Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_20985 Sequoiadendron giganteum HOM05D006544 ORTHO05D008757 7.1e-68 260.4 124 100.0
SEGI_38453 Sequoiadendron giganteum HOM05D006544 ORTHO05D008757 1.3e-66 256.1 122 100.0
Manes.09G066600 Manihot esculenta HOM05D006544 ORTHO05D008757 6.7e-58 227.3 122 82.8
Ciclev10012670m.g Citrus clementina HOM05D006544 ORTHO05D008757 8.7e-58 226.9 122 84.4
Thecc.05G065700 Theobroma cacao HOM05D006544 ORTHO05D008757 8.7e-58 226.9 122 83.6
Lalb_Chr06g0171711 Lupinus albus HOM05D006544 ORTHO05D008757 1.1e-57 226.5 122 83.6
TAR636G3123 Trochodendron aralioides HOM05D006544 ORTHO05D008757 1.1e-57 226.5 122 84.4
Nn2g11585 Nelumbo nucifera HOM05D006544 ORTHO05D008757 1.5e-57 226.1 122 84.4
GSVIVG01025731001 Vitis vinifera HOM05D006544 ORTHO05D008757 1.5e-57 226.1 122 82.8
Potri.016G092300 Populus trichocarpa HOM05D006544 ORTHO05D008757 1.9e-57 225.7 122 82.8
QL07p043583 Quercus lobata HOM05D006544 ORTHO05D008757 1.9e-57 225.7 121 83.5
Thhalv10014610m.g Eutrema salsugineum HOM05D006544 ORTHO05D008757 2.5e-57 225.3 122 83.6
Medtr1g063350 Medicago truncatula HOM05D006544 ORTHO05D008757 2.5e-57 225.3 122 82.8
Sabra16G0097900 Salix brachista HOM05D006544 ORTHO05D008757 3.3e-57 224.9 124 81.5
MBI18_g04983_MAGBIO Magnolia biondii HOM05D006544 ORTHO05D008757 4.3e-57 224.6 120 85.0
Gohir.A09G147100 Gossypium hirsutum HOM05D006544 ORTHO05D008757 5.7e-57 224.2 122 82.0
Lj5g0006333 Lotus japonicus HOM05D006544 ORTHO05D008757 7.4e-57 223.8 122 82.8
PGR004G0128 Punica granatum HOM05D006544 ORTHO05D008757 7.4e-57 223.8 122 82.8
AL8G27480 Arabidopsis lyrata HOM05D006544 ORTHO05D008757 9.6e-57 223.4 122 82.8
Cfa017605 Carpinus fangiana HOM05D006544 ORTHO05D008757 9.6e-57 223.4 119 83.2
Dinv37314 Davidia involucrata HOM05D006544 ORTHO05D008757 1.3e-56 223.0 122 82.0
Duzib093G0756 Durio zibethinus HOM05D006544 ORTHO05D008757 1.3e-56 223.0 122 81.1
TWI74G1602 Tripterygium wilfordii HOM05D006544 ORTHO05D008757 1.6e-56 222.6 122 82.8
CANSAT80G1747 Cannabis sativa HOM05D006544 ORTHO05D008757 2.1e-56 222.2 122 80.3
Psat6g072960 Pisum sativum HOM05D006544 ORTHO05D008757 2.1e-56 222.2 122 82.0
Solyc10g084040.2 Solanum lycopersicum HOM05D006544 ORTHO05D008757 2.1e-56 222.2 122 81.1
Sopen10g033470 Solanum pennellii HOM05D006544 ORTHO05D008757 2.1e-56 222.2 122 81.1
TPR.G11258 Trifolium pratense HOM05D006544 ORTHO05D008757 2.1e-56 222.2 122 82.0
Ca_11495_v3 Cicer arietinum L. HOM05D006544 ORTHO05D008757 2.8e-56 221.9 122 82.8
