Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_20574 Sequoiadendron giganteum HOM05D005757 ORTHO05D007090 2.1e-54 215.3 101 100.0
Os12g0179800 Oryza sativa ssp. japonica HOM05D005757 ORTHO05D007090 1.1e-18 96.7 78 55.1
Zm00001eb408300 Zea mays HOM05D005757 ORTHO05D007090 7.2e-18 94.0 58 65.5
QL10p041201 Quercus lobata HOM05D005757 ORTHO05D007090 1.6e-17 92.8 60 65.0
Mapoly0093s0042 Marchantia polymorpha HOM05D005757 ORTHO05D007090 3.6e-17 91.7 56 67.9
RcHm_v2.0_Chr2g0122631 Rosa chinensis HOM05D005757 ORTHO05D007090 6.1e-17 90.9 56 67.9
Cfa002199 Carpinus fangiana HOM05D005757 ORTHO05D007090 7.9e-17 90.5 68 57.4
Nn1g08970 Nelumbo nucifera HOM05D005757 ORTHO05D007090 1.0e-16 90.1 56 67.9
Gohir.A05G381400 Gossypium hirsutum HOM05D005757 ORTHO05D007090 1.4e-16 89.7 56 66.1
Gohir.D04G033900 Gossypium hirsutum HOM05D005757 ORTHO05D007090 1.4e-16 89.7 56 66.1
Gorai.012G038200 Gossypium raimondii HOM05D005757 ORTHO05D007090 1.4e-16 89.7 56 66.1
TAR625G0433 Trochodendron aralioides HOM05D005757 ORTHO05D007090 1.4e-16 89.7 56 64.3
COL.COLO4_35820 Corchorus olitorius HOM05D005757 ORTHO05D007090 1.8e-16 89.4 56 64.3
Eucgr.I00121 Eucalyptus grandis HOM05D005757 ORTHO05D007090 1.8e-16 89.4 56 64.3
CsaV3_2G019560 Cucumis sativus L. HOM05D005757 ORTHO05D007090 2.3e-16 89.0 56 66.1
QL10p041184 Quercus lobata HOM05D005757 ORTHO05D007090 2.3e-16 89.0 56 66.1
QL10p041477 Quercus lobata HOM05D005757 ORTHO05D007090 2.3e-16 89.0 56 66.1
Ciclev10001356m.g Citrus clementina HOM05D005757 ORTHO05D007090 3.0e-16 88.6 56 66.1
Lj1g0019812 Lotus japonicus HOM05D005757 ORTHO05D007090 3.0e-16 88.6 69 58.0
Medtr3g096710 Medicago truncatula HOM05D005757 ORTHO05D007090 3.0e-16 88.6 78 51.3
Atru.chr4.999 Acer truncatum HOM05D005757 ORTHO05D007090 3.9e-16 88.2 56 64.3
BcaB05g21563 Brassica carinata HOM05D005757 ORTHO05D007090 3.9e-16 88.2 56 66.1
BcaC03g13245 Brassica carinata HOM05D005757 ORTHO05D007090 3.9e-16 88.2 66 56.1
C02p03770 Brassica napus HOM05D005757 ORTHO05D007090 3.9e-16 88.2 56 64.3
CANSAT01G1027 Cannabis sativa HOM05D005757 ORTHO05D007090 3.9e-16 88.2 56 66.1
Lj1g0002676 Lotus japonicus HOM05D000058 ORTHO05D000077 3.9e-16 88.2 56 66.1
arahy.Tifrunner.gnm1.ann1.X6R2FG Arachis hypogaea HOM05D005757 ORTHO05D007090 5.1e-16 87.8 69 53.6
CiPaw.04G079300 Carya illinoinensis HOM05D005757 ORTHO05D007090 5.1e-16 87.8 56 66.1
Lalb_Chr11g0068621 Lupinus albus HOM05D005757 ORTHO05D007090 5.1e-16 87.8 56 64.3
Thecc.01G137800 Theobroma cacao HOM05D005757 ORTHO05D007090 5.1e-16 87.8 56 64.3
