HOM05D004665 ORTHO05D006264 9.2e-24 114.0 81 65.4
FvH4_6g54450 Fragaria vesca HOM05D004665 ORTHO05D006264 9.2e-24 114.0 71 77.5
FAN09G0696 Fragaria x ananassa HOM05D004665 ORTHO05D006264 9.2e-24 114.0 71 77.5
FAN14G5400 Fragaria x ananassa HOM05D004665 ORTHO05D006264 9.2e-24 114.0 71 77.5
Potri.014G139700 Populus trichocarpa HOM05D004665 ORTHO05D006264 9.2e-24 114.0 71 76.1
Thhalv10004224m.g Eutrema salsugineum HOM05D004665 ORTHO05D006264 1.2e-23 113.6 76 69.7
Peaxi162Scf00420g00913 Petunia axillaris HOM05D004665 ORTHO05D006264 1.2e-23 113.6 70 78.6
Prupe.3G315100 Prunus persica HOM05D004665 ORTHO05D006264 1.2e-23 113.6 71 77.5
RcHm_v2.0_Chr2g0176711 Rosa chinensis HOM05D004665 ORTHO05D006264 1.2e-23 113.6 71 77.5
Sabra14G0105400 Salix brachista HOM05D004665 ORTHO05D006264 1.2e-23 113.6 71 76.1
Thecc.04G051300 Theobroma cacao HOM05D004665 ORTHO05D006264 1.2e-23 113.6 71 77.5
vmacro18403 Vaccinium macrocarpon HOM05D004665 ORTHO05D006264 1.2e-23 113.6 82 67.1
CSS0012528 Camellia sinensis var. sinensis HOM05D004665 ORTHO05D006264 1.6e-23 113.2 82 67.1
CSS0013787 Camellia sinensis var. sinensis HOM05D004665 ORTHO05D006264 1.6e-23 113.2 82 67.1
Rhsim08G0037600 Rhododendron simsii HOM05D004665 ORTHO05D006264 1.6e-23 113.2 82 67.1
Carub.0005s0467 Capsella rubella HOM05D004665 ORTHO05D006264 2.0e-23 112.8 75 70.7
Cfa007139 Carpinus fangiana HOM05D004665 ORTHO05D006264 2.0e-23 112.8 71 77.5
CDE06G1855 Ceratophyllum demersum HOM05D004665 ORTHO05D006264 2.0e-23 112.8 72 75.0
Haze_14984 Corylus avellana HOM05D004665 ORTHO05D006264 2.0e-23 112.8 71 77.5
Sp2g15790 Schrenkiella parvula HOM05D004665 ORTHO05D006264 2.0e-23 112.8 75 70.7
THA.LOC104805296 Tarenaya hassleriana HOM05D004665 ORTHO05D006264 2.0e-23 112.8 83 66.3
HPP92_021581 Vanilla planifolia HOM05D004665 ORTHO05D006264 2.0e-23 112.8 72 73.6
Zm00001eb060310 Zea mays HOM05D004665 ORTHO05D006264 2.0e-23 112.8 75 72.0
AL5G15510 Arabidopsis lyrata HOM05D004665 ORTHO05D006264 2.7e-23 112.5 74 71.6
MSTRG.3035 Avicennia marina HOM05D004665 ORTHO05D006264 2.7e-23 112.5 71 76.1
CAN.G1393.18 Capsicum annuum HOM05D004665 ORTHO05D006264 2.7e-23 112.5 78 69.2
CARHR147680 Cardamine hirsuta HOM05D004665 ORTHO05D006264 2.7e-23 112.5 76 69.7
BcaC06g31051 Brassica carinata HOM05D004665 ORTHO05D006264 3.5e-23 112.1 75 72.0
A06p41830 Brassica napus HOM05D004665 ORTHO05D006264 3.5e-23 112.1 75 72.0
C07p35690 Brassica napus HOM05D004665 ORTHO05D006264 3.5e-23 112.1 75 72.0
BolC7t44090H Brassica oleracea HOM05D004665 ORTHO05D006264 3.5e-23 112.1 75 72.0
BraA06t27102Z Brassica rapa HOM05D004665 ORTHO05D006264 3.5e-23 112.1 75 72.0
Manes.04G097200 Manihot esculenta HOM05D004665 ORTHO05D006264 3.5e-23 112.1 71 74.6
Aa31LG2G5890 Aethionema arabicum HOM05D004665 ORTHO05D006264 4.6e-23 111.7 75 70.7
BcaB07g30221 Brassica carinata HOM05D004665 ORTHO05D006264 4.6e-23 111.7 75 70.7
BcaB07g30223 Brassica carinata HOM05D004665 ORTHO05D006264 4.6e-23 111.7 75 70.7
A02p34660 Brassica napus HOM05D004665 ORTHO05D006264 4.6e-23 111.7 75 70.7
BraA02t08474Z Brassica rapa HOM05D004665 ORTHO05D006264 4.6e-23 111.7 75 70.7
CANSAT64G2474 Cannabis sativa HOM05D004665 ORTHO05D006264 4.6e-23 111.7 71 76.1
Lalb_Chr21g0316981 Lupinus albus HOM05D004665 ORTHO05D006264 4.6e-23 111.7 71 76.1
Nitab4.5_0003951g0020 Nicotiana tabacum HOM05D004665 ORTHO05D006264 4.6e-23 111.7 96 61.5
