Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_20298 Sequoiadendron giganteum HOM05D004738 ORTHO05D006439 2.3e-262 908.3 436 100.0
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 3.3e-128 462.6 337 62.9
Sopen00g008920 Solanum pennellii HOM05D004738 ORTHO05D006439 4.3e-128 462.2 432 52.8
Sopen03g039310 Solanum pennellii HOM05D004738 ORTHO05D006439 4.3e-128 462.2 432 52.8
Solyc03g120430.3 Solanum lycopersicum HOM05D004738 ORTHO05D006439 7.4e-128 461.5 426 53.1
CiPaw.02G152800 Carya illinoinensis HOM05D004738 ORTHO05D006439 1.3e-127 460.7 434 53.0
Os01g0682500 Oryza sativa ssp. japonica HOM05D004738 ORTHO05D006439 4.1e-126 455.7 337 62.6
MBI01_g13569_MAGBIO Magnolia biondii HOM05D004738 ORTHO05D006439 1.5e-125 453.8 337 62.3
Thecc.06G081700 Theobroma cacao HOM05D004738 ORTHO05D006439 3.4e-125 452.6 337 62.3
Gohir.A02G122900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 4.5e-125 452.2 341 61.3
COL.COLO4_02957 Corchorus olitorius HOM05D004738 ORTHO05D006439 5.9e-125 451.8 341 60.7
CAN.G438.45 Capsicum annuum HOM05D004738 ORTHO05D006439 7.7e-125 451.4 422 53.1
HanXRQChr04g0096441 Helianthus annuus HOM05D004738 ORTHO05D006439 7.7e-125 451.4 337 61.7
HanXRQChr02g0032631 Helianthus annuus HOM05D004738 ORTHO05D006439 1.7e-124 450.3 340 60.9
PGSC0003DMG400002559 Solanum tuberosum HOM05D004738 ORTHO05D006439 1.7e-124 450.3 352 59.1
Cpa.g.sc10.174 Carica papaya HOM05D004738 ORTHO05D006439 2.2e-124 449.9 341 61.3
Cc04_g03640 Coffea canephora HOM05D004738 ORTHO05D006439 2.2e-124 449.9 368 56.2
Dinv30535 Davidia involucrata HOM05D004738 ORTHO05D006439 2.2e-124 449.9 337 62.3
Haze_16464 Corylus avellana HOM05D004738 ORTHO05D006439 2.9e-124 449.5 416 54.6
Zm00001eb156570 Zea mays HOM05D004738 ORTHO05D006439 2.9e-124 449.5 331 63.7
QL05p025470 Quercus lobata HOM05D004738 ORTHO05D006439 3.8e-124 449.1 341 61.9
Aqoxy7G03780 Aquilegia oxysepala HOM05D004738 ORTHO05D006439 5.0e-124 448.7 337 62.0
CANSAT56G4214 Cannabis sativa HOM05D004738 ORTHO05D006439 5.0e-124 448.7 341 61.0
Gorai.009G132100 Gossypium raimondii HOM05D004738 ORTHO05D006439 5.0e-124 448.7 353 59.2
Cfa002046 Carpinus fangiana HOM05D004738 ORTHO05D006439 1.4e-123 447.2 341 62.5
Gorai.002G058000 Gossypium raimondii HOM05D004738 ORTHO05D006439 1.4e-123 447.2 341 60.7
Gohir.A05G127000 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.9e-123 446.8 353 58.9
Nn2g11846 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.9e-123 446.8 339 62.5
Duzib235G1168 Durio zibethinus HOM05D004738 ORTHO05D006439 2.5e-123 446.4 351 59.8
FAN02G1331 Fragaria x ananassa HOM05D004738 ORTHO05D006439 3.2e-123 446.0 355 59.2
Lj9A505T66 Lonicera japonica HOM05D004738 ORTHO05D006439 3.2e-123 446.0 337 61.4
Gohir.D03G073500 Gossypium hirsutum HOM05D004738 ORTHO05D006439 4.2e-123 445.7 341 60.7
Nitab4.5_0005784g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 5.5e-123 445.3 337 59.6
Sc12g0009100 Simmondsia chinensis HOM05D004738 ORTHO05D006439 9.4e-123 444.5 354 59.9
THA.LOC104808210 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 1.2e-122 444.1 374 57.8
FAN05G5687 Fragaria x ananassa HOM05D004738 ORTHO05D006439 1.6e-122 443.7 341 60.7
Nn8g39296 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.6e-122 443.7 337 61.7
