Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_21153 Sequoiadendron giganteum HOM05D003623 ORTHO05D020825 1.8e-14 84.3 40 100.0
SEGI_29220 Sequoiadendron giganteum HOM05D003623 ORTHO05D004335 1.8e-14 84.3 40 100.0
SEGI_39955 Sequoiadendron giganteum HOM05D013234 ORTHO05D020825 4.5e-13 79.7 37 100.0
MBI07_g12178_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D004335 6.4e-12 75.9 40 85.0
Nn1g08118 Nelumbo nucifera HOM05D003623 ORTHO05D004335 6.4e-12 75.9 40 85.0
COL.COLO4_35966 Corchorus olitorius HOM05D003623 ORTHO05D004335 1.1e-11 75.1 40 85.0
CiPaw.01G112500 Carya illinoinensis HOM05D003623 ORTHO05D004335 1.4e-11 74.7 40 82.5
Thecc.04G190700 Theobroma cacao HOM05D003623 ORTHO05D004335 1.4e-11 74.7 40 82.5
HPP92_000441 Vanilla planifolia HOM05D003623 ORTHO05D004335 2.4e-11 73.9 40 82.5
Cfa008669 Carpinus fangiana HOM05D003623 ORTHO05D004335 3.2e-11 73.6 40 82.5
CDE05G0087 Ceratophyllum demersum HOM05D003623 ORTHO05D004335 3.2e-11 73.6 40 80.0
CDE05G1163 Ceratophyllum demersum HOM05D003623 ORTHO05D004335 3.2e-11 73.6 40 80.0
Haze_11688 Corylus avellana HOM05D003623 ORTHO05D004335 3.2e-11 73.6 40 82.5
PSO675G4779 Papaver somniferum HOM05D003623 ORTHO05D004335 3.2e-11 73.6 40 85.0
Pp3c5_10370 Physcomitrium patens HOM05D003623 ORTHO05D004335 3.2e-11 73.6 40 80.0
AagrBONN_evm.TU.Sc2ySwM_117.2298 Anthoceros agrestis HOM05D003623 ORTHO05D004335 4.2e-11 73.2 40 77.5
Migut.G00821 Erythranthe guttata HOM05D003623 ORTHO05D004335 4.2e-11 73.2 40 80.0
Migut.G01152 Erythranthe guttata HOM05D003623 ORTHO05D004335 4.2e-11 73.2 40 80.0
Ah.13g077780 Amaranthus hybridus HOM05D003623 ORTHO05D004335 5.4e-11 72.8 40 82.5
Nn8g41257 Nelumbo nucifera HOM05D003623 ORTHO05D004335 5.4e-11 72.8 40 80.0
SEGI_12158 Sequoiadendron giganteum HOM05D003623 ORTHO05D004335 5.4e-11 72.8 40 80.0
Aqoxy2G03998 Aquilegia oxysepala HOM05D003623 ORTHO05D004335 7.1e-11 72.4 40 82.5
CANSAT78G1699 Cannabis sativa HOM05D003623 ORTHO05D004335 7.1e-11 72.4 40 77.5
Eucgr.L00641 Eucalyptus grandis HOM05D003623 ORTHO05D004335 7.1e-11 72.4 40 82.5
Mapoly0034s0037 Marchantia polymorpha HOM05D003623 ORTHO05D004335 7.1e-11 72.4 40 75.0
PSO017G5742 Papaver somniferum HOM05D003623 ORTHO05D004335 7.1e-11 72.4 40 82.5
Pp3c6_13940 Physcomitrium patens HOM05D003623 ORTHO05D004335 7.1e-11 72.4 40 77.5
SalBow2G2507 Salvia bowleyana HOM05D003623 ORTHO05D004335 7.1e-11 72.4 40 82.5
TAR362G0319 Trochodendron aralioides HOM05D003623 ORTHO05D004335 7.1e-11 72.4 40 80.0
