Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 0.0e+00 1103.6 798 100.0
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 5.4e-76 290.0 210 76.7
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 3.5e-75 287.3 201 78.1
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 6.0e-75 286.6 575 48.2
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 6.0e-75 286.6 196 79.6
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 1.3e-74 285.4 565 53.5
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 5.1e-74 283.5 170 87.1
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 1.1e-73 282.3 170 86.5
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 1.5e-73 282.0 165 90.3
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 1.5e-73 282.0 164 89.0
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 1.9e-73 281.6 183 81.4
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 3.3e-73 280.8 187 80.2
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 3.3e-73 280.8 164 88.4
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 5.6e-73 280.0 223 70.0
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 7.3e-73 279.6 164 88.4
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 7.3e-73 279.6 175 84.0
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 9.5e-73 279.3 175 83.4
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 9.5e-73 279.3 175 83.4
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 9.5e-73 279.3 174 84.5
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 9.5e-73 279.3 172 86.0
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 9.5e-73 279.3 172 84.9
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 1.2e-72 278.9 167 86.8
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 1.6e-72 278.5 167 86.8
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 2.1e-72 278.1 172 86.0
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 4.7e-72 276.9 204 75.0
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 4.7e-72 276.9 166 86.7
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 4.7e-72 276.9 154 92.2
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 4.7e-72 276.9 154 92.2
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 4.7e-72 276.9 154 92.2
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 4.7e-72 276.9 200 78.0
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 8.1e-72 276.2 200 75.0
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 1.1e-71 275.8 157 89.8
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 1.1e-71 275.8 178 83.1
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 1.8e-71 275.0 175 80.6
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 5.2e-71 273.5 171 81.9
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.5e-70 271.9 196 75.5
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 2.0e-70 271.6 195 76.9
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 3.4e-70 270.8 165 87.3
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 3.4e-70 270.8 173 82.7
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 4.4e-70 270.4 188 76.1
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 4.4e-70 270.4 192 76.6
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 4.4e-70 270.4 199 75.4
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 4.4e-70 270.4 165 85.5
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 7.5e-70 269.6 196 75.5
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 7.5e-70 269.6 196 75.5
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.3e-69 268.9 195 73.8
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 1.7e-69 268.5 173 80.3
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 1.7e-69 268.5 194 75.8
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.7e-69 268.5 187 75.9
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 2.2e-69 268.1 153 90.2
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 3.7e-69 267.3 178 80.3
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 3.7e-69 267.3 177 80.2
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 6.4e-69 266.5 158 87.3
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 6.4e-69 266.5 172 80.2
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 6.4e-69 266.5 158 88.0
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 6.4e-69 266.5 195 76.4
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 8.3e-69 266.2 632 41.8
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 8.3e-69 266.2 177 80.2
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 1.1e-68 265.8 189 78.3
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 1.4e-68 265.4 171 80.7
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 2.4e-68 264.6 159 85.5
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 3.2e-68 264.2 185 76.2
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 7.1e-68 263.1 172 80.2
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 7.1e-68 263.1 183 76.5
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 2.1e-67 261.5 196 73.5
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 2.7e-67 261.2 194 75.8
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 4.6e-67 260.4 183 76.0
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 4.6e-67 260.4 201 72.1
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 6.0e-67 260.0 179 78.2
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 6.0e-67 260.0 181 77.9
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 7.8e-67 259.6 196 71.4
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 7.8e-67 259.6 189 73.5
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 7.8e-67 259.6 201 71.1
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 1.0e-66 259.2 221 67.9
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 1.3e-66 258.8 159 83.6
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 1.7e-66 258.5 170 80.0
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 2.3e-66 258.1 195 73.8
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 3.0e-66 257.7 189 73.0
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 3.9e-66 257.3 178 77.5
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 3.9e-66 257.3 182 74.7
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 6.6e-66 256.5 181 76.2
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 8.6e-66 256.1 177 75.1
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 8.6e-66 256.1 536 51.7
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 8.6e-66 256.1 165 80.6
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 8.6e-66 256.1 152 86.2
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 1.9e-65 255.0 153 86.3
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 1.9e-65 255.0 172 77.3
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 1.9e-65 255.0 166 82.5
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 2.5e-65 254.6 167 80.8
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 5.6e-65 253.4 534 50.6