Aa31LG4G650 Aethionema arabicum HOM05D004738 ORTHO05D006439 2.1e-122 443.4 341 58.9
ECA247G3808 Erigeron canadensis HOM05D004738 ORTHO05D006439 2.7e-122 443.0 341 60.1
Rhsim12G0195800 Rhododendron simsii HOM05D004738 ORTHO05D006439 3.6e-122 442.6 368 57.1
Peaxi162Scf00015g00234 Petunia axillaris HOM05D004738 ORTHO05D006439 4.6e-122 442.2 337 59.3
vmacro16939 Vaccinium macrocarpon HOM05D004738 ORTHO05D006439 4.6e-122 442.2 415 52.0
MSTRG.11096 Avicennia marina HOM05D004738 ORTHO05D006439 6.1e-122 441.8 337 61.4
A07p26650 Brassica napus HOM05D004738 ORTHO05D006439 6.1e-122 441.8 351 59.3
BraA07t30308Z Brassica rapa HOM05D004738 ORTHO05D006439 6.1e-122 441.8 351 59.3
BcaC08g45309 Brassica carinata HOM05D004738 ORTHO05D006439 7.9e-122 441.4 351 59.0
C06p29130 Brassica napus HOM05D004738 ORTHO05D006439 7.9e-122 441.4 351 59.0
BolC6t38077H Brassica oleracea HOM05D004738 ORTHO05D006439 7.9e-122 441.4 351 59.0
Lsat_1_v5_gn_1_34140 Lactuca sativa HOM05D004738 ORTHO05D006439 7.9e-122 441.4 338 60.9
GSVIVG01017163001 Vitis vinifera HOM05D004738 ORTHO05D006439 7.9e-122 441.4 368 58.2
BcaB02g08689 Brassica carinata HOM05D004738 ORTHO05D006439 1.8e-121 440.3 368 56.5
Migut.I00837 Erythranthe guttata HOM05D004738 ORTHO05D006439 1.8e-121 440.3 340 59.4
Thhalv10018540m.g Eutrema salsugineum HOM05D004738 ORTHO05D006439 1.8e-121 440.3 341 60.1
SGA_v2.0_scaffold37G14802 Striga asiatica HOM05D004738 ORTHO05D006439 1.8e-121 440.3 341 59.2
A02p23600 Brassica napus HOM05D004738 ORTHO05D006439 2.3e-121 439.9 341 59.5
C02p37360 Brassica napus HOM05D004738 ORTHO05D006439 2.3e-121 439.9 341 59.5
BolC2t09746H Brassica oleracea HOM05D004738 ORTHO05D006439 2.3e-121 439.9 341 59.2
Carub.0002s2719 Capsella rubella HOM05D004738 ORTHO05D006439 2.3e-121 439.9 351 58.1
FvH4_6g30840 Fragaria vesca HOM05D004738 ORTHO05D006439 2.3e-121 439.9 341 60.1
Oeu022417.1 Olea europaea HOM05D004738 ORTHO05D006439 2.3e-121 439.9 336 61.6
BraA02t07352Z Brassica rapa HOM05D004738 ORTHO05D006439 3.0e-121 439.5 341 59.5
Glyma.13G361400 Glycine max HOM05D004738 ORTHO05D006439 5.1e-121 438.7 374 57.2
arahy.Tifrunner.gnm1.ann1.2F1L5Z Arachis hypogaea HOM05D004738 ORTHO05D006439 6.7e-121 438.3 341 60.1
BcaB05g25272 Brassica carinata HOM05D004738 ORTHO05D006439 6.7e-121 438.3 340 59.1
CSS0005409 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 6.7e-121 438.3 368 56.5
MD17G1198400 Malus domestica HOM05D004738 ORTHO05D006439 6.7e-121 438.3 337 61.1
ATR0083G024 Amborella trichopoda HOM05D004738 ORTHO05D006439 8.8e-121 438.0 339 59.6
AL2G41120 Arabidopsis lyrata HOM05D004738 ORTHO05D006439 8.8e-121 438.0 351 58.1
BcaB02g07276 Brassica carinata HOM05D004738 ORTHO05D006439 8.8e-121 438.0 341 59.5
Ca_01103_v3 Cicer arietinum L. HOM05D004738 ORTHO05D006439 8.8e-121 438.0 337 60.5
RcHm_v2.0_Chr2g0137281 Rosa chinensis HOM05D004738 ORTHO05D006439 1.1e-120 437.6 341 59.2
BraA07t32032Z Brassica rapa HOM05D004738 ORTHO05D006439 1.5e-120 437.2 341 58.9
Prupe.3G075100 Prunus persica HOM05D004738 ORTHO05D006439 1.5e-120 437.2 337 60.2
Sp5g35430 Schrenkiella parvula HOM05D004738 ORTHO05D006439 1.5e-120 437.2 341 58.9
FAN09G3531 Fragaria x ananassa HOM05D004738 ORTHO05D006439 2.0e-120 436.8 343 59.8