Actinidia20848 Actinidia chinensis HOM05D003623 ORTHO05D004335 9.3e-11 72.0 40 80.0
Sc16g0010040 Simmondsia chinensis HOM05D003623 ORTHO05D004335 9.3e-11 72.0 40 80.0
Gohir.A10G130700 Gossypium hirsutum HOM05D003623 ORTHO05D004335 1.2e-10 71.6 40 80.0
Gohir.D10G135700 Gossypium hirsutum HOM05D003623 ORTHO05D004335 1.2e-10 71.6 40 80.0
Hund19026 Selenicereus undatus HOM05D003623 ORTHO05D004335 1.2e-10 71.6 40 77.5
TAR633G0333 Trochodendron aralioides HOM05D003623 ORTHO05D004335 1.2e-10 71.6 40 77.5
Duzib151G0791 Durio zibethinus HOM05D003623 ORTHO05D004335 1.6e-10 71.2 40 80.0
Peaxi162Scf00423g00724 Petunia axillaris HOM05D003623 ORTHO05D004335 1.6e-10 71.2 39 79.5
SMO137G0331 Selaginella moellendorffii HOM05D013234 ORTHO05D020825 1.6e-10 71.2 37 83.8
SMO137G0392 Selaginella moellendorffii HOM05D013234 ORTHO05D020825 1.6e-10 71.2 37 83.8
GSVIVG01026359001 Vitis vinifera HOM05D003623 ORTHO05D004335 1.6e-10 71.2 40 80.0
MSTRG.9774 Avicennia marina HOM05D003623 ORTHO05D004335 2.1e-10 70.9 40 77.5
CAN.G1310.13 Capsicum annuum HOM05D003623 ORTHO05D004335 2.1e-10 70.9 40 77.5
CBR_g46307 Chara braunii HOM05D003623 ORTHO05D004335 2.1e-10 70.9 40 75.0
Solyc05g053835.2 Solanum lycopersicum HOM05D003623 ORTHO05D004335 2.1e-10 70.9 40 77.5
Sopen05g032310 Solanum pennellii HOM05D003623 ORTHO05D004335 2.1e-10 70.9 40 77.5
PGSC0003DMG400015752 Solanum tuberosum HOM05D003623 ORTHO05D004335 2.1e-10 70.9 40 77.5
ECA238G2410 Erigeron canadensis HOM05D003623 ORTHO05D004335 2.7e-10 70.5 40 77.5
Thecc.05G264600 Theobroma cacao HOM05D003623 ORTHO05D004335 2.7e-10 70.5 40 80.0
Cc03_g09530 Coffea canephora HOM05D003623 ORTHO05D004335 3.5e-10 70.1 40 80.0
HanXRQChr14g0436771 Helianthus annuus HOM05D003623 ORTHO05D004335 3.5e-10 70.1 40 77.5
Lsat_1_v5_gn_2_49120 Lactuca sativa HOM05D003623 ORTHO05D004335 3.5e-10 70.1 40 77.5
Zm00001eb241190 Zea mays HOM05D003623 ORTHO05D004335 3.5e-10 70.1 40 80.0
arahy.Tifrunner.gnm1.ann1.LG1RTX Arachis hypogaea HOM05D003623 ORTHO05D004335 4.6e-10 69.7 40 80.0
Duzib128G0757 Durio zibethinus HOM05D003623 ORTHO05D004335 4.6e-10 69.7 40 80.0
Gohir.D13G171700 Gossypium hirsutum HOM05D003623 ORTHO05D004335 4.6e-10 69.7 40 80.0
Gorai.013G189100 Gossypium raimondii HOM05D003623 ORTHO05D004335 4.6e-10 69.7 40 80.0
Hma1.2p1_0984F.1_g244260 Hydrangea macrophylla HOM05D003623 ORTHO05D004335 4.6e-10 69.7 40 77.5
Nitab4.5_0002260g0250 Nicotiana tabacum HOM05D003623 ORTHO05D004335 4.6e-10 69.7 40 75.0
Nitab4.5_0003358g0040 Nicotiana tabacum HOM05D003623 ORTHO05D004335 4.6e-10 69.7 40 75.0
