Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 1.1e-247 859.4 404 100.0
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 3.1e-165 585.5 388 69.6
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.7e-164 582.4 385 69.1
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 7.8e-164 580.9 369 72.4
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 1.0e-163 580.5 382 70.4
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 2.3e-163 579.3 341 74.8
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 2.9e-163 578.9 370 69.2
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 5.0e-163 578.2 370 70.3
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 6.6e-163 577.8 385 67.0
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 8.6e-163 577.4 377 70.0
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 1.1e-162 577.0 388 68.6
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 1.1e-162 577.0 340 76.2
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.9e-162 576.2 370 68.6
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 4.3e-162 575.1 337 75.1
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 4.3e-162 575.1 377 70.6
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 4.3e-162 575.1 388 68.6
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 4.3e-162 575.1 390 68.2
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 5.6e-162 574.7 386 67.9
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 7.3e-162 574.3 370 70.3
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 7.3e-162 574.3 375 69.3
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 9.5e-162 573.9 337 74.8
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 9.5e-162 573.9 334 75.4
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 9.5e-162 573.9 385 67.8
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 1.2e-161 573.5 371 70.1
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 2.8e-161 572.4 358 70.9
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 2.8e-161 572.4 381 68.8
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 2.8e-161 572.4 386 67.4
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 3.6e-161 572.0 407 64.4
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 3.6e-161 572.0 334 75.1
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 6.1e-161 571.2 372 68.3
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 6.1e-161 571.2 378 67.7
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 6.1e-161 571.2 377 69.0
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 6.1e-161 571.2 385 68.1
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 8.0e-161 570.9 367 69.2
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 8.0e-161 570.9 370 69.5
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 8.0e-161 570.9 336 74.7
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 8.0e-161 570.9 385 68.1
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 1.0e-160 570.5 400 65.8
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 1.0e-160 570.5 334 75.1
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.0e-160 570.5 381 67.7
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 1.0e-160 570.5 373 68.1
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 1.4e-160 570.1 333 75.4
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 1.4e-160 570.1 382 68.8
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 1.4e-160 570.1 384 68.0
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 1.8e-160 569.7 334 75.1
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 1.8e-160 569.7 336 75.0
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 2.3e-160 569.3 381 69.0
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 2.3e-160 569.3 385 68.1
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 3.0e-160 568.9 371 68.2
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 5.2e-160 568.2 379 68.3
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 5.2e-160 568.2 342 73.7
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 6.8e-160 567.8 336 74.1
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 8.9e-160 567.4 377 68.2
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 8.9e-160 567.4 347 72.9
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 1.2e-159 567.0 336 74.4
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 1.2e-159 567.0 336 74.7
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 1.2e-159 567.0 373 68.9
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 1.2e-159 567.0 336 74.1
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 1.2e-159 567.0 379 67.3
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 1.2e-159 567.0 378 67.7
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 1.5e-159 566.6 379 67.3
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.5e-159 566.6 375 67.5
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.5e-159 566.6 380 68.2
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.5e-159 566.6 381 67.7
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 2.0e-159 566.2 370 70.3
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 2.6e-159 565.8 336 75.6
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 4.4e-159 565.1 376 68.6
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 5.7e-159 564.7 378 67.7
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 5.7e-159 564.7 380 67.9
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 5.7e-159 564.7 375 67.2
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 7.5e-159 564.3 389 66.3
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 7.5e-159 564.3 336 73.5
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 7.5e-159 564.3 378 66.9
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 9.8e-159 563.9 384 66.1
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 9.8e-159 563.9 372 68.5
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 1.3e-158 563.5 378 66.9
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 1.3e-158 563.5 377 68.7
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 1.3e-158 563.5 380 66.8
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 1.7e-158 563.1 378 67.2
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.9e-158 562.4 394 66.8
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.9e-158 562.4 334 74.6
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 3.7e-158 562.0 378 68.3
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 3.7e-158 562.0 381 67.7
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 4.9e-158 561.6 370 67.6
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 6.4e-158 561.2 380 66.3
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 8.3e-158 560.8 380 66.6
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 8.3e-158 560.8 378 66.9
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 1.1e-157 560.5 370 67.8
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 2.4e-157 559.3 379 68.1
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 2.4e-157 559.3 379 68.1
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 2.4e-157 559.3 377 66.8
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 2.4e-157 559.3 380 67.4
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.4e-157 559.3 381 67.5
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 5.4e-157 558.1 386 65.8
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 7.0e-157 557.8 379 67.5
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 1.2e-156 557.0 370 67.8
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 2.0e-156 556.2 379 67.8
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 3.5e-156 555.4 379 66.2
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 5.9e-156 554.7 379 67.5
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 7.8e-156 554.3 353 70.0
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 1.7e-155 553.1 369 67.2
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 6.6e-155 551.2 331 73.4
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 6.6e-155 551.2 339 73.2
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 6.6e-155 551.2 378 67.2
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 2.5e-154 549.3 327 73.1
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 3.6e-153 545.4 322 75.5
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 4.7e-153 545.0 412 62.1
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 1.4e-152 543.5 334 73.7
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 6.8e-152 541.2 371 65.8
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 1.5e-151 540.0 322 75.5
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 1.5e-151 540.0 365 67.1
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 7.5e-151 537.7 327 74.3
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 1.3e-150 537.0 373 65.7
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 4.9e-150 535.0 322 73.0
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 2.0e-148 529.6 444 57.4
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 2.3e-147 526.2 334 72.5
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 1.8e-144 516.5 309 74.4
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 4.0e-144 515.4 322 71.1
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 3.4e-143 512.3 338 69.2
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 9.9e-143 510.8 332 67.5
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 2.2e-142 509.6 369 64.8
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 2.3e-139 499.6 337 68.0
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 5.1e-139 498.4 379 61.2
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.5e-138 496.9 289 74.7
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 2.8e-137 492.7 289 76.1
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 3.6e-137 492.3 289 75.4
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 1.5e-127 460.3 286 70.3
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 6.4e-126 454.9 387 53.5
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 9.6e-122 441.0 266 74.1
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 1.5e-119 433.7 285 67.4
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 1.7e-118 430.3 285 67.7
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 9.6e-114 414.5 344 60.2
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 2.1e-105 386.7 336 50.6
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 5.5e-101 372.1 251 67.3
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.5e-98 364.0 242 68.6
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 9.7e-98 361.3 203 78.3
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 5.1e-91 339.0 316 50.6
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 5.9e-87 325.5 371 43.1
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 8.8e-83 311.6 236 62.3
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 1.8e-67 260.8 136 89.7
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 1.1e-56 224.9 179 59.8
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 4.2e-53 213.0 136 69.1
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 4.4e-50 203.0 139 66.9
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 4.0e-43 179.9 118 67.8
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 9.8e-42 175.3 119 65.5
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 2.5e-37 160.6 127 59.8
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.7e-30 137.9 85 71.8
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 5.1e-30 136.3 85 70.6
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 1.3e-25 121.7 77 70.1
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 3.6e-20 103.6 70 65.7
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 4.9e-09 66.6 51 62.7


User provided reference genes

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