HPP92_009749 Vanilla planifolia HOM05D004665 ORTHO05D006264 4.6e-23 111.7 71 77.5
HPP92_009766 Vanilla planifolia HOM05D004665 ORTHO05D006264 4.6e-23 111.7 71 77.5
Lalb_Chr02g0156931 Lupinus albus HOM05D004665 ORTHO05D006264 5.9e-23 111.3 70 78.6
Zm00001eb180680 Zea mays HOM05D004665 ORTHO05D006264 5.9e-23 111.3 75 70.7
Ciclev10015243m.g Citrus clementina HOM05D004665 ORTHO05D006264 7.8e-23 110.9 71 76.1
MBI11_g30566_MAGBIO Magnolia biondii HOM05D004665 ORTHO05D006264 7.8e-23 110.9 77 68.8
Duzib147G0914 Durio zibethinus HOM05D004665 ORTHO05D006264 1.0e-22 110.5 71 76.1
HanXRQChr14g0451551 Helianthus annuus HOM05D004665 ORTHO05D006264 1.0e-22 110.5 71 74.6
AT3G26670 Arabidopsis thaliana HOM05D004665 ORTHO05D006264 1.7e-22 109.8 75 69.3
BcaC03g17377 Brassica carinata HOM05D004665 ORTHO05D006264 1.7e-22 109.8 75 70.7
BolC2t11394H Brassica oleracea HOM05D004665 ORTHO05D006264 1.7e-22 109.8 75 70.7
PGSC0003DMG400025244 Solanum tuberosum HOM05D004665 ORTHO05D006264 3.9e-22 108.6 70 74.3
Solyc01g086730.4 Solanum lycopersicum HOM05D004665 ORTHO05D006264 5.0e-22 108.2 70 74.3
Sopen01g033730 Solanum pennellii HOM05D004665 ORTHO05D006264 5.0e-22 108.2 70 74.3
Manes.11G073500 Manihot esculenta HOM05D004665 ORTHO05D006264 8.6e-22 107.5 71 71.8
Peaxi162Scf00058g00033 Petunia axillaris HOM05D004665 ORTHO05D006264 1.1e-21 107.1 72 75.0
ClCG05G012480 Citrullus lanatus HOM05D004665 ORTHO05D006264 2.5e-21 105.9 70 72.9
MELO3C014760.2 Cucumis melo HOM05D004665 ORTHO05D006264 3.3e-21 105.5 70 72.9
CsaV3_3G020050 Cucumis sativus L. HOM05D004665 ORTHO05D006264 3.3e-21 105.5 70 72.9
Sed0011932 Sechium edule HOM05D004665 ORTHO05D006264 3.3e-21 105.5 70 72.9
Mapoly0166s0011 Marchantia polymorpha HOM05D004665 ORTHO05D006264 7.3e-21 104.4 71 73.2
AagrBONN_evm.TU.Sc2ySwM_117.2741 Anthoceros agrestis HOM05D004665 ORTHO05D006264 2.8e-20 102.4 74 66.2
Pp3c8_3640 Physcomitrium patens HOM05D004665 ORTHO05D006264 6.1e-20 101.3 66 75.8
Atru.chr1.2008 Acer truncatum HOM05D004665 ORTHO05D006264 1.8e-19 99.8 66 74.2
SGA_v2.0_scaffold44G16957 Striga asiatica HOM05D004665 ORTHO05D006264 3.1e-19 99.0 108 50.9
Pp3c3_36320 Physcomitrium patens HOM05D004665 ORTHO05D006264 5.2e-19 98.2 66 72.7
SMO266G0026 Selaginella moellendorffii HOM05D004665 ORTHO05D006264 5.2e-19 98.2 69 69.6
CBR_g40440 Chara braunii HOM05D004665 ORTHO05D006264 5.4e-16 88.2 70 60.0
Actinidia37709 Actinidia chinensis HOM05D004665 ORTHO05D006264 7.8e-15 84.3 75 56.0
SEGI_32568 Sequoiadendron giganteum HOM05D000190 ORTHO05D000113 1.7e-14 83.2 48 75.0
Actinidia19542 Actinidia chinensis HOM05D004665 ORTHO05D006264 1.1e-13 80.5 61 62.3
Lj7A619T48 Lonicera japonica HOM05D004665 ORTHO05D006264 2.5e-13 79.3 157 35.0
Cre08.g358400 Chlamydomonas reinhardtii HOM05D004665 ORTHO05D006264 6.8e-11 71.2 64 54.7
SEGI_26426 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 6.8e-11 71.2 44 70.5
FAN02G3871 Fragaria x ananassa HOM05D004665 ORTHO05D006264 1.2e-10 70.5 40 82.5
Cfa007634 Carpinus fangiana HOM05D004665 ORTHO05D006264 1.5e-10 70.1 59 66.1
Haze_14979 Corylus avellana HOM05D004665 ORTHO05D006264 2.0e-10 69.7 40 82.5
Cre12.g523100 Chlamydomonas reinhardtii HOM05D004665 ORTHO05D006264 3.4e-10 68.9 64 51.6
Zm00001eb393410 Zea mays HOM05D004665 ORTHO05D006264 1.1e-08 63.9 40 72.5


User provided reference genes

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