Gohir.D09G142700 Gossypium hirsutum HOM05D006544 ORTHO05D008757 2.8e-56 221.9 122 80.3
Gorai.006G164200 Gossypium raimondii HOM05D006544 ORTHO05D008757 2.8e-56 221.9 122 80.3
Nitab4.5_0010279g0020 Nicotiana tabacum HOM05D006544 ORTHO05D008757 2.8e-56 221.9 122 80.3
Sp6g39380 Schrenkiella parvula HOM05D006544 ORTHO05D008757 2.8e-56 221.9 122 82.8
AUR62040358 Chenopodium quinoa HOM05D006544 ORTHO05D008757 3.7e-56 221.5 122 82.0
EL10Ac7g16625 Beta vulgaris HOM05D006544 ORTHO05D008757 4.8e-56 221.1 122 82.8
CAN.G1169.17 Capsicum annuum HOM05D006544 ORTHO05D008757 4.8e-56 221.1 122 81.1
CiPaw.09G172700 Carya illinoinensis HOM05D006544 ORTHO05D008757 4.8e-56 221.1 119 82.4
PGSC0003DMG400010472 Solanum tuberosum HOM05D006544 ORTHO05D008757 4.8e-56 221.1 122 80.3
Actinidia28904 Actinidia chinensis HOM05D006544 ORTHO05D008757 8.2e-56 220.3 122 80.3
AagrBONN_evm.TU.Sc2ySwM_344.816 Anthoceros agrestis HOM05D006544 ORTHO05D008757 1.1e-55 219.9 122 80.3
AT5G52970 Arabidopsis thaliana HOM05D006544 ORTHO05D008757 1.1e-55 219.9 122 82.0
Glyma.10G056700 Glycine max HOM05D006544 ORTHO05D008757 1.1e-55 219.9 122 81.1
Aa31LG1G21780 Aethionema arabicum HOM05D006544 ORTHO05D008757 1.4e-55 219.5 122 81.1
Nitab4.5_0000063g0030 Nicotiana tabacum HOM05D006544 ORTHO05D008757 1.4e-55 219.5 122 80.3
Sed0018427 Sechium edule HOM05D006544 ORTHO05D008757 1.4e-55 219.5 122 82.0
Carub.0008s1316 Capsella rubella HOM05D006544 ORTHO05D008757 1.8e-55 219.2 122 82.0
arahy.Tifrunner.gnm1.ann1.4P9CL0 Arachis hypogaea HOM05D006544 ORTHO05D008757 2.4e-55 218.8 119 81.5
arahy.Tifrunner.gnm1.ann1.8Z8BZM Arachis hypogaea HOM05D006544 ORTHO05D008757 2.4e-55 218.8 119 81.5
PSO339G0933 Papaver somniferum HOM05D006544 ORTHO05D008757 2.4e-55 218.8 122 80.3
PSO801G0526 Papaver somniferum HOM05D006544 ORTHO05D008757 2.4e-55 218.8 122 80.3
VMungo0720G1694 Vigna mungo HOM05D006544 ORTHO05D008757 2.4e-55 218.8 119 84.0
Phvul.007G219800 Phaseolus vulgaris HOM05D006544 ORTHO05D008757 3.1e-55 218.4 120 82.5
THA.LOC104816347 Tarenaya hassleriana HOM05D006544 ORTHO05D008757 3.1e-55 218.4 122 78.7
BcaC03g13011 Brassica carinata HOM05D006544 ORTHO05D008757 4.1e-55 218.0 120 81.7
BraA02t04758Z Brassica rapa HOM05D006544 ORTHO05D008757 4.1e-55 218.0 120 81.7
ClCG04G009280 Citrullus lanatus HOM05D006544 ORTHO05D008757 4.1e-55 218.0 120 81.7
Lj2A122G33 Lonicera japonica HOM05D006544 ORTHO05D008757 4.1e-55 218.0 122 80.3
RcHm_v2.0_Chr3g0470171 Rosa chinensis HOM05D006544 ORTHO05D008757 4.1e-55 218.0 122 78.7