Peaxi162Scf00286g00829 Petunia axillaris HOM05D003623 ORTHO05D004335 4.6e-10 69.7 40 75.0
Sc13g0000570 Simmondsia chinensis HOM05D003623 ORTHO05D004335 4.6e-10 69.7 40 75.0
Actinidia35820 Actinidia chinensis HOM05D003623 ORTHO05D004335 6.0e-10 69.3 40 75.0
AUR62006999 Chenopodium quinoa HOM05D003623 ORTHO05D004335 6.0e-10 69.3 40 77.5
Duzib177G0921 Durio zibethinus HOM05D003623 ORTHO05D004335 6.0e-10 69.3 40 77.5
Manes.08G142800 Manihot esculenta HOM05D003623 ORTHO05D004335 6.0e-10 69.3 40 77.5
Hund07163 Selenicereus undatus HOM05D003623 ORTHO05D004335 6.0e-10 69.3 40 75.0
TWI34G1961 Tripterygium wilfordii HOM05D003623 ORTHO05D004335 6.0e-10 69.3 40 80.0
TWI60G1592 Tripterygium wilfordii HOM05D003623 ORTHO05D004335 6.0e-10 69.3 40 80.0
Atru.chr2.1140 Acer truncatum HOM05D003623 ORTHO05D004335 7.9e-10 68.9 40 80.0
CSS0034552 Camellia sinensis var. sinensis HOM05D003623 ORTHO05D004335 7.9e-10 68.9 40 77.5
ClCG03G011450 Citrullus lanatus HOM05D003623 ORTHO05D004335 7.9e-10 68.9 40 77.5
MELO3C010102.2 Cucumis melo HOM05D003623 ORTHO05D004335 7.9e-10 68.9 40 77.5
CsaV3_1G045020 Cucumis sativus L. HOM05D003623 ORTHO05D004335 7.9e-10 68.9 40 77.5
Dinv10856 Davidia involucrata HOM05D003623 ORTHO05D004335 7.9e-10 68.9 40 77.5
Glyma.10G168700 Glycine max HOM05D003623 ORTHO05D004335 7.9e-10 68.9 40 80.0
Lj6A347G37 Lonicera japonica HOM05D003623 ORTHO05D004335 7.9e-10 68.9 40 77.5
Lj5g0011380 Lotus japonicus HOM05D003623 ORTHO05D004335 7.9e-10 68.9 40 80.0
Lalb_Chr21g0311321 Lupinus albus HOM05D003623 ORTHO05D004335 7.9e-10 68.9 40 80.0
Sed0012930 Sechium edule HOM05D003623 ORTHO05D004335 7.9e-10 68.9 40 77.5
ATR0561G246 Amborella trichopoda HOM05D003623 ORTHO05D004335 1.0e-09 68.6 40 75.0
CAN.G2073.4 Capsicum annuum HOM05D003623 ORTHO05D004335 1.0e-09 68.6 40 72.5
FvH4_6g01310 Fragaria vesca HOM05D003623 ORTHO05D004335 1.0e-09 68.6 40 77.5
FAN05G2056 Fragaria x ananassa HOM05D003623 ORTHO05D004335 1.0e-09 68.6 40 77.5
FAN09G2957 Fragaria x ananassa HOM05D003623 ORTHO05D004335 1.0e-09 68.6 40 77.5
Gohir.A13G162400 Gossypium hirsutum HOM05D003623 ORTHO05D004335 1.0e-09 68.6 40 80.0
Gohir.D11G252600 Gossypium hirsutum HOM05D003623 ORTHO05D004335 1.0e-09 68.6 40 80.0
Gorai.007G271100 Gossypium raimondii HOM05D003623 ORTHO05D004335 1.0e-09 68.6 40 80.0
RcHm_v2.0_Chr3g0448861 Rosa chinensis HOM05D003623 ORTHO05D004335 1.0e-09 68.6 40 77.5
Solyc09g097830.4 Solanum lycopersicum HOM05D003623 ORTHO05D004335 1.0e-09 68.6 40 72.5