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 7.3e-65 253.1 153 85.6
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 9.6e-65 252.7 186 74.7
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 1.2e-64 252.3 171 78.9
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 2.1e-64 251.5 152 85.5
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 2.1e-64 251.5 185 74.6
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 6.2e-64 250.0 189 74.1
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 3.1e-63 247.7 154 81.8
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 3.1e-63 247.7 168 78.0
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 8.9e-63 246.1 173 75.7
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 8.9e-63 246.1 610 46.7
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 8.9e-63 246.1 592 39.4
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 1.5e-62 245.4 185 73.0
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 2.0e-62 245.0 174 75.9
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 2.6e-62 244.6 579 45.6
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 2.6e-62 244.6 212 66.0
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 4.4e-62 243.8 180 75.6
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 4.4e-62 243.8 623 49.4
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 6.4e-61 240.0 155 79.4
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 1.1e-60 239.2 156 80.1
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 1.1e-60 239.2 572 41.4
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 1.4e-60 238.8 189 71.4
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 1.6e-59 235.3 163 74.8
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 3.5e-59 234.2 571 48.3
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 1.0e-58 232.6 606 41.7
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 1.3e-58 232.3 135 85.2
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 1.3e-58 232.3 135 85.2
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 5.1e-58 230.3 134 85.1
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 5.1e-58 230.3 134 85.1
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 1.9e-57 228.4 133 85.0
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 3.3e-57 227.6 131 86.3
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 9.6e-57 226.1 166 72.3
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 9.6e-57 226.1 126 88.1
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 1.6e-56 225.3 134 83.6
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 1.6e-56 225.3 133 84.2
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 2.8e-56 224.6 129 86.0
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 6.2e-56 223.4 131 84.7
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 8.1e-56 223.0 171 71.9
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 8.1e-56 223.0 203 61.6
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 1.8e-55 221.9 129 85.3
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 6.9e-55 219.9 133 82.0
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 4.4e-54 217.2 131 82.4
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 5.8e-54 216.9 171 70.8
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 7.6e-54 216.5 596 41.8
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 7.6e-54 216.5 126 87.3
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 9.9e-54 216.1 129 82.9
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 6.4e-53 213.4 134 82.8
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 4.2e-52 210.7 142 78.9
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 7.1e-52 209.9 652 42.6
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 9.3e-52 209.5 188 64.4
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 9.3e-52 209.5 607 41.5
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 1.6e-51 208.8 142 78.2
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 7.8e-51 206.5 197 62.4
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 9.9e-46 189.5 164 64.0
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 7.9e-43 179.9 104 90.4
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 1.3e-42 179.1 119 79.0
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 4.3e-41 174.1 125 77.6
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 3.7e-40 171.0 157 62.4
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 6.2e-40 170.2 158 60.1
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 1.4e-39 169.1 131 70.2
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 1.2e-38 166.0 141 68.1
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 2.6e-38 164.9 106 78.3
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 3.4e-38 164.5 103 78.6
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 6.5e-37 160.2 174 55.7
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 3.0e-34 151.4 110 69.1
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 7.4e-33 146.7 160 52.5
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 5.3e-31 140.6 84 82.1
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 3.4e-30 137.9 84 81.0
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 3.8e-29 134.4 71 93.0
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 7.9e-27 126.7 164 44.5
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 1.8e-26 125.6 85 72.9
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 5.1e-26 124.0 85 71.8
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 1.9e-25 122.1 184 44.6
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 4.5e-22 110.9 68 80.9
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 7.7e-22 110.2 65 83.1
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 2.2e-21 108.6 67 80.6
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.6e-19 101.3 103 59.2
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 6.1e-19 100.5 68 76.5
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 1.4e-18 99.4 56 89.3
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 8.8e-18 96.7 48 95.8
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 4.3e-17 94.4 181 39.2
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 2.2e-16 92.0 56 83.9
SEGI_06876 Sequoiadendron giganteum HOM05D004217 ORTHO05D005561 5.5e-12 77.4 57 66.7
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 7.2e-12 77.0 56 67.9
SEGI_25252 Sequoiadendron giganteum HOM05D001284 ORTHO05D001177 9.4e-12 76.6 64 59.4
SEGI_22609 Sequoiadendron giganteum HOM05D007046 ORTHO05D008788 2.3e-10 72.0 53 66.0
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 1.7e-08 65.9 153 36.6
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 3.1e-07 61.6 67 49.3
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 9.1e-07 60.1 78 47.4
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 3.5e-06 58.2 157 32.5


User provided reference genes

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