Sed0002572 Sechium edule HOM05D004738 ORTHO05D006439 2.0e-120 436.8 368 57.1
BcaC08g47585 Brassica carinata HOM05D004738 ORTHO05D006439 3.3e-120 436.0 341 58.7
A07p45280 Brassica napus HOM05D004738 ORTHO05D006439 4.3e-120 435.6 341 58.9
CARHR074130 Cardamine hirsuta HOM05D004738 ORTHO05D006439 4.3e-120 435.6 355 57.7
DCAR_026302 Daucus carota HOM05D004738 ORTHO05D006439 4.3e-120 435.6 337 60.5
Ciclev10025569m.g Citrus clementina HOM05D004738 ORTHO05D006439 5.7e-120 435.3 337 60.2
Hund06597 Selenicereus undatus HOM05D004738 ORTHO05D006439 5.7e-120 435.3 403 52.6
C06p54140 Brassica napus HOM05D004738 ORTHO05D006439 7.4e-120 434.9 341 58.7
CDE06G1313 Ceratophyllum demersum HOM05D004738 ORTHO05D006439 7.4e-120 434.9 337 58.2
PSO210G3793 Papaver somniferum HOM05D004738 ORTHO05D006439 7.4e-120 434.9 337 59.3
CsaV3_7G032950 Cucumis sativus L. HOM05D004738 ORTHO05D006439 9.7e-120 434.5 345 59.1
Nitab4.5_0002424g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 9.7e-120 434.5 358 56.4
PSO210G6241 Papaver somniferum HOM05D004738 ORTHO05D006439 9.7e-120 434.5 337 59.6
MELO3C023371.2 Cucumis melo HOM05D004738 ORTHO05D006439 1.3e-119 434.1 370 56.2
Eucgr.F02574 Eucalyptus grandis HOM05D004738 ORTHO05D006439 1.3e-119 434.1 341 58.7
Glyma.15G012500 Glycine max HOM05D004738 ORTHO05D006439 1.3e-119 434.1 341 59.2
Manes.04G120700 Manihot esculenta HOM05D004738 ORTHO05D006439 1.7e-119 433.7 337 59.9
TPR.G37250 Trifolium pratense HOM05D004738 ORTHO05D006439 2.2e-119 433.3 337 58.8
TWI12G0818 Tripterygium wilfordii HOM05D004738 ORTHO05D006439 2.8e-119 433.0 337 59.9
AUR62011604 Chenopodium quinoa HOM05D004738 ORTHO05D006439 4.8e-119 432.2 346 58.7
Medtr2g102510 Medicago truncatula HOM05D004738 ORTHO05D006439 4.8e-119 432.2 337 59.6
VMungo1080G0347 Vigna mungo HOM05D004738 ORTHO05D006439 4.8e-119 432.2 341 58.7
THA.LOC104812476 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 6.3e-119 431.8 341 57.8
Lalb_Chr22g0351141 Lupinus albus HOM05D004738 ORTHO05D006439 8.2e-119 431.4 341 58.7
Potri.003G058500 Populus trichocarpa HOM05D004738 ORTHO05D006439 8.2e-119 431.4 337 59.1
Lalb_Chr14g0373571 Lupinus albus HOM05D004738 ORTHO05D006439 1.1e-118 431.0 341 58.9
Actinidia08828 Actinidia chinensis HOM05D004738 ORTHO05D006439 1.8e-118 430.3 341 59.2
Zm00001eb267390 Zea mays HOM05D004738 ORTHO05D006439 2.4e-118 429.9 337 59.3
arahy.Tifrunner.gnm1.ann1.S5ELWT Arachis hypogaea HOM05D004738 ORTHO05D006439 3.1e-118 429.5 355 57.7
Lj3g0008822 Lotus japonicus HOM05D004738 ORTHO05D006439 3.1e-118 429.5 341 58.9
Pp3c18_16070 Physcomitrium patens HOM05D004738 ORTHO05D006439 5.3e-118 428.7 356 57.6
Sabra03G0032700 Salix brachista HOM05D004738 ORTHO05D006439 6.9e-118 428.3 337 57.9
FAN14G4632 Fragaria x ananassa HOM05D004738 ORTHO05D006439 2.0e-117 426.8 353 57.8
AUR62016418 Chenopodium quinoa HOM05D004738 ORTHO05D006439 4.5e-117 425.6 357 56.9
EL10Ac9g21974 Beta vulgaris HOM05D004738 ORTHO05D006439 1.7e-116 423.7 343 58.0
Gohir.D05G127900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.7e-116 423.7 315 61.6
SMO147G0425 Selaginella moellendorffii HOM05D004738 ORTHO05D006439 2.2e-116 423.3 339 59.0
AagrBONN_evm.TU.Sc2ySwM_368.190 Anthoceros agrestis HOM05D004738 ORTHO05D006439 5.0e-116 422.2 359 56.5