MELO3C024463.2 Cucumis melo HOM05D006544 ORTHO05D008757 5.3e-55 217.6 120 81.7
Migut.L01701 Erythranthe guttata HOM05D006544 ORTHO05D008757 5.3e-55 217.6 122 80.3
FvH4_6g16320 Fragaria vesca HOM05D006544 ORTHO05D008757 5.3e-55 217.6 122 77.9
FAN05G5519 Fragaria x ananassa HOM05D006544 ORTHO05D008757 5.3e-55 217.6 122 78.7
Ah.15g092510 Amaranthus hybridus HOM05D006544 ORTHO05D008757 6.9e-55 217.2 122 81.1
ATR1093G019 Amborella trichopoda HOM05D006544 ORTHO05D008757 6.9e-55 217.2 122 80.3
HanXRQChr13g0401051 Helianthus annuus HOM05D006544 ORTHO05D008757 6.9e-55 217.2 122 78.7
Aqoxy2G01774 Aquilegia oxysepala HOM05D006544 ORTHO05D008757 1.2e-54 216.5 120 80.0
BcaB05g21832 Brassica carinata HOM05D006544 ORTHO05D008757 1.2e-54 216.5 120 80.0
Cpa.g.sc54.75 Carica papaya HOM05D006544 ORTHO05D008757 1.2e-54 216.5 118 82.2
CsaV3_6G039870 Cucumis sativus L. HOM05D006544 ORTHO05D008757 1.2e-54 216.5 122 80.3
Sc02g0001640 Simmondsia chinensis HOM05D006544 ORTHO05D008757 1.2e-54 216.5 121 79.3
DCAR_020819 Daucus carota HOM05D006544 ORTHO05D008757 1.5e-54 216.1 122 79.5
Cc06_g04210 Coffea canephora HOM05D006544 ORTHO05D008757 2.0e-54 215.7 122 77.9
Eucgr.A01683 Eucalyptus grandis HOM05D006544 ORTHO05D008757 2.0e-54 215.7 119 79.8
vmacro07290 Vaccinium macrocarpon HOM05D006544 ORTHO05D008757 2.0e-54 215.7 122 78.7
FAN09G3810 Fragaria x ananassa HOM05D006544 ORTHO05D008757 2.6e-54 215.3 119 79.8
SGA_v2.0_scaffold224G42946 Striga asiatica HOM05D006544 ORTHO05D008757 2.6e-54 215.3 122 77.9
FAN14G3080 Fragaria x ananassa HOM05D006544 ORTHO05D008757 3.4e-54 214.9 119 79.0
CARHR265950 Cardamine hirsuta HOM05D006544 ORTHO05D008757 4.5e-54 214.5 122 79.5
AUR62042496 Chenopodium quinoa HOM05D006544 ORTHO05D008757 4.5e-54 214.5 131 76.3
Mapoly0064s0090 Marchantia polymorpha HOM05D006544 ORTHO05D008757 4.5e-54 214.5 122 79.5
Rhsim03G0092100 Rhododendron simsii HOM05D006544 ORTHO05D008757 5.8e-54 214.2 121 79.3
HPP92_009890 Vanilla planifolia HOM05D006544 ORTHO05D008757 5.8e-54 214.2 121 80.2
C02p01030 Brassica napus HOM05D006544 ORTHO05D008757 1.0e-53 213.4 121 81.0
BolC2t06093H Brassica oleracea HOM05D006544 ORTHO05D008757 1.0e-53 213.4 121 81.0
Oeu016983.1 Olea europaea HOM05D006544 ORTHO05D008757 1.0e-53 213.4 122 78.7
ECA233G4064 Erigeron canadensis HOM05D006544 ORTHO05D008757 1.3e-53 213.0 119 79.0
unitig_578.g16041 Utricularia gibba HOM05D006544 ORTHO05D008757 2.2e-53 212.2 122 76.2
SalBow5G2848 Salvia bowleyana HOM05D006544 ORTHO05D008757 2.9e-53 211.8 119 77.3