AL6G19620 Arabidopsis lyrata HOM05D005757 ORTHO05D007090 6.7e-16 87.4 56 64.3
AT5G09230 Arabidopsis thaliana HOM05D005757 ORTHO05D007090 6.7e-16 87.4 56 64.3
arahy.Tifrunner.gnm1.ann1.5W1UEZ Arachis hypogaea HOM05D005757 ORTHO05D007090 6.7e-16 87.4 69 53.6
CARHR204190 Cardamine hirsuta HOM05D005757 ORTHO05D007090 6.7e-16 87.4 56 64.3
Cpa.g.sc37.11 Carica papaya HOM05D005757 ORTHO05D007090 6.7e-16 87.4 56 62.5
Thhalv10013744m.g Eutrema salsugineum HOM05D005757 ORTHO05D007090 6.7e-16 87.4 56 64.3
FAN23G0434 Fragaria x ananassa HOM05D005757 ORTHO05D007090 6.7e-16 87.4 56 64.3
FAN26G2810 Fragaria x ananassa HOM05D005757 ORTHO05D007090 6.7e-16 87.4 56 64.3
PGR119G2343 Punica granatum HOM05D005757 ORTHO05D007090 6.7e-16 87.4 56 64.3
BolC2t06338H Brassica oleracea HOM05D005757 ORTHO05D007090 8.8e-16 87.0 56 62.5
Ca_28148_v3 Cicer arietinum L. HOM05D005757 ORTHO05D007090 8.8e-16 87.0 56 64.3
Ca_28522_v3 Cicer arietinum L. HOM05D005757 ORTHO05D007090 8.8e-16 87.0 56 64.3
FvH4_1g24990 Fragaria vesca HOM05D005757 ORTHO05D007090 8.8e-16 87.0 56 64.3
Psat5g060320 Pisum sativum HOM05D005757 ORTHO05D007090 8.8e-16 87.0 56 64.3
VMungo1309G1065 Vigna mungo HOM05D005757 ORTHO05D007090 8.8e-16 87.0 57 63.2
BraA02t04972Z Brassica rapa HOM05D005757 ORTHO05D007090 1.1e-15 86.7 56 62.5
MELO3C023217.2 Cucumis melo HOM05D005757 ORTHO05D007090 1.1e-15 86.7 56 64.3
MBI03_g28480_MAGBIO Magnolia biondii HOM05D005757 ORTHO05D007090 1.1e-15 86.7 56 64.3
Phvul.009G154300 Phaseolus vulgaris HOM05D005757 ORTHO05D007090 1.1e-15 86.7 56 64.3
Prupe.4G275900 Prunus persica HOM05D005757 ORTHO05D007090 1.1e-15 86.7 56 64.3
Sp6g34070 Schrenkiella parvula HOM05D005757 ORTHO05D007090 1.1e-15 86.7 56 62.5
Carub.0006s0779 Capsella rubella HOM05D005757 ORTHO05D007090 1.5e-15 86.3 56 62.5
Glyma.06G156000 Glycine max HOM05D005757 ORTHO05D007090 1.5e-15 86.3 56 64.3
THA.LOC104818419 Tarenaya hassleriana HOM05D005757 ORTHO05D007090 1.5e-15 86.3 56 64.3
TWI75G1840 Tripterygium wilfordii HOM05D005757 ORTHO05D007090 1.5e-15 86.3 56 64.3
ATR0584G010 Amborella trichopoda HOM05D005757 ORTHO05D007090 2.0e-15 85.9 57 63.2
MD00G1091800 Malus domestica HOM05D005757 ORTHO05D007090 2.0e-15 85.9 56 64.3
GSVIVG01022342001 Vitis vinifera HOM05D005757 ORTHO05D007090 2.0e-15 85.9 56 64.3
Aa31LG3G17760 Aethionema arabicum HOM05D005757 ORTHO05D007090 2.6e-15 85.5 56 62.5
Glyma.04G210000 Glycine max HOM05D005757 ORTHO05D007090 2.6e-15 85.5 56 62.5
Sed0027545 Sechium edule HOM05D005757 ORTHO05D007090 2.6e-15 85.5 56 66.1
SEGI_00290 Sequoiadendron giganteum HOM05D020779 ORTHO05D007090 3.3e-15 85.1 39 100.0
