Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 4.6e-280 967.2 488 100.0
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 1.3e-85 321.2 470 43.6
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 5.4e-79 299.3 495 39.2
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 2.5e-76 290.4 488 41.2
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 4.6e-70 269.6 481 39.5
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 1.5e-68 264.6 422 40.5
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 1.5e-68 264.6 500 38.6
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 1.6e-67 261.2 446 42.2
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 2.1e-67 260.8 488 37.7
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 1.8e-66 257.7 488 37.7
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 3.1e-66 256.9 490 37.6
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 4.0e-66 256.5 492 38.0
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 4.0e-66 256.5 426 40.6
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 4.0e-66 256.5 491 38.1
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 5.3e-66 256.1 490 38.2
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 6.9e-66 255.8 480 38.5
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 1.2e-65 255.0 485 37.7
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.2e-65 255.0 493 38.1
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.5e-65 254.6 444 40.3
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 1.5e-65 254.6 426 39.7
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 2.6e-65 253.8 505 37.8
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 3.4e-65 253.4 494 38.5
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 4.5e-65 253.1 420 40.7
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 4.5e-65 253.1 493 38.7
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 5.8e-65 252.7 490 38.6
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 1.3e-64 251.5 500 37.2
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 1.3e-64 251.5 489 37.2
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.3e-64 251.5 493 37.9
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 1.3e-64 251.5 506 37.5
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 1.7e-64 251.1 492 37.2
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 2.2e-64 250.8 486 38.3
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 6.5e-64 249.2 478 38.5
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 1.1e-63 248.4 502 37.5
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 1.9e-63 247.7 492 37.2
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 2.5e-63 247.3 477 39.0
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 3.2e-63 246.9 485 36.1
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 9.3e-63 245.4 476 36.3
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 1.2e-62 245.0 488 36.1
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 1.2e-62 245.0 510 35.7
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 3.5e-62 243.4 492 36.4
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 4.6e-62 243.0 422 39.1
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 6.0e-62 242.7 488 36.3
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 7.9e-62 242.3 469 36.9
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 1.0e-61 241.9 455 37.6
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 1.8e-61 241.1 489 36.8
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 1.8e-61 241.1 541 35.3
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 2.3e-61 240.7 481 36.2
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 2.3e-61 240.7 484 37.0
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 3.9e-61 240.0 463 35.9
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 3.9e-61 240.0 380 42.9
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 3.9e-61 240.0 488 36.1
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 6.7e-61 239.2 479 36.7
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 6.7e-61 239.2 485 36.5
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 8.7e-61 238.8 419 37.9
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 8.7e-61 238.8 474 36.3
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 1.1e-60 238.4 439 39.6
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 1.9e-60 237.7 524 35.5
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 7.4e-60 235.7 416 39.4
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 7.4e-60 235.7 431 37.4
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 7.4e-60 235.7 478 35.4
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 7.4e-60 235.7 485 37.3
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 1.3e-59 235.0 480 36.0
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 1.3e-59 235.0 507 35.7
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 1.3e-59 235.0 476 35.9
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 1.6e-59 234.6 477 36.7
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 2.8e-59 233.8 491 37.1
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 2.8e-59 233.8 520 35.4
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 4.8e-59 233.0 483 35.6
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 4.8e-59 233.0 487 38.0
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 6.3e-59 232.6 465 38.1
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 8.2e-59 232.3 492 33.3
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 1.4e-58 231.5 544 36.4
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 3.1e-58 230.3 500 35.6
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 6.9e-58 229.2 541 34.2
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 6.9e-58 229.2 435 37.9
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 9.0e-58 228.8 493 35.5
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 2.0e-57 227.6 556 33.8
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 2.0e-57 227.6 478 35.4
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 3.4e-57 226.9 376 41.8
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 7.6e-57 225.7 405 36.8
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 1.0e-56 225.3 507 34.1
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 2.2e-56 224.2 508 35.0
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 3.8e-56 223.4 496 35.7
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 6.5e-56 222.6 508 33.7
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 4.2e-55 219.9 444 36.3
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 4.2e-55 219.9 431 37.1
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 5.5e-55 219.5 501 33.3
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 9.3e-55 218.8 486 35.8
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 2.1e-54 217.6 547 33.3
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 2.7e-54 217.2 452 35.6
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 4.6e-54 216.5 482 36.7
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 7.9e-54 215.7 451 35.3
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 1.0e-53 215.3 432 36.1
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 1.3e-53 214.9 547 33.1
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 1.3e-53 214.9 518 33.8
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 1.8e-53 214.5 511 33.7
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 1.8e-53 214.5 414 37.4
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 4.3e-52 209.9 443 34.5
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 5.7e-52 209.5 427 35.1
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 5.7e-52 209.5 534 34.3
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 3.1e-50 203.8 461 35.1
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 6.9e-50 202.6 483 34.0
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 2.6e-49 200.7 498 33.9
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 5.9e-49 199.5 443 35.9
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 1.0e-48 198.7 524 32.1
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 2.2e-48 197.6 416 35.1
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 2.2e-48 197.6 341 37.8
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 4.2e-47 193.4 559 29.7
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 3.6e-46 190.3 274 44.9
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 4.6e-46 189.9 423 35.5
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 6.1e-46 189.5 530 32.5
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 5.1e-45 186.4 266 43.6
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 1.7e-43 181.4 242 45.9
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 8.2e-43 179.1 512 31.1
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 8.2e-43 179.1 186 51.6
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 1.5e-41 174.9 491 31.2
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 3.4e-41 173.7 199 48.7
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 4.5e-41 173.3 199 48.7
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 2.5e-39 167.5 465 31.2
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 5.5e-39 166.4 229 44.1
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 8.8e-29 132.5 109 66.1
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 2.0e-20 104.8 363 29.2
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 7.5e-20 102.8 310 30.6
BcaNung00812 Brassica carinata HOM05D005852 ORTHO05D006688 2.8e-14 84.3 95 45.3
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 6.8e-13 79.7 218 28.4
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 3.7e-11 73.9 82 51.2
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 3.1e-10 70.9 141 32.6
HPP92_012783 Vanilla planifolia HOM05D005852 ORTHO05D006688 1.3e-08 65.5 95 45.3
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 8.6e-08 62.8 95 44.2
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 4.3e-07 60.5 293 27.0
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 3.6e-06 57.4 169 30.2


User provided reference genes

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