Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_20413 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 0.0e+00 3956.0 2028 100.0
SEGI_14546 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 0.0e+00 1837.0 2102 52.0
SEGI_05804 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 0.0e+00 1746.9 2016 52.3
SEGI_03751 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 0.0e+00 1651.7 2007 49.3
SEGI_28539 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 0.0e+00 1642.5 2089 48.6
SEGI_06130 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 0.0e+00 1468.0 1624 52.2
SEGI_11018 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 0.0e+00 1223.0 2079 40.3
SEGI_41445 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 9.0e-277 958.4 1853 37.6
SEGI_23622 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 2.0e-268 930.6 1993 35.8
SEGI_16407 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 1.9e-266 924.1 818 62.7
SEGI_39701 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 1.9e-263 914.1 1964 35.2
SEGI_29838 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 3.8e-251 873.2 2026 35.4
SEGI_28572 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 3.9e-240 836.6 2106 32.8
SEGI_28309 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 1.1e-229 802.0 2137 31.7
SEGI_16474 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 1.8e-208 731.5 1146 43.7
SEGI_00368 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 5.2e-208 729.9 1409 37.0
SEGI_02565 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 5.2e-208 729.9 1409 37.0
SEGI_08952 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 3.7e-206 723.8 2622 27.3
SEGI_06464 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 5.8e-167 593.6 831 45.4
SEGI_33726 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 6.5e-142 510.4 1996 27.7
SEGI_06175 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 1.6e-140 505.8 934 37.0
SEGI_36560 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 2.1e-140 505.4 934 36.9
SEGI_19179 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 3.3e-138 498.0 1411 30.3
SEGI_13951 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 3.4e-135 488.0 933 36.3
SEGI_11845 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 2.7e-132 478.4 1362 31.1
SEGI_28978 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 7.9e-132 476.9 605 47.3
SEGI_41089 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 8.7e-131 473.4 1039 33.7
SEGI_12606 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 2.5e-130 471.9 1266 32.5
SEGI_19044 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 6.3e-129 467.2 1098 35.2
SEGI_01163 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 8.2e-121 440.3 475 51.4
SEGI_28151 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 1.1e-120 439.9 733 39.2
SEGI_21161 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 5.5e-117 427.6 993 35.3
SEGI_03611 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 2.2e-113 415.6 1163 30.4
SEGI_38416 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 7.0e-104 384.0 1139 29.9
SEGI_40392 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 7.7e-103 380.6 514 49.2
SEGI_14650 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 6.1e-100 370.9 949 32.0