SEGI_00724 Sequoiadendron giganteum HOM05D020779 ORTHO05D007090 3.3e-15 85.1 39 100.0
CDE08G1654 Ceratophyllum demersum HOM05D005757 ORTHO05D007090 4.4e-15 84.7 56 62.5
FAN28G1123 Fragaria x ananassa HOM05D005757 ORTHO05D007090 4.4e-15 84.7 56 66.1
Manes.12G147700 Manihot esculenta HOM05D005757 ORTHO05D007090 4.4e-15 84.7 56 62.5
SEGI_00323 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 4.4e-15 84.7 47 85.1
TPR.G33548 Trifolium pratense HOM05D005757 ORTHO05D007090 5.7e-15 84.3 56 60.7
Sabra05G0055900 Salix brachista HOM05D005757 ORTHO05D007090 7.4e-15 84.0 56 60.7
HPP92_011392 Vanilla planifolia HOM05D005757 ORTHO05D007090 7.4e-15 84.0 79 50.6
SEGI_34244 Sequoiadendron giganteum HOM05D000003 ORTHO05D000006 9.7e-15 83.6 39 97.4
Lsat_1_v5_gn_7_106341 Lactuca sativa HOM05D005757 ORTHO05D007090 1.3e-14 83.2 56 64.3
Manes.12G159200 Manihot esculenta HOM05D005757 ORTHO05D007090 1.3e-14 83.2 56 60.7
Potri.005G068400 Populus trichocarpa HOM05D005757 ORTHO05D007090 1.3e-14 83.2 56 60.7
CSS0011153 Camellia sinensis var. sinensis HOM05D005757 ORTHO05D007090 1.7e-14 82.8 56 64.3
HanXRQChr01g0019111 Helianthus annuus HOM05D005757 ORTHO05D007090 1.7e-14 82.8 56 64.3
Migut.H00828 Erythranthe guttata HOM05D005757 ORTHO05D007090 2.2e-14 82.4 56 64.3
PSO675G6061 Papaver somniferum HOM05D005757 ORTHO05D007090 2.8e-14 82.0 58 58.6
SEGI_02138 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 2.8e-14 82.0 39 94.9
vmacro18686 Vaccinium macrocarpon HOM05D005757 ORTHO05D007090 2.8e-14 82.0 57 59.6
DCAR_009593 Daucus carota HOM05D005757 ORTHO05D007090 3.7e-14 81.6 56 62.5
Dinv16327 Davidia involucrata HOM05D005757 ORTHO05D007090 3.7e-14 81.6 56 64.3
ECA248G3451 Erigeron canadensis HOM05D005757 ORTHO05D007090 3.7e-14 81.6 56 62.5
Lj7C583G3 Lonicera japonica HOM05D005757 ORTHO05D007090 4.8e-14 81.3 56 62.5
Nitab4.5_0004105g0030 Nicotiana tabacum HOM05D005757 ORTHO05D007090 6.3e-14 80.9 77 51.9
Peaxi162Scf00842g00217 Petunia axillaris HOM05D005757 ORTHO05D007090 6.3e-14 80.9 77 50.6
QL05p089323 Quercus lobata HOM05D005757 ORTHO05D007090 6.3e-14 80.9 56 62.5
PGSC0003DMG400032556 Solanum tuberosum HOM05D005757 ORTHO05D007090 6.3e-14 80.9 77 51.9
PSO541G2210 Papaver somniferum HOM05D005757 ORTHO05D007090 8.2e-14 80.5 58 56.9
SEGI_09404 Sequoiadendron giganteum HOM05D001113 ORTHO05D000968 8.2e-14 80.5 39 92.3
unitig_52.g17615 Utricularia gibba HOM05D005757 ORTHO05D007090 8.2e-14 80.5 56 62.5
SGA_v2.0_scaffold20G08952 Striga asiatica HOM05D005757 ORTHO05D007090 1.1e-13 80.1 56 60.7
