Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 5.1e-211 737.6 415 100.0
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.7e-95 353.2 302 60.6
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 6.9e-75 285.4 340 48.2
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 3.4e-74 283.1 293 52.6
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 1.9e-72 277.3 305 52.1
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 7.2e-72 275.4 290 49.7
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 2.1e-71 273.9 296 50.7
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 7.9e-71 271.9 289 50.9
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 1.3e-70 271.2 297 50.5
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 2.3e-70 270.4 310 49.7
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 3.0e-70 270.0 319 47.3
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 3.9e-70 269.6 294 49.0
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 5.1e-70 269.2 292 50.3
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 8.7e-70 268.5 291 49.5
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 8.7e-70 268.5 294 51.7
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 1.1e-69 268.1 308 49.4
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 1.1e-69 268.1 293 49.5
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 1.5e-69 267.7 306 49.7
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 1.5e-69 267.7 295 50.5
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 3.3e-69 266.5 295 49.5
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 3.3e-69 266.5 295 50.2
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 3.3e-69 266.5 287 49.1
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 4.3e-69 266.2 293 49.1
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 4.3e-69 266.2 293 49.1
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 5.7e-69 265.8 330 47.0
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 7.4e-69 265.4 322 46.9
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 7.4e-69 265.4 325 47.7
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 1.3e-68 264.6 295 49.8
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 1.3e-68 264.6 291 47.8
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 1.6e-68 264.2 311 47.6
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 2.2e-68 263.8 295 48.8
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 2.2e-68 263.8 298 49.7
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 2.2e-68 263.8 312 48.7
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.8e-68 263.5 292 49.3
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 2.8e-68 263.5 324 48.5
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 2.8e-68 263.5 299 48.2
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 3.7e-68 263.1 293 49.5
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 6.3e-68 262.3 294 51.0
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 2.4e-67 260.4 293 48.5
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 3.1e-67 260.0 299 50.2
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 4.1e-67 259.6 311 49.2
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 4.1e-67 259.6 318 47.5
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 9.1e-67 258.5 289 50.9
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 9.1e-67 258.5 319 47.6
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 1.5e-66 257.7 292 50.3
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.0e-66 257.3 292 48.6
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 2.0e-66 257.3 290 49.0
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 2.6e-66 256.9 301 48.2
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 2.6e-66 256.9 295 50.5
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 2.6e-66 256.9 307 47.6
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 3.4e-66 256.5 311 45.7
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 4.5e-66 256.1 288 49.3
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 4.5e-66 256.1 334 44.0
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 7.7e-66 255.4 321 45.2
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 7.7e-66 255.4 292 50.7
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 1.0e-65 255.0 306 46.7
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 1.3e-65 254.6 329 45.6
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 2.9e-65 253.4 304 47.7
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 2.9e-65 253.4 297 47.8
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 2.9e-65 253.4 291 49.5
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 3.8e-65 253.1 311 46.3
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 5.0e-65 252.7 321 47.4
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 1.1e-64 251.5 294 48.0
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 1.4e-64 251.1 307 46.6
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 4.2e-64 249.6 313 47.0
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 4.2e-64 249.6 319 43.3
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 5.5e-64 249.2 305 46.6
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 5.5e-64 249.2 313 47.0
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 5.5e-64 249.2 323 45.2
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 5.5e-64 249.2 323 45.2
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 5.5e-64 249.2 302 47.0
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 9.4e-64 248.4 313 46.3
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 9.4e-64 248.4 299 49.2
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.2e-63 248.1 310 48.4
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.2e-63 248.1 302 49.7
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 1.2e-63 248.1 290 48.6
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 1.6e-63 247.7 313 47.0
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 1.6e-63 247.7 313 47.0
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 1.6e-63 247.7 293 48.8
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 1.6e-63 247.7 299 49.5
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.6e-63 247.7 299 49.5
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 1.6e-63 247.7 291 48.8
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 2.1e-63 247.3 295 48.8
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 2.7e-63 246.9 297 46.5
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.7e-63 246.9 299 49.2
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 3.6e-63 246.5 313 46.6
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 4.6e-63 246.1 297 47.5
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 6.1e-63 245.7 297 46.1
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 1.0e-62 245.0 286 49.7
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.4e-62 244.6 323 44.9
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 1.8e-62 244.2 306 46.4
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 2.3e-62 243.8 299 46.8
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 3.0e-62 243.4 294 49.7
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 3.9e-62 243.0 291 48.8
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 5.1e-62 242.7 293 47.4
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 6.7e-62 242.3 293 48.8
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 7.4e-61 238.8 345 43.5
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 9.7e-61 238.4 322 44.7
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 9.7e-61 238.4 294 48.0
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 2.2e-60 237.3 303 45.2
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 2.8e-60 236.9 303 45.5
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 3.7e-60 236.5 297 46.8
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 4.8e-60 236.1 312 45.2
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 6.3e-60 235.7 312 45.2
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 1.4e-59 234.6 290 47.6
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.4e-59 234.6 316 45.3
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.4e-59 234.6 292 45.9
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 1.8e-59 234.2 302 48.3
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 1.8e-59 234.2 304 45.1
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 2.4e-59 233.8 308 46.1
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 3.1e-59 233.4 316 43.4
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 6.9e-59 232.3 289 47.4
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.2e-58 231.5 304 44.7
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 7.7e-58 228.8 321 43.0
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.3e-57 228.0 289 48.4
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 2.9e-57 226.9 289 46.7
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 3.8e-57 226.5 293 45.1
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 5.0e-57 226.1 304 43.4
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 1.4e-56 224.6 313 41.5
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.6e-53 213.8 216 49.1
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 4.4e-53 213.0 216 48.6
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 9.7e-53 211.8 261 47.5
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 9.7e-53 211.8 216 48.1
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 2.2e-52 210.7 415 34.7
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 1.0e-49 201.8 231 50.2
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 6.1e-47 192.6 252 44.0
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 2.4e-43 180.6 271 43.5
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 4.5e-42 176.4 147 53.7
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 2.3e-38 164.1 176 50.0
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 1.3e-36 158.3 159 50.9
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 2.7e-34 150.6 147 53.1
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.1e-31 141.0 146 52.7
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 2.2e-28 131.0 159 45.9
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 2.2e-28 131.0 145 51.7
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 3.8e-25 120.2 146 45.9
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 1.7e-17 94.7 151 41.1
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 5.6e-16 89.7 79 53.2
SEGI_39188 Sequoiadendron giganteum HOM05D001915 ORTHO05D000007 5.6e-16 89.7 65 75.4
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 1.1e-11 75.5 124 41.1
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 5.0e-09 66.6 163 31.3
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 8.6e-09 65.9 217 29.0
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 5.6e-08 63.2 143 37.8
Pp3c24_9340 Physcomitrium patens HOM05D003180 ORTHO05D003664 1.4e-06 58.5 137 35.0


User provided reference genes

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