SEGI_01049 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 8.3e-97 360.5 1334 28.8
SEGI_27891 Sequoiadendron giganteum HOM05D008033 ORTHO05D000004 4.5e-95 354.8 867 32.9
SEGI_17338 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 1.1e-93 350.1 714 36.3
SEGI_05380 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 2.5e-93 349.0 338 57.1
SEGI_04805 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 9.5e-93 347.1 628 40.9
SEGI_27684 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 9.5e-93 347.1 628 40.9
SEGI_27704 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 4.5e-87 328.2 821 32.0
SEGI_34972 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 7.8e-87 327.4 544 39.5
SEGI_36134 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 1.2e-82 313.5 976 30.4
SEGI_30865 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 3.4e-82 312.0 445 43.8
SEGI_41543 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 1.2e-76 293.5 614 34.9
SEGI_16158 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 7.1e-56 224.6 922 27.8
SEGI_25429 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 3.8e-49 202.2 775 24.0
SEGI_26513 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 3.0e-46 192.6 165 66.1
SEGI_25935 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 2.9e-33 149.4 398 32.4
SEGI_38881 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 4.2e-32 145.6 281 35.9
SEGI_28952 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 6.0e-31 141.7 118 55.1
SEGI_01193 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 5.1e-30 138.7 157 56.7
SEGI_37874 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 8.7e-30 137.9 109 65.1
SEGI_04171 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 1.3e-28 134.0 756 23.9
SEGI_14985 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 1.3e-22 114.0 131 55.0
SEGI_18707 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 3.9e-22 112.5 155 41.9
SEGI_41503 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 9.0e-19 101.3 121 49.6
SEGI_04657 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 1.2e-15 90.9 150 36.0
SEGI_23257 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 7.9e-15 88.2 271 36.9
SEGI_37096 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 1.8e-14 87.0 103 49.5
SEGI_00569 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 1.5e-13 84.0 114 47.4
TPR.G1404 Trifolium pratense HOM05D003550 ORTHO05D004336 2.4e-11 76.6 436 21.8
FAN06G0346 Fragaria x ananassa HOM05D003550 ORTHO05D004336 9.1e-11 74.7 342 24.3
Mapoly0035s0005 Marchantia polymorpha HOM05D011467 ORTHO05D014661 1.5e-10 73.9 339 25.1
SEGI_00695 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 2.0e-10 73.6 230 25.2
SEGI_23709 Sequoiadendron giganteum HOM05D012352 ORTHO05D009960 2.6e-10 73.2 119 35.3
A03p06030 Brassica napus HOM05D003550 ORTHO05D004336 3.4e-10 72.8 292 24.7
BraA03t09941Z Brassica rapa HOM05D003550 ORTHO05D004336 3.4e-10 72.8 292 24.7
FvH4_7g03470 Fragaria vesca HOM05D003550 ORTHO05D004336 1.0e-09 71.2 356 23.9
PSO384G0047 Papaver somniferum HOM05D003550 ORTHO05D004336 1.0e-09 71.2 415 23.6
SEGI_31284 Sequoiadendron giganteum HOM05D008033 ORTHO05D009960 1.0e-09 71.2 75 53.3
Phvul.005G025000 Phaseolus vulgaris HOM05D003550 ORTHO05D004336 1.3e-09 70.9 288 24.7