Actinidia16522 Actinidia chinensis HOM05D005757 ORTHO05D007090 1.4e-13 79.7 56 60.7
CAN.G186.1 Capsicum annuum HOM05D005757 ORTHO05D007090 1.8e-13 79.3 77 50.6
Nitab4.5_0010993g0010 Nicotiana tabacum HOM05D005757 ORTHO05D007090 1.8e-13 79.3 77 50.6
Aqoxy6G00314 Aquilegia oxysepala HOM05D005757 ORTHO05D007090 2.4e-13 79.0 58 58.6
MSTRG.23485 Avicennia marina HOM05D005757 ORTHO05D007090 2.4e-13 79.0 56 58.9
Cc07_g19340 Coffea canephora HOM05D005757 ORTHO05D007090 2.4e-13 79.0 77 45.5
Oeu037858.1 Olea europaea HOM05D005757 ORTHO05D007090 2.4e-13 79.0 56 60.7
Rhsim08G0000300 Rhododendron simsii HOM05D005757 ORTHO05D007090 2.4e-13 79.0 56 57.1
EL10Ac4g09631 Beta vulgaris HOM05D005757 ORTHO05D007090 4.1e-13 78.2 56 58.9
AUR62000523 Chenopodium quinoa HOM05D005757 ORTHO05D007090 5.3e-13 77.8 56 57.1
AUR62006868 Chenopodium quinoa HOM05D005757 ORTHO05D007090 5.3e-13 77.8 56 57.1
Solyc04g009430.3 Solanum lycopersicum HOM05D005757 ORTHO05D007090 5.3e-13 77.8 77 49.4
Sopen04g004560 Solanum pennellii HOM05D005757 ORTHO05D007090 5.3e-13 77.8 77 49.4
Sc16g0009550 Simmondsia chinensis HOM05D005757 ORTHO05D007090 7.0e-13 77.4 56 55.4
SMO115G0270 Selaginella moellendorffii HOM05D005757 ORTHO05D007090 7.7e-12 73.9 58 62.1
Hund07233 Selenicereus undatus HOM05D005757 ORTHO05D007090 1.3e-11 73.2 56 55.4
Pp3c16_14390 Physcomitrium patens HOM05D005757 ORTHO05D007090 3.8e-11 71.6 57 52.6
ECA248G1240 Erigeron canadensis HOM05D005757 ORTHO05D007090 5.5e-10 67.8 56 51.8
MELO3C031906.2 Cucumis melo HOM05D005757 ORTHO05D007090 1.2e-09 66.6 35 71.4
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 1.0e-08 63.5 33 90.9
MELO3C027223.2 Cucumis melo HOM05D005757 ORTHO05D007090 3.0e-08 62.0 35 65.7
MELO3C029498.2 Cucumis melo HOM05D005757 ORTHO05D007090 5.2e-08 61.2 35 62.9
MELO3C029389.2 Cucumis melo HOM05D005757 ORTHO05D007090 6.7e-08 60.8 35 65.7
MELO3C035391.2 Cucumis melo HOM05D005757 ORTHO05D007090 1.5e-07 59.7 33 66.7
SEGI_08656 Sequoiadendron giganteum HOM05D003938 ORTHO05D004759 2.6e-07 58.9 39 74.4
MELO3C033631.2 Cucumis melo HOM05D005757 ORTHO05D007090 5.7e-07 57.8 33 66.7
MELO3C028228.2 Cucumis melo HOM05D005757 ORTHO05D007090 9.7e-07 57.0 33 63.6
SEGI_27514 Sequoiadendron giganteum HOM05D000104 ORTHO05D003467 1.7e-06 56.2 58 51.7
BcaB05g22515 Brassica carinata HOM05D005757 ORTHO05D007090 2.8e-06 55.5 61 44.3
SEGI_03573 Sequoiadendron giganteum HOM05D000399 ORTHO05D000304 2.8e-06 55.5 39 69.2


User provided reference genes

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