Lsat_1_v5_gn_6_25121 Lactuca sativa HOM05D006544 ORTHO05D008757 5.0e-53 211.1 120 76.7
MD12G1113500 Malus domestica HOM05D006544 ORTHO05D008757 5.0e-53 211.1 122 76.2
SMO118G0079 Selaginella moellendorffii HOM05D006544 ORTHO05D008757 1.4e-52 209.5 122 77.9
Peaxi162Scf00311g00059 Petunia axillaris HOM05D006544 ORTHO05D008757 2.5e-52 208.8 148 66.9
Pp3c13_11800 Physcomitrium patens HOM05D006544 ORTHO05D008757 5.5e-52 207.6 122 77.9
MSTRG.10320 Avicennia marina HOM05D006544 ORTHO05D008757 1.2e-51 206.5 120 75.8
COL.COLO4_26969 Corchorus olitorius HOM05D006544 ORTHO05D008757 1.6e-51 206.1 146 66.4
Zm00001eb088350 Zea mays HOM05D006544 ORTHO05D008757 6.1e-51 204.1 120 72.5
CDE09G0170 Ceratophyllum demersum HOM05D006544 ORTHO05D008757 6.7e-50 200.7 122 71.3
CBR_g11899 Chara braunii HOM05D006544 ORTHO05D008757 8.7e-50 200.3 121 74.4
Cre15.g636050 Chlamydomonas reinhardtii HOM05D006544 ORTHO05D008757 3.1e-47 191.8 121 70.2
AagrBONN_evm.TU.Sc2ySwM_228.4577 Anthoceros agrestis HOM05D006544 ORTHO05D008757 1.0e-45 186.8 103 80.6
MCO09G250 Micromonas commoda HOM05D006544 ORTHO05D008757 1.1e-41 173.3 119 63.0
Lj5g0024591 Lotus japonicus HOM05D006544 ORTHO05D008757 3.3e-41 171.8 96 79.2
Prupe.6G232400 Prunus persica HOM05D006544 ORTHO05D008757 3.3e-41 171.8 91 81.3
PRCOL_00002491 Prasinoderma coloniale HOM05D006544 ORTHO05D008757 5.7e-41 171.0 117 66.7
Cpa.g.sc4277.1 Carica papaya HOM05D006544 ORTHO05D008757 3.1e-39 165.2 115 70.4
Cpa.g.sc54.73 Carica papaya HOM05D006544 ORTHO05D008757 3.1e-39 165.2 115 70.4
Os07g0534000 Oryza sativa ssp. japonica HOM05D006544 ORTHO05D008757 4.1e-39 164.9 91 76.9
HPP92_009894 Vanilla planifolia HOM05D006544 ORTHO05D008757 5.7e-25 117.9 65 80.0
CSS0000889 Camellia sinensis var. sinensis HOM05D006544 ORTHO05D008757 6.1e-19 97.8 58 67.2
AagrBONN_evm.TU.Sc2ySwM_368.258 Anthoceros agrestis HOM05D006544 ORTHO05D021234 4.4e-17 91.7 109 39.4
CBR_g20266 Chara braunii HOM05D006544 ORTHO05D021234 1.1e-15 87.0 103 43.7
SalBow5G0971 Salvia bowleyana HOM05D008540 ORTHO05D009454 1.2e-14 83.6 54 64.8
SEGI_36386 Sequoiadendron giganteum HOM05D006544 ORTHO05D021234 8.0e-11 70.9 100 35.0
MCO12G278 Micromonas commoda HOM05D006544 ORTHO05D021234 5.7e-09 64.7 110 30.0
Medtr5g037320 Medicago truncatula HOM05D006544 ORTHO05D008757 6.3e-08 61.2 38 68.4
Cre03.g154600 Chlamydomonas reinhardtii HOM05D006544 ORTHO05D021234 9.2e-07 57.4 102 31.4


User provided reference genes

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