Psat5g221640 Pisum sativum HOM05D003550 ORTHO05D004336 1.3e-09 70.9 429 21.7
Nitab4.5_0005808g0030 Nicotiana tabacum HOM05D003550 ORTHO05D004336 1.7e-09 70.5 270 24.1
C03p07080 Brassica napus HOM05D003550 ORTHO05D004336 2.2e-09 70.1 288 25.0
BolC3t13205H Brassica oleracea HOM05D003550 ORTHO05D004336 2.2e-09 70.1 288 25.0
CAN.G1045.18 Capsicum annuum HOM05D003550 ORTHO05D004336 2.2e-09 70.1 299 22.1
Eucgr.G03219 Eucalyptus grandis HOM05D003550 ORTHO05D004336 2.9e-09 69.7 294 25.5
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 5.0e-09 68.9 134 30.6
Glyma.04G134700 Glycine max HOM05D003550 ORTHO05D004336 5.0e-09 68.9 280 25.7
Ciclev10000023m.g Citrus clementina HOM05D003550 ORTHO05D004336 6.5e-09 68.6 307 27.4
Carub.0006s1169 Capsella rubella HOM05D003550 ORTHO05D004336 8.5e-09 68.2 373 25.5
TAR369G1080 Trochodendron aralioides HOM05D003550 ORTHO05D004336 8.5e-09 68.2 298 22.5
PSO339G1124 Papaver somniferum HOM05D003550 ORTHO05D004336 1.1e-08 67.8 282 26.6
Actinidia10150 Actinidia chinensis HOM05D003550 ORTHO05D004336 1.4e-08 67.4 288 23.6
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 1.4e-08 67.4 134 29.9
Gohir.A10G186900 Gossypium hirsutum HOM05D003550 ORTHO05D004336 1.4e-08 67.4 199 31.2
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 1.9e-08 67.0 134 29.9
Gorai.011G216900 Gossypium raimondii HOM05D003550 ORTHO05D004336 2.5e-08 66.6 229 27.9
Sp6g30490 Schrenkiella parvula HOM05D003550 ORTHO05D004336 2.5e-08 66.6 291 24.4
AUR62032634 Chenopodium quinoa HOM05D003550 ORTHO05D004336 3.2e-08 66.2 286 23.8
BcaB01g05364 Brassica carinata HOM05D001362 ORTHO05D001310 4.2e-08 65.9 97 36.1
DCAR_001913 Daucus carota HOM05D003550 ORTHO05D004336 5.5e-08 65.5 294 25.9
Gohir.D10G193900 Gossypium hirsutum HOM05D003550 ORTHO05D004336 5.5e-08 65.5 229 27.5
Lsat_1_v5_gn_7_31581 Lactuca sativa HOM05D003550 ORTHO05D004336 5.5e-08 65.5 271 26.2
Lalb_Chr01g0015821 Lupinus albus HOM05D003550 ORTHO05D004336 5.5e-08 65.5 337 25.5
Solyc01g096490.3 Solanum lycopersicum HOM05D003550 ORTHO05D004336 5.5e-08 65.5 314 23.9
Sopen01g040220 Solanum pennellii HOM05D003550 ORTHO05D004336 5.5e-08 65.5 314 22.9
CiPaw.14G008600 Carya illinoinensis HOM05D003550 ORTHO05D004336 7.2e-08 65.1 420 21.4
SEGI_29973 Sequoiadendron giganteum HOM05D012352 ORTHO05D009960 9.4e-08 64.7 113 37.2
Atru.chr12.1267 Acer truncatum HOM05D003550 ORTHO05D004336 1.2e-07 64.3 307 25.4
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 1.2e-07 64.3 134 29.1
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 1.2e-07 64.3 134 29.1
Ca_12963_v3 Cicer arietinum L. HOM05D003550 ORTHO05D004336 1.2e-07 64.3 297 23.9
Thhalv10012422m.g Eutrema salsugineum HOM05D003550 ORTHO05D004336 1.2e-07 64.3 391 21.7
Zm00001eb287260 Zea mays HOM05D003550 ORTHO05D004336 1.2e-07 64.3 336 23.8
AT5G13530 Arabidopsis thaliana HOM05D003550 ORTHO05D004336 1.6e-07 63.9 260 24.2
arahy.Tifrunner.gnm1.ann1.LJ5CCV Arachis hypogaea HOM05D003550 ORTHO05D004336 1.6e-07 63.9 280 24.6
CsaV3_5G036850 Cucumis sativus L. HOM05D003550 ORTHO05D004336 1.6e-07 63.9 300 24.3
BcaB01g05352 Brassica carinata HOM05D003550 ORTHO05D004336 2.7e-07 63.2 251 25.9
MELO3C012481.2 Cucumis melo HOM05D003550 ORTHO05D004336 3.6e-07 62.8 288 24.3
Dinv34537 Davidia involucrata HOM05D016153 ORTHO05D013372 3.6e-07 62.8 174 29.9
