Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 5.8e-183 644.0 313 100.0
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 9.4e-101 370.9 303 59.1
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 1.2e-100 370.5 302 59.3
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 2.3e-99 366.3 306 60.1
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 2.3e-99 366.3 308 58.4
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 5.2e-99 365.2 308 59.1
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 2.0e-98 363.2 306 59.5
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 2.6e-98 362.8 307 58.6
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 4.4e-98 362.1 308 58.1
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 7.5e-98 361.3 308 58.1
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 1.7e-97 360.1 304 57.9
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 2.2e-97 359.8 306 56.5
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 2.2e-97 359.8 306 56.5
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 4.8e-97 358.6 306 56.5
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 4.8e-97 358.6 308 56.8
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 8.3e-97 357.8 298 58.7
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 1.1e-96 357.5 304 57.9
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 1.8e-96 356.7 309 56.3
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 2.4e-96 356.3 308 56.2
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 3.1e-96 355.9 304 57.2
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 3.1e-96 355.9 304 57.2
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 3.1e-96 355.9 304 57.9
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 7.0e-96 354.8 298 57.7
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 1.2e-95 354.0 298 58.4
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 1.6e-95 353.6 308 55.8
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 4.5e-95 352.1 303 55.4
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 5.9e-95 351.7 315 53.7
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 5.9e-95 351.7 303 55.8
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 7.7e-95 351.3 313 54.3
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 7.7e-95 351.3 309 53.7
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 7.7e-95 351.3 303 54.5
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 1.7e-94 350.1 303 57.4
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 2.3e-94 349.7 304 56.6
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 2.3e-94 349.7 304 56.6
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 2.9e-94 349.4 309 54.4
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 3.8e-94 349.0 300 55.3
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 3.8e-94 349.0 305 57.4
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 3.8e-94 349.0 308 54.5
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 5.0e-94 348.6 296 57.1
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 5.0e-94 348.6 302 57.6
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 6.6e-94 348.2 303 54.1
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 6.6e-94 348.2 303 52.8
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 6.6e-94 348.2 300 56.3
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 6.6e-94 348.2 302 56.3
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 6.6e-94 348.2 297 54.9
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 6.6e-94 348.2 309 55.3
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 6.6e-94 348.2 305 55.1
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 8.6e-94 347.8 306 52.6
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 8.6e-94 347.8 303 58.4
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 1.5e-93 347.1 303 53.5
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 1.5e-93 347.1 311 53.7
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 1.5e-93 347.1 298 57.0
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 1.5e-93 347.1 305 55.7
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 1.9e-93 346.7 311 53.7
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 1.9e-93 346.7 305 55.4
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 1.9e-93 346.7 304 56.2
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 3.3e-93 345.9 301 56.8
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 4.2e-93 345.5 301 56.5
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 5.5e-93 345.1 301 56.8
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 2.1e-92 343.2 301 56.5
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 2.1e-92 343.2 301 56.5
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 2.1e-92 343.2 303 54.1
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 3.6e-92 342.4 303 55.1
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 4.7e-92 342.0 307 55.4
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 6.1e-92 341.7 301 56.1
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 1.4e-91 340.5 309 55.7
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 1.4e-91 340.5 311 55.3
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 1.4e-91 340.5 304 54.9
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 1.8e-91 340.1 301 55.1
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 1.8e-91 340.1 298 55.7
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 3.0e-91 339.3 307 55.0
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 4.0e-91 339.0 300 57.0
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 5.2e-91 338.6 308 52.3
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 1.2e-90 337.4 309 54.7
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 1.5e-90 337.0 301 53.5
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 1.5e-90 337.0 305 52.5
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 2.0e-90 336.7 307 52.8
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 2.2e-89 333.2 300 55.0
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 2.2e-89 333.2 297 54.2
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 3.7e-89 332.4 314 52.2
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 6.3e-89 331.6 307 53.4
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 1.8e-88 330.1 308 53.2
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 3.1e-88 329.3 302 54.6
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 9.2e-88 327.8 301 54.8
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 2.7e-87 326.2 297 51.5
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 3.5e-87 325.9 294 52.0
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 4.5e-87 325.5 297 51.2
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 7.8e-87 324.7 294 52.0
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 7.8e-87 324.7 294 51.7
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 2.9e-86 322.8 294 51.7
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 2.9e-86 322.8 294 51.7
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 5.0e-86 322.0 297 51.2
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 5.0e-86 322.0 322 52.5
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 2.5e-85 319.7 297 51.2
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 2.5e-85 319.7 294 51.4
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 4.3e-85 318.9 297 50.2
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 7.3e-85 318.2 305 52.8
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 9.5e-85 317.8 298 51.0
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.6e-84 317.0 221 67.0
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 1.6e-84 317.0 294 50.3
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 2.1e-84 316.6 297 51.2
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 6.8e-83 311.6 300 50.0
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 5.8e-82 308.5 324 49.7
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 5.6e-77 292.0 311 49.5
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 4.6e-63 245.7 243 53.1
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 4.7e-60 235.7 315 43.5
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 3.6e-52 209.5 242 44.6
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 1.2e-50 204.5 129 68.2
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 1.6e-47 194.1 201 48.3
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 1.3e-46 191.0 355 34.9
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 2.6e-42 176.8 208 43.3
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 1.2e-34 151.4 342 32.2
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.2e-34 151.4 71 100.0
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 1.3e-33 147.9 214 38.8
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 1.3e-33 147.9 214 38.8
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 9.3e-32 141.7 216 38.4
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 1.0e-30 138.3 72 79.2
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 2.5e-29 133.7 284 31.7
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.0e-26 124.0 104 58.7
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 6.7e-22 109.0 92 53.3
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 7.4e-21 105.5 59 72.9
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 6.7e-14 82.4 110 42.7
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 6.7e-14 82.4 115 40.0
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 1.8e-11 74.3 108 40.7
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 4.5e-10 69.7 73 45.2
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.8e-06 57.8 39 64.1
TPR.G22366 Trifolium pratense HOM05D002332 ORTHO05D002509 6.7e-06 55.8 191 25.7
Gorai.010G020600 Gossypium raimondii HOM05D002332 ORTHO05D002509 8.8e-06 55.5 206 25.7


User provided reference genes

Program Settings