CSS0050373 Camellia sinensis var. sinensis HOM05D003623 ORTHO05D004335 1.3e-09 68.2 40 72.5
Ciclev10018711m.g Citrus clementina HOM05D003623 ORTHO05D004335 1.3e-09 68.2 40 77.5
MSTRG.4272 Avicennia marina HOM05D003623 ORTHO05D004335 1.8e-09 67.8 40 75.0
Cpa.g.sc51.46 Carica papaya HOM05D003623 ORTHO05D004335 1.8e-09 67.8 40 77.5
MD12G1253100 Malus domestica HOM05D003623 ORTHO05D004335 1.8e-09 67.8 40 77.5
Medtr1g079510 Medicago truncatula HOM05D003623 ORTHO05D004335 1.8e-09 67.8 40 80.0
Nitab4.5_0000309g0320 Nicotiana tabacum HOM05D003623 ORTHO05D004335 1.8e-09 67.8 40 75.0
Oeu002933.1 Olea europaea HOM05D003623 ORTHO05D004335 1.8e-09 67.8 40 72.5
Psat6g140680 Pisum sativum HOM05D003623 ORTHO05D004335 1.8e-09 67.8 40 80.0
Prupe.6G355200 Prunus persica HOM05D003623 ORTHO05D004335 1.8e-09 67.8 40 77.5
QL03p033428 Quercus lobata HOM05D003623 ORTHO05D004335 1.8e-09 67.8 40 77.5
TPR.G31601 Trifolium pratense HOM05D003623 ORTHO05D004335 1.8e-09 67.8 40 80.0
VMungo0720G0796 Vigna mungo HOM05D003623 ORTHO05D004335 1.8e-09 67.8 40 80.0
AL3G14190 Arabidopsis lyrata HOM05D003623 ORTHO05D004335 2.3e-09 67.4 40 77.5
AT3G04240 Arabidopsis thaliana HOM05D003623 ORTHO05D004335 2.3e-09 67.4 40 77.5
Carub.0003s0346 Capsella rubella HOM05D003623 ORTHO05D004335 2.3e-09 67.4 40 77.5
Potri.019G025600 Populus trichocarpa HOM05D003623 ORTHO05D004335 2.3e-09 67.4 40 80.0
THA.LOC104820750 Tarenaya hassleriana HOM05D003623 ORTHO05D004335 2.3e-09 67.4 40 75.0
THA.LOC104821603 Tarenaya hassleriana HOM05D003623 ORTHO05D004335 2.3e-09 67.4 40 75.0
COL.COLO4_38177 Corchorus olitorius HOM05D003623 ORTHO05D004335 3.0e-09 67.0 40 77.5
Gohir.A11G243000 Gossypium hirsutum HOM05D003623 ORTHO05D004335 3.0e-09 67.0 40 77.5
Phvul.L002532 Phaseolus vulgaris HOM05D003623 ORTHO05D004335 3.0e-09 67.0 40 77.5
SMO347G0623 Selaginella moellendorffii HOM05D003623 ORTHO05D004335 3.0e-09 67.0 40 72.5
Sopen09g035770 Solanum pennellii HOM05D003623 ORTHO05D004335 3.0e-09 67.0 40 72.5
FAN02G2773 Fragaria x ananassa HOM05D003623 ORTHO05D004335 3.9e-09 66.6 39 76.9
TWI34G1660 Tripterygium wilfordii HOM05D003623 ORTHO05D004335 3.9e-09 66.6 40 77.5
EL10Ac3g07439 Beta vulgaris HOM05D003623 ORTHO05D004335 5.1e-09 66.2 40 72.5
A01p40930 Brassica napus HOM05D003623 ORTHO05D004335 5.1e-09 66.2 40 77.5
BNapus_Darmor_BZH_scaffold_78p00780 Brassica napus HOM05D003623 ORTHO05D004335 5.1e-09 66.2 40 77.5
BolC1t05759H Brassica oleracea HOM05D003623 ORTHO05D004335 5.1e-09 66.2 40 77.5