MD07G1048200 Malus domestica HOM05D003550 ORTHO05D004336 3.6e-07 62.8 277 25.6
Medtr0137s0080 Medicago truncatula HOM05D003550 ORTHO05D004336 3.6e-07 62.8 327 26.0
Medtr3g014090 Medicago truncatula HOM05D003550 ORTHO05D004336 3.6e-07 62.8 327 26.0
CiPaw.14G112000 Carya illinoinensis HOM05D003550 ORTHO05D004336 4.7e-07 62.4 287 25.4
ECA236G1978 Erigeron canadensis HOM05D003550 ORTHO05D004336 4.7e-07 62.4 271 25.5
Ah.08g218070 Amaranthus hybridus HOM05D007624 ORTHO05D010285 6.1e-07 62.0 496 22.0
Nn7g36747 Nelumbo nucifera HOM05D003550 ORTHO05D004336 6.1e-07 62.0 292 24.7
Oeu013090.1 Olea europaea HOM05D003550 ORTHO05D004336 6.1e-07 62.0 253 26.9
Zm00001eb350870 Zea mays HOM05D003550 ORTHO05D004336 6.1e-07 62.0 336 23.8
AL6G24150 Arabidopsis lyrata HOM05D003550 ORTHO05D004336 7.9e-07 61.6 260 24.6
Gohir.D04G184801 Gossypium hirsutum HOM05D000264 ORTHO05D000152 7.9e-07 61.6 184 25.5
Nitab4.5_0003481g0090 Nicotiana tabacum HOM05D003550 ORTHO05D004336 7.9e-07 61.6 293 22.9
SEGI_18020 Sequoiadendron giganteum HOM05D000038 ORTHO05D006899 7.9e-07 61.6 146 30.8
Haze_03007 Corylus avellana HOM05D003550 ORTHO05D004336 1.0e-06 61.2 340 25.9
VMungo1080G0047 Vigna mungo HOM05D003550 ORTHO05D004336 1.0e-06 61.2 311 25.4
QL10p054050 Quercus lobata HOM05D000264 ORTHO05D000152 1.4e-06 60.8 147 34.0
SGA_v2.0_scaffold232G43498 Striga asiatica HOM05D003550 ORTHO05D004336 1.4e-06 60.8 288 26.0
EL10Ac2g02773 Beta vulgaris HOM05D003550 ORTHO05D004336 1.8e-06 60.5 289 23.5
CDE02G0857 Ceratophyllum demersum HOM05D001362 ORTHO05D001310 1.8e-06 60.5 86 33.7
Lj6A837G32 Lonicera japonica HOM05D001362 ORTHO05D001310 1.8e-06 60.5 201 24.4
Lj3g0007376 Lotus japonicus HOM05D003550 ORTHO05D004336 1.8e-06 60.5 239 25.9
HanXRQChr15g0481041 Helianthus annuus HOM05D003550 ORTHO05D004336 2.3e-06 60.1 201 25.9
QL04p017759 Quercus lobata HOM05D003550 ORTHO05D004336 2.3e-06 60.1 312 26.6
SEGI_20797 Sequoiadendron giganteum HOM05D008033 ORTHO05D384007 2.3e-06 60.1 252 25.4
Thecc.10G149700 Theobroma cacao HOM05D003550 ORTHO05D004336 2.3e-06 60.1 289 24.6
CANSAT56G1944 Cannabis sativa HOM05D003550 ORTHO05D004336 3.0e-06 59.7 313 26.2
CARHR199910 Cardamine hirsuta HOM05D003550 ORTHO05D004336 3.0e-06 59.7 260 24.6
FAN15G0471 Fragaria x ananassa HOM05D000413 ORTHO05D000292 3.0e-06 59.7 211 23.7
Gorai.012G177600 Gossypium raimondii HOM05D000264 ORTHO05D000152 3.0e-06 59.7 197 27.4
Ah.11g046820 Amaranthus hybridus HOM05D001362 ORTHO05D001310 3.9e-06 59.3 82 36.6
AL6G24910 Arabidopsis lyrata HOM05D002893 ORTHO05D003387 3.9e-06 59.3 293 22.9
HanXRQChr15g0473251 Helianthus annuus HOM05D003550 ORTHO05D004336 3.9e-06 59.3 192 26.6
PGR031G1017 Punica granatum HOM05D003550 ORTHO05D004336 3.9e-06 59.3 254 25.6
Hund13381 Selenicereus undatus HOM05D003550 ORTHO05D004336 3.9e-06 59.3 286 23.1
Peaxi162Scf00082g00122 Petunia axillaris HOM05D003550 ORTHO05D004336 5.1e-06 58.9 439 22.3
FvH4_2g29700 Fragaria vesca HOM05D000413 ORTHO05D000292 6.7e-06 58.5 211 23.7
FAN24G3235 Fragaria x ananassa HOM05D000413 ORTHO05D000292 6.7e-06 58.5 211 23.7
HanXRQChr11g0340551 Helianthus annuus HOM05D003550 ORTHO05D004336 8.8e-06 58.2 192 26.6
SEGI_10047 Sequoiadendron giganteum HOM05D008967 ORTHO05D385793 8.8e-06 58.2 90 37.8


User provided reference genes

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