Phvul.005G173200 Phaseolus vulgaris HOM05D004738 ORTHO05D006439 6.5e-116 421.8 339 59.0
BolC6t40426H Brassica oleracea HOM05D004738 ORTHO05D006439 1.4e-115 420.6 372 53.8
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 1.9e-115 420.2 342 57.6
PGR102G2550 Punica granatum HOM05D004738 ORTHO05D006439 1.9e-115 420.2 336 58.9
Potri.001G177300 Populus trichocarpa HOM05D004738 ORTHO05D006439 3.2e-115 419.5 351 57.0
Lj3g0001201 Lotus japonicus HOM05D004738 ORTHO05D006439 3.9e-113 412.5 337 57.6
ClCG09G002360 Citrullus lanatus HOM05D004738 ORTHO05D006439 3.3e-112 409.5 365 55.1
CSS0037007 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 7.7e-109 398.3 339 55.5
Mapoly0010s0209 Marchantia polymorpha HOM05D004738 ORTHO05D006439 3.6e-106 389.4 335 54.6
Nn2g11397 Nelumbo nucifera HOM05D004738 ORTHO05D006439 3.0e-105 386.3 351 54.1
Duzib192G0909 Durio zibethinus HOM05D004738 ORTHO05D006439 2.6e-104 383.3 297 60.6
SHI09688 Sapria himalayana HOM05D004738 ORTHO05D006439 4.4e-104 382.5 336 55.1
HPP92_011481 Vanilla planifolia HOM05D004738 ORTHO05D006439 2.8e-103 379.8 338 54.7
unitig_21.g20511 Utricularia gibba HOM05D004738 ORTHO05D006439 2.5e-99 366.7 337 54.0
CBR_g49861 Chara braunii HOM05D004738 ORTHO05D006439 2.3e-97 360.1 358 50.0
Cre12.g542300 Chlamydomonas reinhardtii HOM05D004738 ORTHO05D006439 1.7e-95 354.0 332 51.2
BcaC03g15976 Brassica carinata HOM05D004738 ORTHO05D006439 3.7e-95 352.8 243 65.8
AT1G80380 Arabidopsis thaliana HOM05D004738 ORTHO05D006439 1.7e-92 344.0 290 55.9
HPP92_011544 Vanilla planifolia HOM05D004738 ORTHO05D006439 1.7e-92 344.0 306 53.9
Oeu033460.1 Olea europaea HOM05D004738 ORTHO05D006439 4.0e-89 332.8 293 56.3
MCO11G539 Micromonas commoda HOM05D004738 ORTHO05D006439 3.3e-83 313.2 334 45.8
PRCOL_00005044 Prasinoderma coloniale HOM05D004738 ORTHO05D006439 2.3e-76 290.4 300 48.0
Psat5g299520 Pisum sativum HOM05D004738 ORTHO05D006439 1.4e-73 281.2 238 56.7
arahy.Tifrunner.gnm1.ann1.7R7SHJ Arachis hypogaea HOM05D004738 ORTHO05D006439 9.2e-54 215.3 249 45.8
Dinv38066 Davidia involucrata HOM05D004738 ORTHO05D006439 2.3e-52 210.7 145 69.7
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 1.4e-49 201.4 241 44.8
Hund00584 Selenicereus undatus HOM05D004738 ORTHO05D006439 6.8e-49 199.1 126 65.9
TAR636G3653 Trochodendron aralioides HOM05D004738 ORTHO05D051490 6.4e-31 139.4 164 40.2
TAR636G0147 Trochodendron aralioides HOM05D004738 ORTHO05D051490 1.1e-30 138.7 164 40.2
Nn4g26563 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.3e-28 131.7 123 55.3
Dinv38065 Davidia involucrata HOM05D004738 ORTHO05D006439 1.5e-27 128.3 79 68.4
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 1.4e-25 121.7 165 41.2
arahy.Tifrunner.gnm1.ann1.CI84PE Arachis hypogaea HOM05D004738 ORTHO05D006439 1.8e-25 121.3 164 42.7
Ah.09g223940 Amaranthus hybridus HOM05D004738 ORTHO05D001643 1.0e-20 105.5 91 58.2
Sabra01G0149000 Salix brachista HOM05D004738 ORTHO05D006439 1.5e-19 101.7 75 52.0
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 2.8e-18 97.4 57 73.7
Nn1g05393 Nelumbo nucifera HOM05D004738 ORTHO05D280673 4.6e-13 80.1 82 46.3


User provided reference genes

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