BraA01t04529Z Brassica rapa HOM05D003623 ORTHO05D004335 5.1e-09 66.2 40 77.5
CARHR078390 Cardamine hirsuta HOM05D003623 ORTHO05D004335 5.1e-09 66.2 40 77.5
DCAR_026670 Daucus carota HOM05D003623 ORTHO05D004335 5.1e-09 66.2 40 75.0
Thhalv10019996m.g Eutrema salsugineum HOM05D003623 ORTHO05D004335 5.1e-09 66.2 40 77.5
MD04G1235300 Malus domestica HOM05D003623 ORTHO05D004335 5.1e-09 66.2 39 76.9
Potri.013G051400 Populus trichocarpa HOM05D003623 ORTHO05D004335 5.1e-09 66.2 40 77.5
Sp3g03150 Schrenkiella parvula HOM05D003623 ORTHO05D004335 5.1e-09 66.2 40 77.5
CANSAT54G1818 Cannabis sativa HOM05D003623 ORTHO05D004335 6.7e-09 65.9 40 75.0
AUR62018537 Chenopodium quinoa HOM05D003623 ORTHO05D004335 6.7e-09 65.9 40 72.5
AUR62020880 Chenopodium quinoa HOM05D003623 ORTHO05D004335 6.7e-09 65.9 40 72.5
Dinv32173 Davidia involucrata HOM05D003623 ORTHO05D004335 6.7e-09 65.9 40 70.0
Gorai.011G150500 Gossypium raimondii HOM05D003623 ORTHO05D004335 6.7e-09 65.9 46 69.6
HanXRQChr01g0021981 Helianthus annuus HOM05D003623 ORTHO05D004335 6.7e-09 65.9 40 72.5
Manes.09G145400 Manihot esculenta HOM05D003623 ORTHO05D004335 6.7e-09 65.9 40 77.5
Rhsim04G0132100 Rhododendron simsii HOM05D003623 ORTHO05D004335 6.7e-09 65.9 40 72.5
QL06p027597 Quercus lobata HOM05D003623 ORTHO05D004335 1.5e-08 64.7 33 84.8
Sabra13G0046700 Salix brachista HOM05D003623 ORTHO05D004335 1.5e-08 64.7 40 75.0
Duzib268G0561 Durio zibethinus HOM05D003623 ORTHO05D004335 1.9e-08 64.3 35 80.0
HPP92_006960 Vanilla planifolia HOM05D003623 ORTHO05D004335 1.9e-08 64.3 40 72.5
Sabra19G0035000 Salix brachista HOM05D003623 ORTHO05D004335 2.5e-08 63.9 40 72.5
Aa31LG5G14720 Aethionema arabicum HOM05D003623 ORTHO05D004335 3.3e-08 63.5 40 72.5
arahy.Tifrunner.gnm1.ann1.3CZ4H2 Arachis hypogaea HOM05D003623 ORTHO05D004335 4.3e-08 63.2 40 72.5
Aa31LG2G2050 Aethionema arabicum HOM05D003623 ORTHO05D004335 9.6e-08 62.0 40 67.5
arahy.Tifrunner.gnm1.ann1.97NMUU Arachis hypogaea HOM05D003623 ORTHO05D004335 1.3e-07 61.6 40 70.0
MBI15_g14467_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D007518 2.1e-07 60.8 35 74.3
Glyma.20G221000 Glycine max HOM05D003623 ORTHO05D004335 6.2e-07 59.3 37 73.0
EL10Ac4g09791 Beta vulgaris HOM05D003623 ORTHO05D004335 3.1e-06 57.0 38 63.2
FAN05G1824 Fragaria x ananassa HOM05D003623 ORTHO05D004335 3.1e-06 57.0 33 75.8
CAN.G2073.2 Capsicum annuum HOM05D003623 ORTHO05D004335 4.0e-06 56.6 39 56.4


User provided reference genes

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